Experiment: KB with Rifampicin 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4709 and Psyr_4710 are separated by 67 nucleotides Psyr_4710 and Psyr_4711 overlap by 4 nucleotides
Psyr_4709: Psyr_4709 - Substrate-binding region of ABC-type glycine betaine transport system, at 5,580,137 to 5,581,084
_4709
Psyr_4710: Psyr_4710 - Binding-protein-dependent transport systems inner membrane component, at 5,581,152 to 5,581,997
_4710
Psyr_4711: Psyr_4711 - Glycine betaine/L-proline transport ATP-binding subunit, at 5,581,994 to 5,583,172
_4711
Position (kb) 5581
5582 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5580.178 kb on + strand at 5580.190 kb on - strand at 5580.220 kb on + strand at 5580.220 kb on + strand at 5580.220 kb on + strand at 5580.257 kb on - strand, within Psyr_4709 at 5580.266 kb on - strand, within Psyr_4709 at 5580.266 kb on - strand, within Psyr_4709 at 5580.302 kb on + strand, within Psyr_4709 at 5580.302 kb on + strand, within Psyr_4709 at 5580.302 kb on + strand, within Psyr_4709 at 5580.303 kb on - strand, within Psyr_4709 at 5580.342 kb on - strand, within Psyr_4709 at 5580.342 kb on - strand, within Psyr_4709 at 5580.342 kb on - strand, within Psyr_4709 at 5580.476 kb on + strand, within Psyr_4709 at 5580.476 kb on + strand, within Psyr_4709 at 5580.477 kb on - strand, within Psyr_4709 at 5580.477 kb on - strand, within Psyr_4709 at 5580.477 kb on - strand, within Psyr_4709 at 5580.477 kb on - strand, within Psyr_4709 at 5580.477 kb on - strand, within Psyr_4709 at 5580.503 kb on + strand, within Psyr_4709 at 5580.503 kb on + strand, within Psyr_4709 at 5580.569 kb on + strand, within Psyr_4709 at 5580.569 kb on + strand, within Psyr_4709 at 5580.569 kb on + strand, within Psyr_4709 at 5580.569 kb on + strand, within Psyr_4709 at 5580.596 kb on - strand, within Psyr_4709 at 5580.779 kb on + strand, within Psyr_4709 at 5580.780 kb on - strand, within Psyr_4709 at 5580.815 kb on + strand, within Psyr_4709 at 5580.833 kb on + strand, within Psyr_4709 at 5580.833 kb on + strand, within Psyr_4709 at 5580.833 kb on + strand, within Psyr_4709 at 5580.833 kb on + strand, within Psyr_4709 at 5580.833 kb on + strand, within Psyr_4709 at 5580.833 kb on + strand, within Psyr_4709 at 5580.833 kb on + strand, within Psyr_4709 at 5580.834 kb on - strand, within Psyr_4709 at 5580.834 kb on - strand, within Psyr_4709 at 5580.834 kb on - strand, within Psyr_4709 at 5580.834 kb on - strand, within Psyr_4709 at 5580.834 kb on - strand, within Psyr_4709 at 5580.834 kb on - strand, within Psyr_4709 at 5580.834 kb on - strand, within Psyr_4709 at 5580.834 kb on - strand, within Psyr_4709 at 5580.834 kb on - strand, within Psyr_4709 at 5580.876 kb on + strand, within Psyr_4709 at 5580.876 kb on + strand, within Psyr_4709 at 5580.876 kb on + strand, within Psyr_4709 at 5580.876 kb on + strand, within Psyr_4709 at 5580.876 kb on + strand, within Psyr_4709 at 5580.876 kb on + strand, within Psyr_4709 at 5580.876 kb on + strand, within Psyr_4709 at 5580.876 kb on + strand, within Psyr_4709 at 5580.876 kb on + strand, within Psyr_4709 at 5580.876 kb on + strand, within Psyr_4709 at 5580.877 kb on - strand, within Psyr_4709 at 