Experiment: KB with Rifampicin 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4878 and Psyr_4879 are separated by 433 nucleotides Psyr_4879 and Psyr_4880 are separated by 145 nucleotides Psyr_4880 and Psyr_4881 overlap by 2 nucleotides
Psyr_4878: Psyr_4878 - outer membrane porin, at 5,789,629 to 5,790,975
_4878
Psyr_4879: Psyr_4879 - hypothetical protein, at 5,791,409 to 5,791,852
_4879
Psyr_4880: Psyr_4880 - conserved hypothetical protein, at 5,791,998 to 5,792,438
_4880
Psyr_4881: Psyr_4881 - RNA methyltransferase TrmH, group 2, at 5,792,437 to 5,792,892
_4881
Position (kb) 5791
5792 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5790.471 kb on + strand, within Psyr_4878 at 5790.471 kb on + strand, within Psyr_4878 at 5790.472 kb on - strand, within Psyr_4878 at 5790.576 kb on + strand, within Psyr_4878 at 5790.597 kb on + strand, within Psyr_4878 at 5790.660 kb on + strand, within Psyr_4878 at 5790.660 kb on + strand, within Psyr_4878 at 5790.660 kb on + strand, within Psyr_4878 at 5790.660 kb on + strand, within Psyr_4878 at 5790.660 kb on + strand, within Psyr_4878 at 5790.678 kb on + strand, within Psyr_4878 at 5790.678 kb on + strand, within Psyr_4878 at 5790.681 kb on + strand, within Psyr_4878 at 5790.681 kb on + strand, within Psyr_4878 at 5790.681 kb on + strand, within Psyr_4878 at 5790.681 kb on + strand, within Psyr_4878 at 5790.681 kb on + strand, within Psyr_4878 at 5790.681 kb on + strand, within Psyr_4878 at 5790.681 kb on + strand, within Psyr_4878 at 5790.682 kb on - strand, within Psyr_4878 at 5790.697 kb on - strand, within Psyr_4878 at 5790.733 kb on + strand, within Psyr_4878 at 5790.775 kb on - strand, within Psyr_4878 at 5790.863 kb on + strand at 5790.863 kb on + strand at 5790.863 kb on + strand at 5790.863 kb on + strand at 5790.864 kb on - strand at 5790.870 kb on + strand at 5790.871 kb on - strand at 5790.871 kb on - strand at 5790.892 kb on - strand at 5790.892 kb on - strand at 5790.934 kb on + strand at 5790.934 kb on + strand at 5790.934 kb on + strand at 5790.935 kb on - strand at 5790.935 kb on - strand at 5790.976 kb on + strand at 5790.976 kb on + strand at 5790.976 kb on + strand at 5790.976 kb on + strand at 5790.977 kb on - strand at 5790.977 kb on - strand at 5790.977 kb on - strand at 5790.979 kb on + strand at 5790.979 kb on + strand at 5790.979 kb on + strand at 5790.980 kb on - strand at 5790.980 kb on - strand at 5790.980 kb on - strand at 5790.980 kb on - strand at 5790.980 kb on - strand at 5790.980 kb on - strand at 5791.004 kb on + strand at 5791.006 kb on + strand at 5791.043 kb on - strand at 5791.102 kb on + strand at 5791.103 kb on - strand at 5791.103 kb on - strand at 5791.103 kb on - strand at 5791.240 kb on + strand at 5791.258 kb on + strand at 5791.374 kb on + strand at 5791.375 kb on - strand at 5791.375 kb on - strand at 5791.405 kb on + strand at 5791.405 kb on + strand at 5791.406 kb on - strand at 5791.406 kb on - strand at 5791.406 kb on - strand at 5791.525 kb on + strand, within Psyr_4879 at 5791.730 kb on + strand, within Psyr_4879 at 5791.730 kb on + strand, within Psyr_4879 at 5791.731 kb on - strand, within Psyr_4879 at 5791.731 kb on - strand, within Psyr_4879 at 5791.731 kb on - strand, within Psyr_4879 at 5791.731 kb on - strand, within Psyr_4879 at 5791.776 kb on - strand, within Psyr_4879 at 5791.811 kb on - strand at 5791.817 kb on - strand at 5791.835 kb on + strand at 5791.836 kb on - strand at 5791.851 kb on - strand at 5791.938 kb on + strand at 5791.938 kb on + strand at 5791.938 kb on + strand at 5791.938 kb on + strand at 5791.938 kb on + strand at 5791.938 kb on + strand at 5791.939 kb on - strand at 5791.939 kb on - strand at 5791.942 kb on + strand at 5791.943 kb on - strand at 5791.943 kb on - strand at 5791.943 kb on - strand at 5791.943 kb on - strand at 5791.943 kb on - strand at 5791.943 kb on - strand at 5791.945 kb on + strand at 5791.945 kb on + strand at 5791.945 kb on + strand at 5791.945 kb on + strand at 5791.945 kb on + strand at 5791.945 kb on + strand at 5791.945 kb on + strand at 5791.946 kb on - strand at 5791.946 kb on - strand at 5791.946 kb on - strand at 5791.946 kb on - strand at 5791.946 kb on - strand at 5791.971 kb on + strand at 5791.971 kb on + strand at 5791.972 kb on - strand at 5791.972 kb on - strand at 5791.999 kb on + strand at 5791.999 kb on + strand at 5791.999 kb on + strand at 5791.999 kb on + strand at 5791.999 kb on + strand at 5791.999 kb on + strand at 5792.000 kb on - strand at 5792.000 kb on - strand at 5792.118 kb on + strand, within Psyr_4880 at 5792.119 kb on - strand, within Psyr_4880 at 5792.119 kb on - strand, within Psyr_4880 at 5792.194 kb on - strand, within Psyr_4880 at 5792.194 kb on - strand, within Psyr_4880 at 5792.194 kb on - strand, within Psyr_4880 at 5792.373 kb on + strand, within Psyr_4880 at 5792.374 kb on - strand, within Psyr_4880 at 5792.384 kb on + strand, within Psyr_4880 at 5792.385 kb on - strand, within Psyr_4880 at 5792.403 kb on - strand at 5792.403 kb on - strand at 5792.499 kb on - strand, within Psyr_4881 at 5792.596 kb on + strand, within Psyr_4881 at 5792.596 kb on + strand, within Psyr_4881 at 5792.596 kb on + strand, within Psyr_4881 at 5792.596 kb on + strand, within Psyr_4881 at 5792.597 kb on - strand, within Psyr_4881 at 5792.829 kb on + strand, within Psyr_4881
