Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1465

Experiment: MoLS4 with L-Serine (N), without Molybdate/Tungstate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1464 and DVU1465 are separated by 43 nucleotidesDVU1465 and argB are separated by 106 nucleotides DVU1464: DVU1464 - heptosyltransferase family protein (TIGR), at 1,542,988 to 1,544,223 DVU1464 DVU1465: DVU1465 - CgeB family protein (TIGR), at 1,544,267 to 1,545,595 DVU1465 DVU1466: argB - acetylglutamate kinase (TIGR), at 1,545,702 to 1,546,628 argB Position (kb) 1544 1545 1546Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 1543.301 kb on - strand, within DVU1464at 1543.324 kb on - strand, within DVU1464at 1543.389 kb on - strand, within DVU1464at 1543.416 kb on + strand, within DVU1464at 1543.424 kb on - strand, within DVU1464at 1543.582 kb on + strand, within DVU1464at 1543.614 kb on + strand, within DVU1464at 1543.664 kb on - strand, within DVU1464at 1543.703 kb on + strand, within DVU1464at 1543.703 kb on + strand, within DVU1464at 1543.782 kb on + strand, within DVU1464at 1543.794 kb on + strand, within DVU1464at 1543.803 kb on - strand, within DVU1464at 1543.859 kb on + strand, within DVU1464at 1543.892 kb on + strand, within DVU1464at 1543.892 kb on + strand, within DVU1464at 1543.900 kb on - strand, within DVU1464at 1543.900 kb on - strand, within DVU1464at 1543.900 kb on - strand, within DVU1464at 1543.928 kb on + strand, within DVU1464at 1543.951 kb on + strand, within DVU1464at 1544.038 kb on - strand, within DVU1464at 1544.045 kb on + strand, within DVU1464at 1544.053 kb on - strand, within DVU1464at 1544.075 kb on - strand, within DVU1464at 1544.084 kb on + strand, within DVU1464at 1544.094 kb on + strand, within DVU1464at 1544.145 kb on - strandat 1544.189 kb on - strandat 1544.189 kb on - strandat 1544.225 kb on - strandat 1544.227 kb on + strandat 1544.269 kb on - strandat 1544.296 kb on + strandat 1544.319 kb on + strandat 1544.325 kb on + strandat 1544.412 kb on + strand, within DVU1465at 1544.432 kb on - strand, within DVU1465at 1544.434 kb on - strand, within DVU1465at 1544.479 kb on - strand, within DVU1465at 1544.494 kb on + strand, within DVU1465at 1544.507 kb on - strand, within DVU1465at 1544.509 kb on - strand, within DVU1465at 1544.557 kb on + strand, within DVU1465at 1544.557 kb on + strand, within DVU1465at 1544.565 kb on + strand, within DVU1465at 1544.613 kb on + strand, within DVU1465at 1544.654 kb on + strand, within DVU1465at 1544.682 kb on - strand, within DVU1465at 1544.944 kb on + strand, within DVU1465at 1544.952 kb on - strand, within DVU1465at 1544.952 kb on - strand, within DVU1465at 1544.958 kb on + strand, within DVU1465at 1544.990 kb on - strand, within DVU1465at 1544.992 kb on + strand, within DVU1465at 1545.012 kb on + strand, within DVU1465at 1545.020 kb on - strand, within DVU1465at 1545.020 kb on - strand, within DVU1465at 1545.020 kb on - strand, within DVU1465at 1545.064 kb on + strand, within DVU1465at 1545.088 kb on - strand, within DVU1465at 1545.123 kb on + strand, within DVU1465at 1545.123 kb on + strand, within DVU1465at 1545.131 kb on - strand, within DVU1465at 1545.185 kb on - strand, within DVU1465at 1545.258 kb on - strand, within DVU1465at 1545.420 kb on + strand, within DVU1465at 1545.458 kb on + strand, within DVU1465at 1545.466 kb on - strandat 1545.590 kb on + strandat 1545.698 kb on - strandat 1545.717 kb on + strandat 1545.731 kb on + strandat 1545.842 kb on + strand, within argBat 1545.859 kb on - strand, within argBat 1546.186 kb on + strand, within argBat 1546.360 kb on - strand, within argBat 1546.370 kb on - strand, within argBat 1546.485 kb on + strand, within argB