5580.877 kb on - strand, within Psyr_4709 at 5580.877 kb on - strand, within Psyr_4709 at 5580.877 kb on - strand, within Psyr_4709 at 5581.002 kb on + strand at 5581.002 kb on + strand at 5581.002 kb on + strand at 5581.082 kb on + strand at 5581.166 kb on + strand at 5581.166 kb on + strand at 5581.166 kb on + strand at 5581.185 kb on + strand at 5581.186 kb on - strand at 5581.186 kb on - strand at 5581.230 kb on + strand at 5581.230 kb on + strand at 5581.230 kb on + strand at 5581.231 kb on - strand at 5581.411 kb on - strand, within Psyr_4710 at 5581.518 kb on + strand, within Psyr_4710 at 5581.518 kb on + strand, within Psyr_4710 at 5581.518 kb on + strand, within Psyr_4710 at 5581.573 kb on - strand, within Psyr_4710 at 5581.669 kb on - strand, within Psyr_4710 at 5581.669 kb on - strand, within Psyr_4710 at 5581.765 kb on - strand, within Psyr_4710 at 5581.930 kb on + strand at 5581.930 kb on + strand at 5581.931 kb on - strand at 5581.931 kb on - strand at 5581.981 kb on + strand at 5581.982 kb on - strand at 5581.999 kb on + strand at 5581.999 kb on + strand at 5582.000 kb on - strand at 5582.019 kb on + strand at 5582.209 kb on + strand, within Psyr_4711 at 5582.210 kb on - strand, within Psyr_4711 at 5582.738 kb on + strand, within Psyr_4711 at 5582.739 kb on - strand, within Psyr_4711 at 5582.780 kb on + strand, within Psyr_4711 at 5582.780 kb on + strand, within Psyr_4711 at 5582.780 kb on + strand, within Psyr_4711 at 5582.780 kb on + strand, within Psyr_4711 at 5582.781 kb on - strand, within Psyr_4711 at 5582.781 kb on - strand, within Psyr_4711 at 5582.781 kb on - strand, within Psyr_4711 at 5582.781 kb on - strand, within Psyr_4711 at 5582.781 kb on - strand, within Psyr_4711 at 5582.781 kb on - strand, within Psyr_4711 at 5582.803 kb on + strand, within Psyr_4711 at 5582.803 kb on + strand, within Psyr_4711 at 5582.803 kb on + strand, within Psyr_4711 at 5582.803 kb on + strand, within Psyr_4711 at 5582.803 kb on + strand, within Psyr_4711 at 5582.803 kb on + strand, within Psyr_4711 at 5582.803 kb on + strand, within Psyr_4711 at 5582.803 kb on + strand, within Psyr_4711 at 5582.804 kb on - strand, within Psyr_4711 at 5582.804 kb on - strand, within Psyr_4711 at 5582.804 kb on - strand, within Psyr_4711 at 5582.804 kb on - strand, within Psyr_4711 at 5582.804 kb on - strand, within Psyr_4711 at 5582.804 kb on - strand, within Psyr_4711 at 5582.804 kb on - strand, within Psyr_4711 at 5582.804 kb on - strand, within Psyr_4711 at 5582.804 kb on - strand, within Psyr_4711 at 5582.804 kb on - strand, within Psyr_4711 at 5582.845 kb on + strand, within Psyr_4711
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Rifampicin 0.1 mg/ml remove 5,580,178 + -0.6 5,580,190 - -0.0 5,580,220 + -1.6 5,580,220 + +0.1 5,580,220 + -0.6 5,580,257 - Psyr_4709 0.13 -0.2 5,580,266 - Psyr_4709 0.14 +0.8 5,580,266 - Psyr_4709 0.14 +0.4 5,580,302 + Psyr_4709 0.17 -2.6 5,580,302 + Psyr_4709 0.17 -0.2 5,580,302 + Psyr_4709 0.17 -0.1 5,580,303 - Psyr_4709 0.18 +0.5 5,580,342 - Psyr_4709 0.22 -0.7 5,580,342 - Psyr_4709 0.22 -1.1 5,580,342 - Psyr_4709 0.22 -2.4 5,580,476 + Psyr_4709 0.36 +0.9 5,580,476 + Psyr_4709 0.36 +0.2 5,580,477 - Psyr_4709 0.36 +0.5 5,580,477 - Psyr_4709 0.36 -0.0 5,580,477 - Psyr_4709 0.36 -2.1 5,580,477 - Psyr_4709 0.36 +0.1 5,580,477 - Psyr_4709 0.36 +1.5 5,580,503 + Psyr_4709 0.39 -0.6 5,580,503 + Psyr_4709 0.39 +0.6 5,580,569 + Psyr_4709 0.46 +0.4 5,580,569 + Psyr_4709 0.46 +0.5 5,580,569 + Psyr_4709 0.46 +1.3 5,580,569 + Psyr_4709 0.46 -0.0 5,580,596 - Psyr_4709 0.48 +0.2 5,580,779 + Psyr_4709 0.68 +0.2 5,580,780 - Psyr_4709 0.68 +0.6 5,580,815 + Psyr_4709 0.72 -0.8 5,580,833 + Psyr_4709 0.73 -1.2 5,580,833 + Psyr_4709 0.73 -0.2 5,580,833 + Psyr_4709 0.73 -0.2 5,580,833 + Psyr_4709 0.73 -0.1 5,580,833 + Psyr_4709 0.73 +0.7 5,580,833 + Psyr_4709 0.73 +1.1 5,580,833 + Psyr_4709 0.73 +0.6 5,580,834 - Psyr_4709 0.74 -0.4 5,580,834 - Psyr_4709 0.74 +0.8 5,580,834 - Psyr_4709 0.74 +0.2 5,580,834 - Psyr_4709 0.74 -0.2 5,580,834 - Psyr_4709 0.74 -1.4 5,580,834 - Psyr_4709 0.74 -0.6 5,580,834 - Psyr_4709 0.74 +0.4 5,580,834 - Psyr_4709 0.74 -0.3 5,580,834 - Psyr_4709 0.74 -1.4 5,580,876 + Psyr_4709 0.78 -0.2 5,580,876 + Psyr_4709 0.78 -0.9 5,580,876 + Psyr_4709 0.78 -0.5 5,580,876 + Psyr_4709 0.78 +0.3 5,580,876 + Psyr_4709 0.78 +0.2 5,580,876 + Psyr_4709 0.78 -0.5 5,580,876 + Psyr_4709 0.78 -0.2 5,580,876 + Psyr_4709 0.78 -0.1 5,580,876 + Psyr_4709 0.78 -2.4 5,580,876 + Psyr_4709 0.78 +0.0 5,580,877 - Psyr_4709 0.78 +1.6 5,580,877 - Psyr_4709 0.78 +0.6 5,580,877 - Psyr_4709 0.78 +1.1 5,580,877 - Psyr_4709 0.78 -0.4 5,581,002 + -0.3 5,581,002 + -0.5 5,581,002 + -0.5 5,581,082 + -0.7 5,581,166 + -0.9 5,581,166 + -0.6 5,581,166 + -0.4 5,581,185 + -1.0 5,581,186 - +0.3 5,581,186 - +1.2 5,581,230 + -0.4 5,581,230 + +0.0 5,581,230 + -0.5 5,581,231 - -1.7 5,581,411 - Psyr_4710 0.31 +0.4 5,581,518 + Psyr_4710 0.43 -1.2 5,581,518 + Psyr_4710 0.43 -0.3 5,581,518 + Psyr_4710 0.43 -0.6 5,581,573 - Psyr_4710 0.50 -0.9 5,581,669 - Psyr_4710 0.61 +0.3 5,581,669 - Psyr_4710 0.61 -0.7 5,581,765 - Psyr_4710 0.72 -2.0 5,581,930 + +0.4 5,581,930 + -1.0 5,581,931 - -1.5 5,581,931 - +0.1 5,581,981 + -0.3 5,581,982 - -0.7 5,581,999 + -2.0 5,581,999 + -0.4 5,582,000 - -1.3 5,582,019 + +0.5 5,582,209 + Psyr_4711 0.18 +0.2 5,582,210 - Psyr_4711 0.18 +0.3 5,582,738 + Psyr_4711 0.63 -0.5 5,582,739 - Psyr_4711 0.63 -0.6 5,582,780 + Psyr_4711 0.67 -1.3 5,582,780 + Psyr_4711 0.67 +0.3 5,582,780 + Psyr_4711 0.67 -0.4 5,582,780 + Psyr_4711 0.67 +1.2 5,582,781 - Psyr_4711 0.67 -2.3 5,582,781 - Psyr_4711 0.67 -2.9 5,582,781 - Psyr_4711 0.67 +1.1 5,582,781 - Psyr_4711 0.67 -0.9 5,582,781 - Psyr_4711 0.67 +0.7 5,582,781 - Psyr_4711 0.67 +0.0 5,582,803 + Psyr_4711 0.69 -0.7 5,582,803 + Psyr_4711 0.69 +0.5 5,582,803 + Psyr_4711 0.69 +0.4 5,582,803 + Psyr_4711 0.69 +0.1 5,582,803 + Psyr_4711 0.69 +0.0 5,582,803 + Psyr_4711 0.69 -0.4 5,582,803 + Psyr_4711 0.69 -0.5 5,582,803 + Psyr_4711 0.69 -0.1 5,582,804 - Psyr_4711 0.69 +1.7 5,582,804 - Psyr_4711 0.69 -1.1 5,582,804 - Psyr_4711 0.69 -0.4 5,582,804 - Psyr_4711 0.69 -0.3 5,582,804 - Psyr_4711 0.69 -0.3 5,582,804 - Psyr_4711 0.69 -0.1 5,582,804 - Psyr_4711 0.69 -2.4 5,582,804 - Psyr_4711 0.69 +1.4 5,582,804 - Psyr_4711 0.69 -0.4 5,582,804 - Psyr_4711 0.69 -2.2 5,582,845 + Psyr_4711 0.72 -0.7
Or see this region's nucleotide sequence