Experiment: 1-ethyl-3-methylimidazolium acetate 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0631 and Shew_0632 are separated by 86 nucleotides Shew_0632 and Shew_0633 are separated by 67 nucleotides
Shew_0631: Shew_0631 - AFG1 family ATPase (RefSeq), at 717,533 to 718,699
_0631
Shew_0632: Shew_0632 - OmpA/MotB domain-containing protein (RefSeq), at 718,786 to 720,231
_0632
Shew_0633: Shew_0633 - hypothetical protein (RefSeq), at 720,299 to 721,741
_0633
Position (kb) 718
719
720
721 Strain fitness (log2 ratio) -2
-1
0
1 at 718.228 kb on + strand, within Shew_0631 at 718.323 kb on + strand, within Shew_0631 at 718.383 kb on + strand, within Shew_0631 at 718.383 kb on + strand, within Shew_0631 at 718.543 kb on + strand, within Shew_0631 at 718.551 kb on - strand, within Shew_0631 at 718.849 kb on - strand at 718.897 kb on - strand at 718.897 kb on - strand at 718.943 kb on + strand, within Shew_0632 at 719.000 kb on - strand, within Shew_0632 at 719.214 kb on + strand, within Shew_0632 at 719.214 kb on + strand, within Shew_0632 at 719.214 kb on + strand, within Shew_0632 at 719.222 kb on - strand, within Shew_0632 at 719.343 kb on - strand, within Shew_0632 at 719.388 kb on - strand, within Shew_0632 at 719.432 kb on + strand, within Shew_0632 at 719.440 kb on - strand, within Shew_0632 at 719.462 kb on + strand, within Shew_0632 at 719.506 kb on - strand, within Shew_0632 at 719.519 kb on + strand, within Shew_0632 at 719.521 kb on - strand, within Shew_0632 at 719.839 kb on - strand, within Shew_0632 at 720.085 kb on + strand, within Shew_0632 at 720.163 kb on - strand at 720.175 kb on + strand at 720.188 kb on - strand at 720.188 kb on - strand at 720.287 kb on + strand at 720.369 kb on - strand at 720.374 kb on - strand at 720.374 kb on - strand at 720.380 kb on + strand at 720.387 kb on + strand at 720.395 kb on - strand at 720.553 kb on + strand, within Shew_0633 at 720.590 kb on - strand, within Shew_0633 at 720.644 kb on - strand, within Shew_0633 at 720.693 kb on - strand, within Shew_0633 at 720.727 kb on - strand, within Shew_0633 at 720.727 kb on - strand, within Shew_0633 at 720.727 kb on - strand, within Shew_0633 at 720.999 kb on - strand, within Shew_0633 at 721.000 kb on + strand, within Shew_0633
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium acetate 10 mM remove 718,228 + Shew_0631 0.60 +0.4 718,323 + Shew_0631 0.68 +0.1 718,383 + Shew_0631 0.73 +0.2 718,383 + Shew_0631 0.73 +0.3 718,543 + Shew_0631 0.87 +0.0 718,551 - Shew_0631 0.87 +0.9 718,849 - +0.2 718,897 - +0.1 718,897 - +0.4 718,943 + Shew_0632 0.11 +0.7 719,000 - Shew_0632 0.15 -2.1 719,214 + Shew_0632 0.30 -0.2 719,214 + Shew_0632 0.30 -0.0 719,214 + Shew_0632 0.30 -0.7 719,222 - Shew_0632 0.30 -0.1 719,343 - Shew_0632 0.39 -0.4 719,388 - Shew_0632 0.42 -1.8 719,432 + Shew_0632 0.45 -0.1 719,440 - Shew_0632 0.45 +0.1 719,462 + Shew_0632 0.47 +0.1 719,506 - Shew_0632 0.50 -0.4 719,519 + Shew_0632 0.51 -0.4 719,521 - Shew_0632 0.51 +0.1 719,839 - Shew_0632 0.73 -1.2 720,085 + Shew_0632 0.90 -2.1 720,163 - -0.3 720,175 + +0.1 720,188 - +0.1 720,188 - -0.0 720,287 + -0.4 720,369 - -0.6 720,374 - -0.4 720,374 - -0.0 720,380 + +0.3 720,387 + +0.8 720,395 - -0.7 720,553 + Shew_0633 0.18 -0.3 720,590 - Shew_0633 0.20 -0.1 720,644 - Shew_0633 0.24 -0.4 720,693 - Shew_0633 0.27 -0.9 720,727 - Shew_0633 0.30 -0.6 720,727 - Shew_0633 0.30 -0.9 720,727 - Shew_0633 0.30 +0.2 720,999 - Shew_0633 0.49 +0.6 721,000 + Shew_0633 0.49 -0.5
Or see this region's nucleotide sequence