Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1489

Experiment: MoLS4 with L-Serine (N), without Molybdate/Tungstate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1487 and DVU1488 overlap by 11 nucleotidesDVU1488 and DVU1489 are separated by 3 nucleotidesDVU1489 and DVU1490 are separated by 2 nucleotides DVU1487: DVU1487 - conserved domain protein (TIGR), at 1,565,472 to 1,565,900 DVU1487 DVU1488: DVU1488 - minor tail protein, putative (TIGR), at 1,565,890 to 1,566,795 DVU1488 DVU1489: DVU1489 - hypothetical protein (TIGR), at 1,566,799 to 1,567,149 DVU1489 DVU1490: DVU1490 - tail tape measure protein, putative (TIGR), at 1,567,152 to 1,569,950 DVU1490 Position (kb) 1566 1567 1568Strain fitness (log2 ratio) -2 -1 0 1at 1565.808 kb on + strand, within DVU1487at 1565.850 kb on + strand, within DVU1487at 1565.880 kb on - strandat 1565.888 kb on + strandat 1565.888 kb on + strandat 1565.896 kb on - strandat 1566.030 kb on - strand, within DVU1488at 1566.087 kb on + strand, within DVU1488at 1566.095 kb on - strand, within DVU1488at 1566.138 kb on + strand, within DVU1488at 1566.146 kb on - strand, within DVU1488at 1566.156 kb on - strand, within DVU1488at 1566.157 kb on + strand, within DVU1488at 1566.165 kb on - strand, within DVU1488at 1566.169 kb on + strand, within DVU1488at 1566.203 kb on + strand, within DVU1488at 1566.274 kb on + strand, within DVU1488at 1566.295 kb on + strand, within DVU1488at 1566.340 kb on - strand, within DVU1488at 1566.419 kb on + strand, within DVU1488at 1566.519 kb on - strand, within DVU1488at 1566.519 kb on - strand, within DVU1488at 1566.597 kb on + strand, within DVU1488at 1566.605 kb on - strand, within DVU1488at 1566.796 kb on + strandat 1566.796 kb on + strandat 1566.797 kb on + strandat 1566.797 kb on + strandat 1566.797 kb on + strandat 1566.797 kb on + strandat 1566.804 kb on - strandat 1566.805 kb on - strandat 1566.805 kb on - strandat 1566.805 kb on - strandat 1566.805 kb on - strandat 1566.805 kb on - strandat 1566.831 kb on - strandat 1566.836 kb on - strand, within DVU1489at 1566.836 kb on - strand, within DVU1489at 1566.952 kb on - strand, within DVU1489at 1566.989 kb on + strand, within DVU1489at 1567.159 kb on + strandat 1567.218 kb on + strandat 1567.307 kb on + strandat 1567.307 kb on + strandat 1567.315 kb on - strandat 1567.315 kb on - strandat 1567.358 kb on + strandat 1567.358 kb on + strandat 1567.383 kb on - strandat 1567.409 kb on - strandat 1567.435 kb on + strand, within DVU1490at 1567.444 kb on + strand, within DVU1490at 1567.447 kb on + strand, within DVU1490at 1567.462 kb on - strand, within DVU1490at 1567.501 kb on + strand, within DVU1490at 1567.522 kb on + strand, within DVU1490at 1567.538 kb on + strand, within DVU1490at 1567.538 kb on + strand, within DVU1490at 1567.595 kb on - strand, within DVU1490at 1567.650 kb on - strand, within DVU1490at 1567.665 kb on + strand, within DVU1490at 1567.729 kb on + strand, within DVU1490at 1567.739 kb on + strand, within DVU1490at 1567.739 kb on + strand, within DVU1490at 1567.749 kb on + strand, within DVU1490at 1567.751 kb on + strand, within DVU1490at 1567.757 kb on - strand, within DVU1490at 1567.772 kb on + strand, within DVU1490at 1567.803 kb on - strand, within DVU1490at 1567.839 kb on - strand, within DVU1490at 1567.887 kb on + strand, within DVU1490at 1567.887 kb on + strand, within DVU1490at 1567.895 kb on - strand, within DVU1490at 1567.910 kb on - strand, within DVU1490at 1567.956 kb on + strand, within DVU1490at 1567.974 kb on - strand, within DVU1490at 1568.070 kb on - strand, within DVU1490at 1568.141 kb on + strand, within DVU1490at 1568.149 kb on - strand, within DVU1490

