Experiment: KB with Rifampicin 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4802 and Psyr_4803 are separated by 24 nucleotides Psyr_4803 and Psyr_4804 are separated by 291 nucleotides Psyr_4804 and Psyr_4805 are separated by 112 nucleotides
Psyr_4802: Psyr_4802 - Secretion protein HlyD, at 5,691,982 to 5,693,256
_4802
Psyr_4803: Psyr_4803 - Heavy metal efflux pump CzcA, at 5,693,281 to 5,696,445
_4803
Psyr_4804: Psyr_4804 - conserved hypothetical protein, at 5,696,737 to 5,697,324
_4804
Psyr_4805: Psyr_4805 - YD repeat protein, at 5,697,437 to 5,701,126
_4805
Position (kb) 5693
5694
5695
5696
5697 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5692.576 kb on + strand, within Psyr_4802 at 5692.576 kb on + strand, within Psyr_4802 at 5692.577 kb on - strand, within Psyr_4802 at 5692.577 kb on - strand, within Psyr_4802 at 5692.577 kb on - strand, within Psyr_4802 at 5692.577 kb on - strand, within Psyr_4802 at 5693.272 kb on + strand at 5693.272 kb on + strand at 5693.272 kb on + strand at 5693.273 kb on - strand at 5693.372 kb on - strand at 5693.414 kb on + strand at 5693.414 kb on + strand at 5693.414 kb on + strand at 5693.414 kb on + strand at 5693.414 kb on + strand at 5693.414 kb on + strand at 5693.415 kb on - strand at 5693.415 kb on - strand at 5693.896 kb on + strand, within Psyr_4803 at 5693.897 kb on - strand, within Psyr_4803 at 5693.962 kb on + strand, within Psyr_4803 at 5693.962 kb on + strand, within Psyr_4803 at 5693.962 kb on + strand, within Psyr_4803 at 5693.962 kb on + strand, within Psyr_4803 at 5693.963 kb on - strand, within Psyr_4803 at 5693.963 kb on - strand, within Psyr_4803 at 5693.963 kb on - strand, within Psyr_4803 at 5693.963 kb on - strand, within Psyr_4803 at 5693.963 kb on - strand, within Psyr_4803 at 5693.965 kb on - strand, within Psyr_4803 at 5693.965 kb on - strand, within Psyr_4803 at 5693.966 kb on + strand, within Psyr_4803 at 5693.966 kb on + strand, within Psyr_4803 at 5693.966 kb on + strand, within Psyr_4803 at 5693.966 kb on + strand, within Psyr_4803 at 5693.966 kb on + strand, within Psyr_4803 at 5693.966 kb on + strand, within Psyr_4803 at 5693.966 kb on + strand, within Psyr_4803 at 5693.966 kb on + strand, within Psyr_4803 at 5693.966 kb on + strand, within Psyr_4803 at 5693.966 kb on + strand, within Psyr_4803 at 5693.966 kb on + strand, within Psyr_4803 at 5693.966 kb on + strand, within Psyr_4803 at 5693.966 kb on + strand, within Psyr_4803 at 5693.966 kb on + strand, within Psyr_4803 at 5693.966 kb on + strand, within Psyr_4803 at 5693.967 kb on - strand, within Psyr_4803 at 5693.967 kb on - strand, within Psyr_4803 at 5693.967 kb on - strand, within Psyr_4803 at 5693.967 kb on - strand, within Psyr_4803 at 5693.967 kb on - strand, within Psyr_4803 at 5693.967 