Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0530

Experiment: MoLS4 with L-Serine (N), without Molybdate/Tungstate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpgpA and rrf2 are separated by 100 nucleotidesrrf2 and rrf1 are separated by 3 nucleotidesrrf1 and hmcF are separated by 92 nucleotides DVU0528: pgpA - phosphatidylglycerophosphatase (TIGR), at 601,058 to 601,537 pgpA DVU0529: rrf2 - Rrf2 protein (voordouw), at 601,638 to 602,090 rrf2 DVU0530: rrf1 - Rrf1 protein (voordouw), at 602,094 to 602,510 rrf1 DVU0531: hmcF - HmcF, 52.7 kd protein in hmc operon (voordouw), at 602,603 to 603,988 hmcF Position (kb) 602 603Strain fitness (log2 ratio) -3 -2 -1 0 1at 601.521 kb on + strandat 601.580 kb on - strandat 601.629 kb on + strandat 601.636 kb on + strandat 601.776 kb on + strand, within rrf2at 601.791 kb on - strand, within rrf2at 601.851 kb on + strand, within rrf2at 601.872 kb on + strand, within rrf2at 601.872 kb on + strand, within rrf2at 601.936 kb on + strand, within rrf2at 602.011 kb on + strand, within rrf2at 602.021 kb on + strand, within rrf2at 602.021 kb on + strand, within rrf2at 602.021 kb on + strand, within rrf2at 602.085 kb on + strandat 602.087 kb on - strandat 602.143 kb on - strand, within rrf1at 602.200 kb on - strand, within rrf1at 602.259 kb on + strand, within rrf1at 602.353 kb on - strand, within rrf1at 602.398 kb on - strand, within rrf1at 602.425 kb on + strand, within rrf1at 602.440 kb on + strand, within rrf1at 602.448 kb on - strand, within rrf1at 602.508 kb on + strandat 602.518 kb on - strandat 602.524 kb on - strandat 602.624 kb on - strandat 602.726 kb on + strandat 602.804 kb on - strand, within hmcFat 603.048 kb on + strand, within hmcFat 603.048 kb on + strand, within hmcFat 603.090 kb on - strand, within hmcFat 603.119 kb on + strand, within hmcFat 603.125 kb on + strand, within hmcFat 603.170 kb on - strand, within hmcFat 603.273 kb on + strand, within hmcFat 603.273 kb on + strand, within hmcFat 603.281 kb on - strand, within hmcFat 603.360 kb on + strand, within hmcFat 603.443 kb on + strand, within hmcFat 603.502 kb on - strand, within hmcF

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Serine (N), without Molybdate/Tungstate
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601,521 + -0.2
601,580 - -0.3
601,629 + -0.3
601,636 + +0.6
601,776 + rrf2 DVU0529 0.30 -0.5
601,791 - rrf2 DVU0529 0.34 +0.1
601,851 + rrf2 DVU0529 0.47 +0.8
601,872 + rrf2 DVU0529 0.52 +0.6
601,872 + rrf2 DVU0529 0.52 -0.8
601,936 + rrf2 DVU0529 0.66 +0.3
602,011 + rrf2 DVU0529 0.82 -0.6
602,021 + rrf2 DVU0529 0.85 -1.3
602,021 + rrf2 DVU0529 0.85 +0.1
602,021 + rrf2 DVU0529 0.85 +0.2
602,085 + -0.9
602,087 - -2.7
602,143 - rrf1 DVU0530 0.12 +1.0
602,200 - rrf1 DVU0530 0.25 -2.0
602,259 + rrf1 DVU0530 0.40 +0.1
602,353 - rrf1 DVU0530 0.62 -0.6
602,398 - rrf1 DVU0530 0.73 -0.9
602,425 + rrf1 DVU0530 0.79 -0.2
602,440 + rrf1 DVU0530 0.83 -0.4
602,448 - rrf1 DVU0530 0.85 -0.5
602,508 + -0.2
602,518 - -0.2
602,524 - +1.4
602,624 - -0.7
602,726 + -1.5
602,804 - hmcF DVU0531 0.15 -0.2
603,048 + hmcF DVU0531 0.32 +0.2
603,048 + hmcF DVU0531 0.32 +0.2
603,090 - hmcF DVU0531 0.35 -0.3
603,119 + hmcF DVU0531 0.37 -0.2
603,125 + hmcF DVU0531 0.38 -0.2
603,170 - hmcF DVU0531 0.41 -0.5
603,273 + hmcF DVU0531 0.48 -1.1
603,273 + hmcF DVU0531 0.48 -0.3
603,281 - hmcF DVU0531 0.49 +0.2
603,360 + hmcF DVU0531 0.55 -0.1
603,443 + hmcF DVU0531 0.61 -3.3
603,502 - hmcF DVU0531 0.65 -0.2

Or see this region's nucleotide sequence