Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0660 and Dshi_0661 are separated by 337 nucleotides Dshi_0661 and Dshi_0662 are separated by 14 nucleotides Dshi_0662 and Dshi_0663 are separated by 12 nucleotides Dshi_0663 and Dshi_0664 overlap by 4 nucleotides
Dshi_0660: Dshi_0660 - transcriptional regulator, Crp/Fnr family (RefSeq), at 664,362 to 665,111
_0660
Dshi_0661: Dshi_0661 - cytochrome c oxidase, cbb3-type, subunit I (RefSeq), at 665,449 to 667,050
_0661
Dshi_0662: Dshi_0662 - cytochrome c oxidase, cbb3-type, subunit II (RefSeq), at 667,065 to 667,790
_0662
Dshi_0663: Dshi_0663 - Cbb3-type cytochrome oxidase component (RefSeq), at 667,803 to 668,036
_0663
Dshi_0664: Dshi_0664 - cytochrome c oxidase, cbb3-type, subunit III (RefSeq), at 668,033 to 668,896
_0664
Position (kb) 665
666
667
668 Strain fitness (log2 ratio) -1
0
1
2
3 at 664.450 kb on - strand, within Dshi_0660 at 664.450 kb on - strand, within Dshi_0660 at 664.450 kb on - strand, within Dshi_0660 at 664.474 kb on + strand, within Dshi_0660 at 664.727 kb on + strand, within Dshi_0660 at 664.916 kb on - strand, within Dshi_0660 at 665.294 kb on + strand at 665.392 kb on - strand at 665.443 kb on + strand at 665.548 kb on + strand at 665.556 kb on - strand at 665.590 kb on - strand at 665.683 kb on + strand, within Dshi_0661 at 665.686 kb on + strand, within Dshi_0661 at 665.759 kb on - strand, within Dshi_0661 at 665.759 kb on - strand, within Dshi_0661 at 665.796 kb on - strand, within Dshi_0661 at 665.796 kb on - strand, within Dshi_0661 at 665.859 kb on + strand, within Dshi_0661 at 665.976 kb on + strand, within Dshi_0661 at 666.035 kb on + strand, within Dshi_0661 at 666.187 kb on + strand, within Dshi_0661 at 666.263 kb on - strand, within Dshi_0661 at 666.283 kb on + strand, within Dshi_0661 at 666.417 kb on - strand, within Dshi_0661 at 666.509 kb on - strand, within Dshi_0661 at 666.650 kb on + strand, within Dshi_0661 at 666.654 kb on + strand, within Dshi_0661 at 666.749 kb on + strand, within Dshi_0661 at 666.772 kb on - strand, within Dshi_0661 at 666.827 kb on - strand, within Dshi_0661 at 666.828 kb on + strand, within Dshi_0661 at 666.838 kb on + strand, within Dshi_0661 at 666.846 kb on - strand, within Dshi_0661 at 666.939 kb on - strand at 666.953 kb on - strand at 666.953 kb on - strand at 667.004 kb on + strand at 667.081 kb on + strand at 667.081 kb on + strand at 667.172 kb on + strand, within Dshi_0662 at 667.185 kb on - strand, within Dshi_0662 at 667.248 kb on + strand at 667.255 kb on - strand, within Dshi_0662 at 667.317 kb on - strand, within Dshi_0662 at 667.350 kb on + strand, within Dshi_0662 at 667.407 kb on - strand, within Dshi_0662 at 667.414 kb on - strand, within Dshi_0662 at 667.418 kb on + strand, within Dshi_0662 at 667.576 kb on - strand, within Dshi_0662 at 667.581 kb on - strand, within Dshi_0662 at 667.613 kb on + strand, within Dshi_0662 at 667.690 kb on - strand, within Dshi_0662 at 667.807 kb on - strand at 667.886 kb on + strand, within Dshi_0663 at 667.894 kb on - strand, within Dshi_0663 at 667.988 kb on + strand, within Dshi_0663 at 668.023 kb on - strand at 668.030 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 664,450 - Dshi_0660 0.12 +2.2 664,450 - Dshi_0660 0.12 -0.9 664,450 - Dshi_0660 0.12 +1.2 664,474 + Dshi_0660 0.15 +0.6 664,727 + Dshi_0660 0.49 +2.9 664,916 - Dshi_0660 0.74 +0.4 665,294 + +0.5 665,392 - -0.5 665,443 + +0.1 665,548 + -1.5 665,556 - -0.9 665,590 - -0.5 665,683 + Dshi_0661 0.15 +1.1 665,686 + Dshi_0661 0.15 +1.2 665,759 - Dshi_0661 0.19 +0.7 665,759 - Dshi_0661 0.19 -1.3 665,796 - Dshi_0661 0.22 +0.8 665,796 - Dshi_0661 0.22 +0.3 665,859 + Dshi_0661 0.26 +0.4 665,976 + Dshi_0661 0.33 -0.4 666,035 + Dshi_0661 0.37 +1.4 666,187 + Dshi_0661 0.46 +0.7 666,263 - Dshi_0661 0.51 +1.5 666,283 + Dshi_0661 0.52 +0.1 666,417 - Dshi_0661 0.60 +0.4 666,509 - Dshi_0661 0.66 +0.1 666,650 + Dshi_0661 0.75 +1.7 666,654 + Dshi_0661 0.75 -0.7 666,749 + Dshi_0661 0.81 +3.7 666,772 - Dshi_0661 0.83 +0.1 666,827 - Dshi_0661 0.86 +0.4 666,828 + Dshi_0661 0.86 +1.1 666,838 + Dshi_0661 0.87 +1.1 666,846 - Dshi_0661 0.87 +0.4 666,939 - +1.3 666,953 - +0.4 666,953 - +1.1 667,004 + +0.7 667,081 + +0.8 667,081 + +1.9 667,172 + Dshi_0662 0.15 +0.1 667,185 - Dshi_0662 0.17 +2.3 667,248 + +1.1 667,255 - Dshi_0662 0.26 +0.8 667,317 - Dshi_0662 0.35 -0.4 667,350 + Dshi_0662 0.39 +1.4 667,407 - Dshi_0662 0.47 +1.1 667,414 - Dshi_0662 0.48 +0.8 667,418 + Dshi_0662 0.49 -0.9 667,576 - Dshi_0662 0.70 +0.1 667,581 - Dshi_0662 0.71 +0.3 667,613 + Dshi_0662 0.75 +1.1 667,690 - Dshi_0662 0.86 +2.1 667,807 - +1.4 667,886 + Dshi_0663 0.35 +0.5 667,894 - Dshi_0663 0.39 +0.1 667,988 + Dshi_0663 0.79 +1.5 668,023 - +0.9 668,030 + +0.3
Or see this region's nucleotide sequence