Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0625

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_6016 and Dshi_6017 are separated by 196 nucleotidesDshi_6017 and Dshi_0625 are separated by 109 nucleotidesDshi_0625 and Dshi_0626 are separated by 230 nucleotidesDshi_0626 and Dshi_0627 overlap by 8 nucleotides Dshi_6016: Dshi_6016 - 23SrRNA (RefSeq), at 619,764 to 622,680 _6016 Dshi_6017: Dshi_6017 - 5SrRNA (RefSeq), at 622,877 to 622,994 _6017 Dshi_0625: Dshi_0625 - hypothetical protein (RefSeq), at 623,104 to 623,826 _0625 Dshi_0626: Dshi_0626 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 624,057 to 624,743 _0626 Dshi_0627: Dshi_0627 - ABC transporter related (RefSeq), at 624,736 to 625,491 _0627 Position (kb) 623 624Strain fitness (log2 ratio) -1 0 1at 623.220 kb on - strand, within Dshi_0625at 623.481 kb on - strand, within Dshi_0625at 624.259 kb on - strand, within Dshi_0626at 624.305 kb on + strand, within Dshi_0626at 624.313 kb on + strand, within Dshi_0626at 624.391 kb on + strand, within Dshi_0626at 624.397 kb on - strand, within Dshi_0626at 624.444 kb on + strand, within Dshi_0626at 624.501 kb on - strand, within Dshi_0626at 624.522 kb on - strand, within Dshi_0626at 624.563 kb on - strand, within Dshi_0626at 624.679 kb on + strandat 624.761 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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623,220 - Dshi_0625 0.16 +0.7
623,481 - Dshi_0625 0.52 +0.8
624,259 - Dshi_0626 0.29 -0.4
624,305 + Dshi_0626 0.36 +0.2
624,313 + Dshi_0626 0.37 +1.0
624,391 + Dshi_0626 0.49 -0.5
624,397 - Dshi_0626 0.49 +0.5
624,444 + Dshi_0626 0.56 +0.0
624,501 - Dshi_0626 0.65 +0.3
624,522 - Dshi_0626 0.68 -0.4
624,563 - Dshi_0626 0.74 +0.2
624,679 + -0.4
624,761 + +0.7

Or see this region's nucleotide sequence