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Serine (N), without Molybdate/Tungstate
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1,543,301 - DVU1464 0.25 +1.8
1,543,324 - DVU1464 0.27 +0.6
1,543,389 - DVU1464 0.32 +1.3
1,543,416 + DVU1464 0.35 +1.6
1,543,424 - DVU1464 0.35 +1.0
1,543,582 + DVU1464 0.48 +0.2
1,543,614 + DVU1464 0.51 -0.3
1,543,664 - DVU1464 0.55 +0.9
1,543,703 + DVU1464 0.58 +0.9
1,543,703 + DVU1464 0.58 +0.9
1,543,782 + DVU1464 0.64 +0.3
1,543,794 + DVU1464 0.65 +0.3
1,543,803 - DVU1464 0.66 +0.6
1,543,859 + DVU1464 0.70 -0.1
1,543,892 + DVU1464 0.73 +1.1
1,543,892 + DVU1464 0.73 +0.8
1,543,900 - DVU1464 0.74 +0.2
1,543,900 - DVU1464 0.74 +0.2
1,543,900 - DVU1464 0.74 +0.5
1,543,928 + DVU1464 0.76 +0.8
1,543,951 + DVU1464 0.78 -0.9
1,544,038 - DVU1464 0.85 +0.6
1,544,045 + DVU1464 0.86 +0.3
1,544,053 - DVU1464 0.86 +0.8
1,544,075 - DVU1464 0.88 +0.8
1,544,084 + DVU1464 0.89 +0.6
1,544,094 + DVU1464 0.89 -0.3
1,544,145 - +0.9
1,544,189 - +0.6
1,544,189 - +0.5
1,544,225 - +0.5
1,544,227 + +0.2
1,544,269 - +0.1
1,544,296 + +1.0
1,544,319 + +0.7
1,544,325 + +0.1
1,544,412 + DVU1465 0.11 +0.2
1,544,432 - DVU1465 0.12 +0.4
1,544,434 - DVU1465 0.13 -0.2
1,544,479 - DVU1465 0.16 +0.5
1,544,494 + DVU1465 0.17 +0.7
1,544,507 - DVU1465 0.18 +0.8
1,544,509 - DVU1465 0.18 -0.7
1,544,557 + DVU1465 0.22 -0.2
1,544,557 + DVU1465 0.22 +0.5
1,544,565 + DVU1465 0.22 -0.2
1,544,613 + DVU1465 0.26 +0.2
1,544,654 + DVU1465 0.29 +0.5
1,544,682 - DVU1465 0.31 +1.1
1,544,944 + DVU1465 0.51 -0.8
1,544,952 - DVU1465 0.52 +0.6
1,544,952 - DVU1465 0.52 +0.6
1,544,958 + DVU1465 0.52 -0.5
1,544,990 - DVU1465 0.54 +0.9
1,544,992 + DVU1465 0.55 +1.0
1,545,012 + DVU1465 0.56 +0.8
1,545,020 - DVU1465 0.57 +1.2
1,545,020 - DVU1465 0.57 +0.6
1,545,020 - DVU1465 0.57 +0.8
1,545,064 + DVU1465 0.60 +0.5
1,545,088 - DVU1465 0.62 +0.5
1,545,123 + DVU1465 0.64 +1.0
1,545,123 + DVU1465 0.64 +0.5
1,545,131 - DVU1465 0.65 +0.7
1,545,185 - DVU1465 0.69 +0.3
1,545,258 - DVU1465 0.75 +0.2
1,545,420 + DVU1465 0.87 +0.5
1,545,458 + DVU1465 0.90 +0.6
1,545,466 - -0.5
1,545,590 + +0.2
1,545,698 - -0.2
1,545,717 + -0.6
1,545,731 + +0.2
1,545,842 + argB DVU1466 0.15 -4.2
1,545,859 - argB DVU1466 0.17 -2.4
1,546,186 + argB DVU1466 0.52 -5.2
1,546,360 - argB DVU1466 0.71 -1.2
1,546,370 - argB DVU1466 0.72 -0.3
1,546,485 + argB DVU1466 0.84 -3.3

Or see this region's nucleotide sequence