Experiment: 1-ethyl-3-methylimidazolium acetate 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0313 and Shew_0314 are separated by 116 nucleotides Shew_0314 and Shew_0315 are separated by 284 nucleotides
Shew_0313: Shew_0313 - putative outer membrane adhesin like proteiin (RefSeq), at 340,995 to 355,505
_0313
Shew_0314: Shew_0314 - putative outer membrane adhesin like proteiin (RefSeq), at 355,622 to 360,283
_0314
Shew_0315: Shew_0315 - HemY domain-containing protein (RefSeq), at 360,568 to 361,734
_0315
Position (kb) 355
356
357
358
359
360
361 Strain fitness (log2 ratio) -1
0
1 at 355.054 kb on - strand at 355.072 kb on + strand at 355.827 kb on - strand at 355.952 kb on + strand at 356.535 kb on - strand, within Shew_0314 at 356.535 kb on - strand, within Shew_0314 at 356.574 kb on + strand, within Shew_0314 at 356.795 kb on + strand, within Shew_0314 at 356.818 kb on - strand, within Shew_0314 at 356.905 kb on - strand, within Shew_0314 at 356.905 kb on - strand, within Shew_0314 at 356.952 kb on - strand, within Shew_0314 at 357.064 kb on - strand, within Shew_0314 at 357.113 kb on - strand, within Shew_0314 at 357.283 kb on + strand, within Shew_0314 at 357.291 kb on - strand, within Shew_0314 at 357.385 kb on + strand, within Shew_0314 at 359.038 kb on - strand, within Shew_0314 at 359.092 kb on - strand, within Shew_0314 at 359.124 kb on + strand, within Shew_0314 at 359.334 kb on + strand, within Shew_0314 at 359.536 kb on + strand, within Shew_0314 at 359.624 kb on + strand, within Shew_0314 at 359.626 kb on - strand, within Shew_0314 at 359.640 kb on + strand, within Shew_0314 at 359.666 kb on + strand, within Shew_0314 at 359.690 kb on - strand, within Shew_0314 at 359.690 kb on - strand, within Shew_0314 at 359.876 kb on + strand at 360.218 kb on - strand at 360.228 kb on + strand at 360.246 kb on + strand at 360.287 kb on - strand at 360.365 kb on + strand at 360.365 kb on - strand at 360.365 kb on + strand at 360.365 kb on + strand at 360.373 kb on - strand at 360.373 kb on - strand at 360.373 kb on - strand at 360.373 kb on - strand at 360.483 kb on - strand at 361.178 kb on + strand, within Shew_0315
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium acetate 10 mM remove 355,054 - +0.7 355,072 + +0.6 355,827 - -0.4 355,952 + +0.1 356,535 - Shew_0314 0.20 -0.1 356,535 - Shew_0314 0.20 +0.3 356,574 + Shew_0314 0.20 -1.6 356,795 + Shew_0314 0.25 +0.2 356,818 - Shew_0314 0.26 -0.1 356,905 - Shew_0314 0.28 -0.3 356,905 - Shew_0314 0.28 +0.2 356,952 - Shew_0314 0.29 -0.8 357,064 - Shew_0314 0.31 +0.0 357,113 - Shew_0314 0.32 -0.1 357,283 + Shew_0314 0.36 -0.3 357,291 - Shew_0314 0.36 +0.4 357,385 + Shew_0314 0.38 -0.8 359,038 - Shew_0314 0.73 -0.7 359,092 - Shew_0314 0.74 -0.7 359,124 + Shew_0314 0.75 +0.0 359,334 + Shew_0314 0.80 +0.0 359,536 + Shew_0314 0.84 -0.3 359,624 + Shew_0314 0.86 -0.2 359,626 - Shew_0314 0.86 +0.3 359,640 + Shew_0314 0.86 -0.4 359,666 + Shew_0314 0.87 +0.3 359,690 - Shew_0314 0.87 +0.1 359,690 - Shew_0314 0.87 -0.5 359,876 + +0.2 360,218 - +0.3 360,228 + +0.2 360,246 + +0.9 360,287 - -0.1 360,365 + -0.8 360,365 - +0.2 360,365 + -0.9 360,365 + +0.4 360,373 - +0.2 360,373 - +0.0 360,373 - +0.4 360,373 - -0.5 360,483 - -0.2 361,178 + Shew_0315 0.52 -0.0
Or see this region's nucleotide sequence