Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1158

Experiment: MoLS4 with L-Serine (N), without Molybdate/Tungstate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1157 and DVU1158 are separated by 255 nucleotidesDVU1158 and DVU1159 are separated by 182 nucleotidesDVU1159 and DVU1160 are separated by 175 nucleotides DVU1157: DVU1157 - sensory box histidine kinase (TIGR), at 1,248,807 to 1,252,064 DVU1157 DVU1158: DVU1158 - hypothetical protein (TIGR), at 1,252,320 to 1,252,634 DVU1158 DVU1159: DVU1159 - hypothetical protein (TIGR), at 1,252,817 to 1,252,963 DVU1159 DVU1160: DVU1160 - urea transporter, putative (TIGR), at 1,253,139 to 1,254,152 DVU1160 Position (kb) 1252 1253Strain fitness (log2 ratio) -2 -1 0 1at 1251.324 kb on - strand, within DVU1157at 1251.365 kb on + strand, within DVU1157at 1251.385 kb on + strand, within DVU1157at 1251.408 kb on + strand, within DVU1157at 1251.466 kb on + strand, within DVU1157at 1251.484 kb on - strand, within DVU1157at 1251.484 kb on - strand, within DVU1157at 1251.508 kb on + strand, within DVU1157at 1251.528 kb on + strand, within DVU1157at 1251.534 kb on + strand, within DVU1157at 1251.598 kb on - strand, within DVU1157at 1251.662 kb on - strand, within DVU1157at 1251.671 kb on - strand, within DVU1157at 1251.672 kb on - strand, within DVU1157at 1251.768 kb on - strandat 1251.812 kb on + strandat 1251.847 kb on + strandat 1251.885 kb on + strandat 1251.912 kb on - strandat 1251.974 kb on - strandat 1252.056 kb on + strandat 1252.074 kb on - strandat 1252.124 kb on + strandat 1252.176 kb on + strandat 1252.230 kb on - strandat 1252.254 kb on - strandat 1252.483 kb on - strand, within DVU1158at 1252.553 kb on + strand, within DVU1158at 1252.632 kb on - strandat 1252.757 kb on + strandat 1252.774 kb on - strandat 1252.830 kb on + strandat 1252.870 kb on - strand, within DVU1159at 1253.002 kb on + strandat 1253.045 kb on + strandat 1253.069 kb on + strandat 1253.266 kb on + strand, within DVU1160at 1253.266 kb on + strand, within DVU1160at 1253.271 kb on + strand, within DVU1160at 1253.363 kb on - strand, within DVU1160at 1253.409 kb on + strand, within DVU1160at 1253.433 kb on - strand, within DVU1160at 1253.479 kb on + strand, within DVU1160at 1253.479 kb on + strand, within DVU1160at 1253.492 kb on + strand, within DVU1160at 1253.516 kb on + strand, within DVU1160at 1253.516 kb on + strand, within DVU1160at 1253.580 kb on - strand, within DVU1160at 1253.602 kb on + strand, within DVU1160at 1253.610 kb on - strand, within DVU1160at 1253.633 kb on + strand, within DVU1160

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Serine (N), without Molybdate/Tungstate
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1,251,324 - DVU1157 0.77 -2.0
1,251,365 + DVU1157 0.79 -0.4
1,251,385 + DVU1157 0.79 -0.6
1,251,408 + DVU1157 0.80 +0.2
1,251,466 + DVU1157 0.82 -0.7
1,251,484 - DVU1157 0.82 -0.0
1,251,484 - DVU1157 0.82 -2.4
1,251,508 + DVU1157 0.83 +0.4
1,251,528 + DVU1157 0.84 -0.9
1,251,534 + DVU1157 0.84 +0.3
1,251,598 - DVU1157 0.86 -0.1
1,251,662 - DVU1157 0.88 -0.2
1,251,671 - DVU1157 0.88 -0.3
1,251,672 - DVU1157 0.88 +0.1
1,251,768 - -0.2
1,251,812 + +0.2
1,251,847 + +0.5
1,251,885 + -0.2
1,251,912 - +0.0
1,251,974 - -0.3
1,252,056 + +1.5
1,252,074 - -0.6
1,252,124 + +0.2
1,252,176 + -0.4
1,252,230 - +0.4
1,252,254 - -1.6
1,252,483 - DVU1158 0.52 -2.0
1,252,553 + DVU1158 0.74 -2.0
1,252,632 - -0.2
1,252,757 + -0.3
1,252,774 - -1.2
1,252,830 + -1.3
1,252,870 - DVU1159 0.36 +1.1
1,253,002 + -0.2
1,253,045 + -0.9
1,253,069 + -0.7
1,253,266 + DVU1160 0.13 +1.4
1,253,266 + DVU1160 0.13 -0.0
1,253,271 + DVU1160 0.13 +0.3
1,253,363 - DVU1160 0.22 -0.8
1,253,409 + DVU1160 0.27 +0.1
1,253,433 - DVU1160 0.29 -0.4
1,253,479 + DVU1160 0.34 +0.5
1,253,479 + DVU1160 0.34 -1.3
1,253,492 + DVU1160 0.35 +0.0
1,253,516 + DVU1160 0.37 +0.6
1,253,516 + DVU1160 0.37 +0.6
1,253,580 - DVU1160 0.43 -1.6
1,253,602 + DVU1160 0.46 -0.8
1,253,610 - DVU1160 0.46 +0.2
1,253,633 + DVU1160 0.49 -0.8

Or see this region's nucleotide sequence