Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0934

Experiment: MoLS4 with L-Serine (N), without Molybdate/Tungstate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDVU0933 and DVU0934 overlap by 20 nucleotidesDVU0934 and DVU0935 overlap by 4 nucleotides DVU0933: DVU0933 - response regulator (TIGR), at 1,023,539 to 1,024,783 DVU0933 DVU0934: DVU0934 - hypothetical protein (TIGR), at 1,024,764 to 1,025,024 DVU0934 DVU0935: DVU0935 - methyl-accepting chemotaxis protein (TIGR), at 1,025,021 to 1,027,525 DVU0935 Position (kb) 1024 1025 1026Strain fitness (log2 ratio) -2 -1 0 1at 1023.780 kb on + strand, within DVU0933at 1023.798 kb on - strand, within DVU0933at 1023.806 kb on + strand, within DVU0933at 1023.811 kb on + strand, within DVU0933at 1023.814 kb on - strand, within DVU0933at 1023.936 kb on - strand, within DVU0933at 1024.038 kb on + strand, within DVU0933at 1024.106 kb on + strand, within DVU0933at 1024.228 kb on + strand, within DVU0933at 1024.228 kb on + strand, within DVU0933at 1024.236 kb on - strand, within DVU0933at 1024.236 kb on - strand, within DVU0933at 1024.236 kb on - strand, within DVU0933at 1024.236 kb on - strand, within DVU0933at 1024.351 kb on + strand, within DVU0933at 1024.377 kb on + strand, within DVU0933at 1024.390 kb on + strand, within DVU0933at 1024.398 kb on - strand, within DVU0933at 1024.452 kb on + strand, within DVU0933at 1024.465 kb on + strand, within DVU0933at 1024.539 kb on - strand, within DVU0933at 1024.539 kb on - strand, within DVU0933at 1024.680 kb on + strandat 1024.716 kb on - strandat 1024.821 kb on - strand, within DVU0934at 1024.964 kb on + strand, within DVU0934at 1024.964 kb on + strand, within DVU0934at 1024.972 kb on - strand, within DVU0934at 1025.097 kb on - strandat 1025.102 kb on - strandat 1025.157 kb on + strandat 1025.187 kb on + strandat 1025.326 kb on + strand, within DVU0935at 1025.334 kb on - strand, within DVU0935at 1025.404 kb on - strand, within DVU0935at 1025.418 kb on - strand, within DVU0935at 1025.485 kb on + strand, within DVU0935at 1025.532 kb on + strand, within DVU0935at 1025.540 kb on - strand, within DVU0935at 1025.565 kb on + strand, within DVU0935at 1025.583 kb on - strand, within DVU0935at 1025.745 kb on + strand, within DVU0935at 1025.814 kb on + strand, within DVU0935at 1025.822 kb on - strand, within DVU0935

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Serine (N), without Molybdate/Tungstate
remove
1,023,780 + DVU0933 0.19 +0.0
1,023,798 - DVU0933 0.21 -0.1
1,023,806 + DVU0933 0.21 -0.1
1,023,811 + DVU0933 0.22 -0.4
1,023,814 - DVU0933 0.22 -2.2
1,023,936 - DVU0933 0.32 -0.3
1,024,038 + DVU0933 0.40 -0.5
1,024,106 + DVU0933 0.46 -0.5
1,024,228 + DVU0933 0.55 -0.7
1,024,228 + DVU0933 0.55 -0.3
1,024,236 - DVU0933 0.56 -0.5
1,024,236 - DVU0933 0.56 +0.0
1,024,236 - DVU0933 0.56 -0.7
1,024,236 - DVU0933 0.56 -0.3
1,024,351 + DVU0933 0.65 -0.7
1,024,377 + DVU0933 0.67 -0.2
1,024,390 + DVU0933 0.68 -0.1
1,024,398 - DVU0933 0.69 -0.6
1,024,452 + DVU0933 0.73 +0.2
1,024,465 + DVU0933 0.74 -0.0
1,024,539 - DVU0933 0.80 -0.4
1,024,539 - DVU0933 0.80 -1.2
1,024,680 + +0.1
1,024,716 - -0.0
1,024,821 - DVU0934 0.22 -0.6
1,024,964 + DVU0934 0.77 -0.8
1,024,964 + DVU0934 0.77 -0.3
1,024,972 - DVU0934 0.80 -0.9
1,025,097 - -0.1
1,025,102 - -0.2
1,025,157 + +0.1
1,025,187 + -0.4
1,025,326 + DVU0935 0.12 +0.1
1,025,334 - DVU0935 0.12 -0.7
1,025,404 - DVU0935 0.15 -0.4
1,025,418 - DVU0935 0.16 +1.7
1,025,485 + DVU0935 0.19 +0.6
1,025,532 + DVU0935 0.20 -0.7
1,025,540 - DVU0935 0.21 -0.3
1,025,565 + DVU0935 0.22 -1.1
1,025,583 - DVU0935 0.22 -0.4
1,025,745 + DVU0935 0.29 -1.3
1,025,814 + DVU0935 0.32 -2.1
1,025,822 - DVU0935 0.32 +0.5

Or see this region's nucleotide sequence