kb on - strand, within Psyr_4803 at 5693.967 kb on - strand, within Psyr_4803 at 5693.967 kb on - strand, within Psyr_4803 at 5693.967 kb on - strand, within Psyr_4803 at 5693.967 kb on - strand, within Psyr_4803 at 5693.967 kb on - strand, within Psyr_4803 at 5693.967 kb on - strand, within Psyr_4803 at 5693.967 kb on - strand, within Psyr_4803 at 5693.967 kb on - strand, within Psyr_4803 at 5693.987 kb on + strand, within Psyr_4803 at 5693.987 kb on + strand, within Psyr_4803 at 5694.252 kb on - strand, within Psyr_4803 at 5694.252 kb on - strand, within Psyr_4803 at 5694.269 kb on - strand, within Psyr_4803 at 5694.269 kb on - strand, within Psyr_4803 at 5695.007 kb on + strand, within Psyr_4803 at 5695.007 kb on + strand, within Psyr_4803 at 5695.007 kb on + strand, within Psyr_4803 at 5695.007 kb on + strand, within Psyr_4803 at 5695.007 kb on + strand, within Psyr_4803 at 5695.008 kb on - strand, within Psyr_4803 at 5695.008 kb on - strand, within Psyr_4803 at 5695.008 kb on - strand, within Psyr_4803 at 5695.008 kb on - strand, within Psyr_4803 at 5695.165 kb on + strand, within Psyr_4803 at 5695.165 kb on + strand, within Psyr_4803 at 5695.165 kb on + strand, within Psyr_4803 at 5695.165 kb on + strand, within Psyr_4803 at 5695.166 kb on - strand, within Psyr_4803 at 5695.166 kb on - strand, within Psyr_4803 at 5695.166 kb on - strand, within Psyr_4803 at 5695.166 kb on - strand, within Psyr_4803 at 5695.166 kb on - strand, within Psyr_4803 at 5695.166 kb on - strand, within Psyr_4803 at 5695.166 kb on - strand, within Psyr_4803 at 5695.166 kb on - strand, within Psyr_4803 at 5695.166 kb on - strand, within Psyr_4803 at 5695.166 kb on - strand, within Psyr_4803 at 5695.166 kb on - strand, within Psyr_4803 at 5695.166 kb on - strand, within Psyr_4803 at 5695.270 kb on + strand, within Psyr_4803 at 5695.270 kb on + strand, within Psyr_4803 at 5695.271 kb on - strand, within Psyr_4803 at 5695.271 kb on - strand, within Psyr_4803 at 5695.271 kb on - strand, within Psyr_4803 at 5695.340 kb on + strand, within Psyr_4803 at 5695.387 kb on - strand, within Psyr_4803 at 5695.570 kb on + strand, within Psyr_4803 at 5695.571 kb on - strand, within Psyr_4803 at 5695.571 kb on - strand, within Psyr_4803 at 5695.571 kb on - strand, within Psyr_4803 at 5695.653 kb on + strand, within Psyr_4803 at 5695.653 kb on + strand, within Psyr_4803 at 5695.655 kb on + strand, within Psyr_4803 at 5695.655 kb on + strand, within Psyr_4803 at 5695.671 kb on + strand, within Psyr_4803 at 5695.671 kb on + strand, within Psyr_4803 at 5695.672 kb on - strand, within Psyr_4803 at 5695.672 kb on - strand, within Psyr_4803 at 5695.971 kb on - strand, within Psyr_4803 at 5696.312 kb on + strand at 5696.313 kb on - strand at 5696.392 kb on + strand at 