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Serine (N), without Molybdate/Tungstate
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1,565,808 + DVU1487 0.78 -1.6
1,565,850 + DVU1487 0.88 +0.0
1,565,880 - +0.4
1,565,888 + -0.4
1,565,888 + +0.2
1,565,896 - +0.3
1,566,030 - DVU1488 0.15 -0.3
1,566,087 + DVU1488 0.22 -0.1
1,566,095 - DVU1488 0.23 -0.5
1,566,138 + DVU1488 0.27 -0.2
1,566,146 - DVU1488 0.28 -0.0
1,566,156 - DVU1488 0.29 -1.6
1,566,157 + DVU1488 0.29 -0.2
1,566,165 - DVU1488 0.30 -0.3
1,566,169 + DVU1488 0.31 -0.0
1,566,203 + DVU1488 0.35 -2.2
1,566,274 + DVU1488 0.42 +0.3
1,566,295 + DVU1488 0.45 -0.5
1,566,340 - DVU1488 0.50 -0.3
1,566,419 + DVU1488 0.58 +0.2
1,566,519 - DVU1488 0.69 +0.0
1,566,519 - DVU1488 0.69 +0.2
1,566,597 + DVU1488 0.78 -0.3
1,566,605 - DVU1488 0.79 -0.0
1,566,796 + -0.2
1,566,796 + -0.7
1,566,797 + -0.1
1,566,797 + -0.1
1,566,797 + +0.7
1,566,797 + +0.3
1,566,804 - -0.8
1,566,805 - -0.2
1,566,805 - -1.0
1,566,805 - +0.9
1,566,805 - -0.4
1,566,805 - -2.1
1,566,831 - +0.6
1,566,836 - DVU1489 0.11 +0.4
1,566,836 - DVU1489 0.11 -0.3
1,566,952 - DVU1489 0.44 -0.5
1,566,989 + DVU1489 0.54 -1.6
1,567,159 + -0.6
1,567,218 + -0.2
1,567,307 + -1.1
1,567,307 + -0.1
1,567,315 - -0.6
1,567,315 - -0.1
1,567,358 + +0.4
1,567,358 + +0.0
1,567,383 - -0.2
1,567,409 - -0.9
1,567,435 + DVU1490 0.10 -0.3
1,567,444 + DVU1490 0.10 -0.1
1,567,447 + DVU1490 0.11 +0.1
1,567,462 - DVU1490 0.11 +1.7
1,567,501 + DVU1490 0.12 -0.1
1,567,522 + DVU1490 0.13 -0.5
1,567,538 + DVU1490 0.14 -0.4
1,567,538 + DVU1490 0.14 -0.7
1,567,595 - DVU1490 0.16 -0.0
1,567,650 - DVU1490 0.18 -1.0
1,567,665 + DVU1490 0.18 +0.2
1,567,729 + DVU1490 0.21 -0.5
1,567,739 + DVU1490 0.21 -0.7
1,567,739 + DVU1490 0.21 -0.2
1,567,749 + DVU1490 0.21 -1.1
1,567,751 + DVU1490 0.21 -0.1
1,567,757 - DVU1490 0.22 -0.2
1,567,772 + DVU1490 0.22 +0.1
1,567,803 - DVU1490 0.23 -0.1
1,567,839 - DVU1490 0.25 +0.5
1,567,887 + DVU1490 0.26 -1.5
1,567,887 + DVU1490 0.26 -0.0
1,567,895 - DVU1490 0.27 -0.2
1,567,910 - DVU1490 0.27 +0.8
1,567,956 + DVU1490 0.29 -1.7
1,567,974 - DVU1490 0.29 -0.1
1,568,070 - DVU1490 0.33 -0.2
1,568,141 + DVU1490 0.35 +0.2
1,568,149 - DVU1490 0.36 -1.4

Or see this region's nucleotide sequence