Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_4216 and Dshi_4217 are separated by 3 nucleotides Dshi_4217 and Dshi_4218 are separated by 126 nucleotides
Dshi_4216: Dshi_4216 - ABC-1 domain protein (RefSeq), at 63,812 to 65,134
_4216
Dshi_4217: Dshi_4217 - transcriptional regulator, LacI family (RefSeq), at 65,138 to 66,145
_4217
Dshi_4218: Dshi_4218 - hypothetical protein (RefSeq), at 66,272 to 67,225
_4218
Position (kb) 65
66
67 Strain fitness (log2 ratio) -2
-1
0
1 at 64.391 kb on - strand, within Dshi_4216 at 64.488 kb on - strand, within Dshi_4216 at 64.510 kb on + strand, within Dshi_4216 at 64.520 kb on + strand, within Dshi_4216 at 64.590 kb on - strand, within Dshi_4216 at 64.612 kb on + strand, within Dshi_4216 at 64.636 kb on - strand, within Dshi_4216 at 64.705 kb on + strand, within Dshi_4216 at 64.713 kb on - strand, within Dshi_4216 at 64.758 kb on + strand, within Dshi_4216 at 64.758 kb on + strand, within Dshi_4216 at 64.841 kb on - strand, within Dshi_4216 at 64.900 kb on + strand, within Dshi_4216 at 65.032 kb on + strand at 65.055 kb on + strand at 65.085 kb on - strand at 65.143 kb on - strand at 65.179 kb on - strand at 65.320 kb on + strand, within Dshi_4217 at 65.659 kb on - strand, within Dshi_4217 at 65.747 kb on + strand, within Dshi_4217 at 66.109 kb on - strand at 66.321 kb on - strand at 66.631 kb on - strand, within Dshi_4218 at 66.647 kb on - strand, within Dshi_4218 at 66.686 kb on - strand, within Dshi_4218 at 66.753 kb on - strand, within Dshi_4218 at 66.837 kb on + strand, within Dshi_4218 at 66.856 kb on - strand, within Dshi_4218 at 67.047 kb on - strand, within Dshi_4218
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 64,391 - Dshi_4216 0.44 +0.8 64,488 - Dshi_4216 0.51 -0.6 64,510 + Dshi_4216 0.53 +0.2 64,520 + Dshi_4216 0.54 -0.3 64,590 - Dshi_4216 0.59 -1.5 64,612 + Dshi_4216 0.60 +0.5 64,636 - Dshi_4216 0.62 -0.3 64,705 + Dshi_4216 0.67 -1.4 64,713 - Dshi_4216 0.68 -0.8 64,758 + Dshi_4216 0.72 +0.4 64,758 + Dshi_4216 0.72 -0.5 64,841 - Dshi_4216 0.78 -1.0 64,900 + Dshi_4216 0.82 -0.2 65,032 + -0.5 65,055 + -1.0 65,085 - +0.5 65,143 - -2.4 65,179 - -0.6 65,320 + Dshi_4217 0.18 -1.3 65,659 - Dshi_4217 0.52 -0.4 65,747 + Dshi_4217 0.60 -1.8 66,109 - -0.6 66,321 - +0.8 66,631 - Dshi_4218 0.38 -0.0 66,647 - Dshi_4218 0.39 +1.2 66,686 - Dshi_4218 0.43 -1.0 66,753 - Dshi_4218 0.50 +0.4 66,837 + Dshi_4218 0.59 -0.9 66,856 - Dshi_4218 0.61 -0.6 67,047 - Dshi_4218 0.81 +0.4
Or see this region's nucleotide sequence