Experiment: 1-ethyl-3-methylimidazolium acetate 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0712 and Shew_0713 overlap by 14 nucleotides Shew_0713 and cobT are separated by 122 nucleotides
Shew_0712: Shew_0712 - ABC transporter-related protein (RefSeq), at 812,368 to 813,342
_0712
Shew_0713: Shew_0713 - transport system permease protein (RefSeq), at 813,329 to 814,372
_0713
Shew_0714: cobT - nicotinate-nucleotide--dimethylbenzimidazolephosphoribosyltransferase (RefSeq), at 814,495 to 815,523
cobT
Position (kb) 813
814
815 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 812.564 kb on + strand, within Shew_0712 at 812.773 kb on - strand, within Shew_0712 at 812.868 kb on + strand, within Shew_0712 at 812.883 kb on + strand, within Shew_0712 at 813.006 kb on + strand, within Shew_0712 at 813.006 kb on + strand, within Shew_0712 at 813.006 kb on + strand, within Shew_0712 at 813.006 kb on + strand, within Shew_0712 at 813.014 kb on - strand, within Shew_0712 at 813.014 kb on - strand, within Shew_0712 at 813.014 kb on - strand, within Shew_0712 at 813.096 kb on + strand, within Shew_0712 at 813.104 kb on - strand, within Shew_0712 at 813.245 kb on - strand at 813.250 kb on - strand at 813.361 kb on + strand at 813.383 kb on + strand at 813.657 kb on + strand, within Shew_0713 at 813.726 kb on + strand, within Shew_0713 at 813.891 kb on - strand, within Shew_0713 at 813.909 kb on + strand, within Shew_0713 at 813.914 kb on + strand, within Shew_0713 at 813.917 kb on - strand, within Shew_0713 at 813.927 kb on - strand, within Shew_0713 at 814.056 kb on + strand, within Shew_0713 at 814.781 kb on - strand, within cobT at 814.879 kb on + strand, within cobT
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium acetate 10 mM remove 812,564 + Shew_0712 0.20 -0.2 812,773 - Shew_0712 0.42 -0.2 812,868 + Shew_0712 0.51 -0.5 812,883 + Shew_0712 0.53 -0.5 813,006 + Shew_0712 0.65 -0.9 813,006 + Shew_0712 0.65 -0.1 813,006 + Shew_0712 0.65 +0.0 813,006 + Shew_0712 0.65 -0.9 813,014 - Shew_0712 0.66 +0.2 813,014 - Shew_0712 0.66 -0.5 813,014 - Shew_0712 0.66 +0.8 813,096 + Shew_0712 0.75 +0.4 813,104 - Shew_0712 0.75 -0.5 813,245 - +0.6 813,250 - -1.1 813,361 + +0.0 813,383 + +0.5 813,657 + Shew_0713 0.31 -1.1 813,726 + Shew_0713 0.38 -0.2 813,891 - Shew_0713 0.54 -1.2 813,909 + Shew_0713 0.56 -0.3 813,914 + Shew_0713 0.56 -3.2 813,917 - Shew_0713 0.56 +0.1 813,927 - Shew_0713 0.57 -0.4 814,056 + Shew_0713 0.70 -0.1 814,781 - cobT Shew_0714 0.28 +0.1 814,879 + cobT Shew_0714 0.37 -0.2
Or see this region's nucleotide sequence