5696.393 kb on - strand at 5696.393 kb on - strand at 5696.393 kb on - strand at 5696.444 kb on - strand at 5696.513 kb on - strand at 5696.562 kb on + strand at 5696.562 kb on + strand at 5696.563 kb on - strand at 5696.563 kb on - strand at 5696.633 kb on + strand at 5696.633 kb on + strand at 5696.633 kb on + strand at 5696.633 kb on + strand at 5696.634 kb on - strand at 5696.634 kb on - strand at 5696.634 kb on - strand at 5696.635 kb on + strand at 5696.635 kb on + strand at 5696.635 kb on + strand at 5696.635 kb on + strand at 5696.635 kb on + strand at 5696.635 kb on + strand at 5696.635 kb on + strand at 5696.635 kb on + strand at 5696.635 kb on + strand at 5696.635 kb on + strand at 5696.635 kb on + strand at 5696.635 kb on + strand at 5696.635 kb on + strand at 5696.635 kb on + strand at 5696.635 kb on + strand at 5696.635 kb on + strand at 5696.635 kb on + strand at 5696.636 kb on - strand at 5696.636 kb on - strand at 5696.636 kb on - strand at 5696.636 kb on - strand at 5696.636 kb on - strand at 5696.636 kb on - strand at 5696.636 kb on - strand at 5696.636 kb on - strand at 5696.698 kb on + strand at 5696.698 kb on + strand at 5696.699 kb on - strand at 5696.699 kb on - strand at 5696.708 kb on + strand at 5696.708 kb on + strand at 5696.708 kb on + strand at 5696.708 kb on + strand at 5696.708 kb on + strand at 5696.708 kb on + strand at 5696.708 kb on + strand at 5696.708 kb on + strand at 5696.708 kb on + strand at 5696.708 kb on + strand at 5696.709 kb on - strand at 5696.709 kb on - strand at 5696.709 kb on - strand at 5696.709 kb on - strand at 5696.709 kb on - strand at 5696.709 kb on - strand at 5696.709 kb on - strand at 5696.709 kb on - strand at 5696.709 kb on - strand at 5696.709 kb on - strand at 5696.709 kb on - strand at 5696.709 kb on - strand at 5696.709 kb on - strand at 5696.709 kb on - strand at 5696.709 kb on - strand at 5696.709 kb on - strand at 5696.709 kb on - strand at 5696.709 kb on - strand at 5696.709 kb on - strand at 5696.737 kb on - strand at 5696.737 kb on - strand at 5696.751 kb on + strand at 5696.751 kb on + strand at 5696.751 kb on + strand at 5696.752 kb on - strand at 5696.752 kb on - strand at 5696.752 kb on - strand at 5696.752 kb on - strand at 5696.752 kb on - strand at 5696.752 kb on - strand at 5696.755 kb on + strand at 5696.755 kb on + strand at 5696.755 kb on + strand at 5696.756 kb on - strand at 5696.756 kb on - strand at 5697.011 kb on + strand, within Psyr_4804 at 5697.011 kb on + strand, within Psyr_4804 at 5697.011 kb on + strand, within Psyr_4804 at 5697.012 kb on - strand, within Psyr_4804 at 5697.329 kb on + strand at 5697.329 kb on + strand at 5697.330 kb on - strand at 5697.330 kb on - strand at 5697.330 kb on - strand at 5697.330 kb on - strand at 5697.410 