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Rifampicin 0.1 mg/ml remove 5,790,471 + Psyr_4878 0.63 -0.8 5,790,471 + Psyr_4878 0.63 -0.3 5,790,472 - Psyr_4878 0.63 +1.7 5,790,576 + Psyr_4878 0.70 +0.3 5,790,597 + Psyr_4878 0.72 -0.5 5,790,660 + Psyr_4878 0.77 +0.3 5,790,660 + Psyr_4878 0.77 +0.1 5,790,660 + Psyr_4878 0.77 -0.5 5,790,660 + Psyr_4878 0.77 -0.3 5,790,660 + Psyr_4878 0.77 -0.1 5,790,678 + Psyr_4878 0.78 +0.0 5,790,678 + Psyr_4878 0.78 -0.4 5,790,681 + Psyr_4878 0.78 -0.0 5,790,681 + Psyr_4878 0.78 +0.3 5,790,681 + Psyr_4878 0.78 +0.1 5,790,681 + Psyr_4878 0.78 +0.1 5,790,681 + Psyr_4878 0.78 -0.7 5,790,681 + Psyr_4878 0.78 +0.8 5,790,681 + Psyr_4878 0.78 -0.8 5,790,682 - Psyr_4878 0.78 -2.0 5,790,697 - Psyr_4878 0.79 +0.8 5,790,733 + Psyr_4878 0.82 +0.3 5,790,775 - Psyr_4878 0.85 -0.6 5,790,863 + +1.4 5,790,863 + +0.5 5,790,863 + -1.4 5,790,863 + +2.3 5,790,864 - +2.7 5,790,870 + +1.8 5,790,871 - +1.1 5,790,871 - -0.2 5,790,892 - +1.3 5,790,892 - +0.1 5,790,934 + +0.1 5,790,934 + +2.0 5,790,934 + -0.4 5,790,935 - +0.7 5,790,935 - -0.2 5,790,976 + -0.4 5,790,976 + -0.7 5,790,976 + -0.6 5,790,976 + -0.6 5,790,977 - -0.0 5,790,977 - +0.7 5,790,977 - +0.4 5,790,979 + +0.9 5,790,979 + +0.4 5,790,979 + -0.3 5,790,980 - +1.0 5,790,980 - -0.3 5,790,980 - -0.4 5,790,980 - +0.1 5,790,980 - +0.6 5,790,980 - -0.4 5,791,004 + -0.2 5,791,006 + +0.2 5,791,043 - -1.0 5,791,102 + -0.3 5,791,103 - -1.4 5,791,103 - +0.1 5,791,103 - +0.5 5,791,240 + -0.1 5,791,258 + +0.2 5,791,374 + -0.8 5,791,375 - +0.2 5,791,375 - -1.0 5,791,405 + +1.3 5,791,405 + +0.7 5,791,406 - -0.5 5,791,406 - -0.8 5,791,406 - -0.7 5,791,525 + Psyr_4879 0.26 +0.3 5,791,730 + Psyr_4879 0.72 -0.6 5,791,730 + Psyr_4879 0.72 +0.4 5,791,731 - Psyr_4879 0.73 -1.2 5,791,731 - Psyr_4879 0.73 -1.8 5,791,731 - Psyr_4879 0.73 -1.6 5,791,731 - Psyr_4879 0.73 -0.6 5,791,776 - Psyr_4879 0.83 +0.3 5,791,811 - -0.9 5,791,817 - -0.4 5,791,835 + -0.3 5,791,836 - -0.3 5,791,851 - -2.4 5,791,938 + +0.4 5,791,938 + +0.6 5,791,938 + -0.9 5,791,938 + -0.1 5,791,938 + +0.3 5,791,938 + +0.5 5,791,939 - -0.3 5,791,939 - -0.5 5,791,942 + +1.8 5,791,943 - -0.5 5,791,943 - -1.5 5,791,943 - +0.3 5,791,943 - -0.6 5,791,943 - -0.6 5,791,943 - -1.4 5,791,945 + +1.5 5,791,945 + -0.0 5,791,945 + +0.2 5,791,945 + +2.7 5,791,945 + +2.3 5,791,945 + +2.7 5,791,945 + +0.6 5,791,946 - -0.6 5,791,946 - -0.4 5,791,946 - +0.3 5,791,946 - +0.5 5,791,946 - -0.2 5,791,971 + +0.9 5,791,971 + +0.2 5,791,972 - -0.0 5,791,972 - +0.4 5,791,999 + -0.0 5,791,999 + +0.5 5,791,999 + +1.2 5,791,999 + +0.5 5,791,999 + -0.6 5,791,999 + +0.2 5,792,000 - +0.6 5,792,000 - +0.7 5,792,118 + Psyr_4880 0.27 -0.8 5,792,119 - Psyr_4880 0.27 -2.7 5,792,119 - Psyr_4880 0.27 -0.6 5,792,194 - Psyr_4880 0.44 -0.8 5,792,194 - Psyr_4880 0.44 -0.0 5,792,194 - Psyr_4880 0.44 -1.6 5,792,373 + Psyr_4880 0.85 -0.0 5,792,374 - Psyr_4880 0.85 +0.8 5,792,384 + Psyr_4880 0.88 -0.4 5,792,385 - Psyr_4880 0.88 -0.3 5,792,403 - +0.6 5,792,403 - -0.5 5,792,499 - Psyr_4881 0.14 +0.1 5,792,596 + Psyr_4881 0.35 +0.5 5,792,596 + Psyr_4881 0.35 +0.2 5,792,596 + Psyr_4881 0.35 +0.0 5,792,596 + Psyr_4881 0.35 -0.0 5,792,597 - Psyr_4881 0.35 -0.0 5,792,829 + Psyr_4881 0.86 -0.9
Or see this region's nucleotide sequence