kb on + strand at 5697.411 kb on - strand at 5697.411 kb on - strand at 5697.411 kb on - strand at 5697.411 kb on - strand at 5697.411 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Rifampicin 0.1 mg/ml remove 5,692,576 + Psyr_4802 0.47 -0.5 5,692,576 + Psyr_4802 0.47 -0.2 5,692,577 - Psyr_4802 0.47 -0.5 5,692,577 - Psyr_4802 0.47 -0.1 5,692,577 - Psyr_4802 0.47 -1.3 5,692,577 - Psyr_4802 0.47 +1.0 5,693,272 + +0.2 5,693,272 + +0.7 5,693,272 + -0.2 5,693,273 - +0.6 5,693,372 - +0.7 5,693,414 + -1.7 5,693,414 + -0.6 5,693,414 + -0.3 5,693,414 + +0.1 5,693,414 + -0.1 5,693,414 + +1.2 5,693,415 - -0.3 5,693,415 - -0.7 5,693,896 + Psyr_4803 0.19 -1.3 5,693,897 - Psyr_4803 0.19 +1.0 5,693,962 + Psyr_4803 0.22 -0.5 5,693,962 + Psyr_4803 0.22 -0.3 5,693,962 + Psyr_4803 0.22 -0.4 5,693,962 + Psyr_4803 0.22 +1.2 5,693,963 - Psyr_4803 0.22 -0.9 5,693,963 - Psyr_4803 0.22 -1.5 5,693,963 - Psyr_4803 0.22 +0.3 5,693,963 - Psyr_4803 0.22 -0.4 5,693,963 - Psyr_4803 0.22 -0.4 5,693,965 - Psyr_4803 0.22 +0.9 5,693,965 - Psyr_4803 0.22 +0.1 5,693,966 + Psyr_4803 0.22 +0.7 5,693,966 + Psyr_4803 0.22 +0.2 5,693,966 + Psyr_4803 0.22 -0.4 5,693,966 + Psyr_4803 0.22 -0.5 5,693,966 + Psyr_4803 0.22 -0.1 5,693,966 + Psyr_4803 0.22 -0.5 5,693,966 + Psyr_4803 0.22 -0.6 5,693,966 + Psyr_4803 0.22 -0.1 5,693,966 + Psyr_4803 0.22 -1.3 5,693,966 + Psyr_4803 0.22 +0.7 5,693,966 + Psyr_4803 0.22 +2.6 5,693,966 + Psyr_4803 0.22 +0.5 5,693,966 + Psyr_4803 0.22 +0.8 5,693,966 + Psyr_4803 0.22 +1.0 5,693,966 + Psyr_4803 0.22 -0.3 5,693,967 - Psyr_4803 0.22 +0.7 5,693,967 - Psyr_4803 0.22 -0.3 5,693,967 - Psyr_4803 0.22 +0.2 5,693,967 - Psyr_4803 0.22 +0.2 5,693,967 - Psyr_4803 0.22 -1.6 5,693,967 - Psyr_4803 0.22 +0.8 5,693,967 - Psyr_4803 0.22 +0.7 5,693,967 - Psyr_4803 0.22 -1.4 5,693,967 - Psyr_4803 0.22 -0.6 5,693,967 - Psyr_4803 0.22 +0.6 5,693,967 - Psyr_4803 0.22 +1.0 5,693,967 - Psyr_4803 0.22 -0.9 5,693,967 - Psyr_4803 0.22 +0.7 5,693,967 - Psyr_4803 0.22 +0.4 5,693,987 + Psyr_4803 0.22 -1.0 5,693,987 + Psyr_4803 0.22 -1.2 5,694,252 - Psyr_4803 0.31 +0.3 5,694,252 - Psyr_4803 0.31 +0.8 5,694,269 - Psyr_4803 0.31 -0.4 5,694,269 - Psyr_4803 0.31 -0.4 5,695,007 + Psyr_4803 0.55 -0.0 5,695,007 + Psyr_4803 0.55 -0.8 5,695,007 + Psyr_4803 0.55 -0.9 5,695,007 + Psyr_4803 0.55 -3.1 5,695,007 + Psyr_4803 0.55 +0.3 5,695,008 - Psyr_4803 0.55 -0.8 5,695,008 - Psyr_4803 0.55 -0.6 5,695,008 - Psyr_4803 0.55 +0.6 5,695,008 - Psyr_4803 0.55 -2.7 5,695,165 + Psyr_4803 0.60 -0.0 5,695,165 + Psyr_4803 0.60 -1.2 5,695,165 + Psyr_4803 0.60 +0.2 5,695,165 + Psyr_4803 0.60 -0.0 5,695,166 - Psyr_4803 0.60 +1.4 5,695,166 - Psyr_4803 0.60 -0.4 5,695,166 - Psyr_4803 0.60 +0.4 5,695,166 - Psyr_4803 0.60 -0.8 5,695,166 - Psyr_4803 0.60 -0.6 5,695,166 - Psyr_4803 0.60 +0.2 5,695,166 - Psyr_4803 0.60 -0.0 5,695,166 - Psyr_4803 0.60 +0.6 5,695,166 - Psyr_4803 0.60 -0.0 5,695,166 - Psyr_4803 0.60 -1.1 5,695,166 - Psyr_4803 0.60 +1.0 5,695,166 - Psyr_4803 0.60 +0.6 5,695,270 + Psyr_4803 0.63 +0.4 5,695,270 + Psyr_4803 0.63 -1.5 5,695,271 - Psyr_4803 0.63 -1.3 5,695,271 - Psyr_4803 0.63 -0.8 5,695,271 - Psyr_4803 0.63 -1.1 5,695,340 + Psyr_4803 0.65 +0.8 5,695,387 - Psyr_4803 0.67 +1.3 5,695,570 + Psyr_4803 0.72 -0.3 5,695,571 - Psyr_4803 0.72 -0.0 5,695,571 - Psyr_4803 0.72 -0.6 5,695,571 - Psyr_4803 0.72 -1.4 5,695,653 + Psyr_4803 0.75 +0.7 5,695,653 + Psyr_4803 0.75 +0.6 5,695,655 + Psyr_4803 0.75 -1.0 5,695,655 + Psyr_4803 0.75 -2.7 5,695,671 + Psyr_4803 0.76 +0.1 5,695,671 + Psyr_4803 0.76 -0.3 5,695,672 - Psyr_4803 0.76 +0.1 5,695,672 - Psyr_4803 0.76 +1.0 5,695,971 - Psyr_4803 0.85 -0.1 5,696,312 + -1.0 5,696,313 - -0.3 5,696,392 + -0.6 5,696,393 - +1.1 5,696,393 - +0.2 5,696,393 - -0.4 5,696,444 - +1.5 5,696,513 - -0.0 5,696,562 + -1.8 5,696,562 + +1.0 5,696,563 - -1.3 5,696,563 - -0.3 5,696,633 + -0.1 5,696,633 + -0.3 5,696,633 + +0.3 5,696,633 + -1.0 5,696,634 - +1.0 5,696,634 - +0.5 5,696,634 - +0.8 5,696,635 + -0.1 5,696,635 + -0.5 5,696,635 + -0.2 5,696,635 + -0.8 5,696,635 + +0.5 5,696,635 + -0.3 5,696,635 + +0.8 5,696,635 + +0.3 5,696,635 + -0.4 5,696,635 + +0.5 5,696,635 + +0.0 5,696,635 + -0.2 5,696,635 + -1.4 5,696,635 + -0.5 5,696,635 + -1.8 5,696,635 + -0.0 5,696,635 + -0.3 5,696,636 - +0.4 5,696,636 - -1.0 5,696,636 - +0.3 5,696,636 - -1.4 5,696,636 - -0.2 5,696,636 - +0.7 5,696,636 - -0.1 5,696,636 - -0.4 5,696,698 + +1.1 5,696,698 + -1.6 5,696,699 - +0.3 5,696,699 - +1.0 5,696,708 + -0.4 5,696,708 + +0.1 5,696,708 + -0.9 5,696,708 + +0.1 5,696,708 + -1.4 5,696,708 + +0.2 5,696,708 + +0.6 5,696,708 + -0.5 5,696,708 + +2.6 5,696,708 + +0.3 5,696,709 - +1.0 5,696,709 - -0.6 5,696,709 - -0.0 5,696,709 - +0.2 5,696,709 - +0.7 5,696,709 - +0.5 5,696,709 - -1.1 5,696,709 - -0.2 5,696,709 - -0.5 5,696,709 - +0.6 5,696,709 - -0.6 5,696,709 - -1.6 5,696,709 - +0.2 5,696,709 - -0.7 5,696,709 - -0.5 5,696,709 - -0.6 5,696,709 - -1.0 5,696,709 - -0.9 5,696,709 - -0.5 5,696,737 - -2.3 5,696,737 - +0.3 5,696,751 + +1.3 5,696,751 + -0.4 5,696,751 + -0.3 5,696,752 - +0.5 5,696,752 - -1.3 5,696,752 - +1.0 5,696,752 - -0.4 5,696,752 - -0.6 5,696,752 - -0.3 5,696,755 + -1.8 5,696,755 + -1.0 5,696,755 + +0.5 5,696,756 - -0.4 5,696,756 - -2.3 5,697,011 + Psyr_4804 0.47 +1.1 5,697,011 + Psyr_4804 0.47 -0.8 5,697,011 + Psyr_4804 0.47 -1.6 5,697,012 - Psyr_4804 0.47 -0.7 5,697,329 + +1.0 5,697,329 + -0.9 5,697,330 - -0.3 5,697,330 - -1.4 5,697,330 - +0.4 5,697,330 - -0.5 5,697,410 + -1.8 5,697,411 - +0.6 5,697,411 - -3.7 5,697,411 - -0.4 5,697,411 - -0.8 5,697,411 - +0.3
Or see this region's nucleotide sequence