Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4622

Experiment: KB with Rifampicin 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4620 and Psyr_4621 are separated by 21 nucleotidesPsyr_4621 and Psyr_4622 are separated by 0 nucleotidesPsyr_4622 and Psyr_4623 are separated by 48 nucleotides Psyr_4620: Psyr_4620 - conserved hypothetical protein, at 5,478,853 to 5,479,857 _4620 Psyr_4621: Psyr_4621 - Heat shock protein DnaJ, N-terminal, at 5,479,879 to 5,480,646 _4621 Psyr_4622: Psyr_4622 - Nucleotidyl transferase, at 5,480,647 to 5,481,369 _4622 Psyr_4623: Psyr_4623 - Aminoglycoside phosphotransferase, at 5,481,418 to 5,482,440 _4623 Position (kb) 5480 5481 5482Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 5479.664 kb on + strand, within Psyr_4620at 5479.665 kb on - strand, within Psyr_4620at 5479.665 kb on - strand, within Psyr_4620at 5479.665 kb on - strand, within Psyr_4620at 5479.685 kb on - strand, within Psyr_4620at 5479.685 kb on - strand, within Psyr_4620at 5479.731 kb on + strand, within Psyr_4620at 5479.811 kb on + strandat 5479.812 kb on - strandat 5479.812 kb on - strandat 5479.812 kb on - strandat 5479.812 kb on - strandat 5479.836 kb on - strandat 5479.836 kb on - strandat 5479.836 kb on - strandat 5479.855 kb on + strandat 5479.856 kb on - strandat 5480.087 kb on + strand, within Psyr_4621at 5480.088 kb on - strand, within Psyr_4621at 5480.088 kb on - strand, within Psyr_4621at 5480.259 kb on + strand, within Psyr_4621at 5480.259 kb on + strand, within Psyr_4621at 5480.259 kb on + strand, within Psyr_4621at 5480.259 kb on + strand, within Psyr_4621at 5480.259 kb on + strand, within Psyr_4621at 5480.259 kb on + strand, within Psyr_4621at 5480.259 kb on + strand, within Psyr_4621at 5480.259 kb on + strand, within Psyr_4621at 5480.259 kb on + strand, within Psyr_4621at 5480.260 kb on - strand, within Psyr_4621at 5480.260 kb on - strand, within Psyr_4621at 5480.260 kb on - strand, within Psyr_4621at 5480.260 kb on - strand, within Psyr_4621at 5480.260 kb on - strand, within Psyr_4621at 5480.260 kb on - strand, within Psyr_4621at 5480.260 kb on - strand, within Psyr_4621at 5480.260 kb on - strand, within Psyr_4621at 5480.260 kb on - strand, within Psyr_4621at 5480.260 kb on - strand, within Psyr_4621at 5480.300 kb on + strand, within Psyr_4621at 5480.301 kb on - strand, within Psyr_4621at 5480.301 kb on - strand, within Psyr_4621at 5480.412 kb on + strand, within Psyr_4621at 5480.723 kb on + strand, within Psyr_4622at 5480.724 kb on - strand, within Psyr_4622at 5480.840 kb on + strand, within Psyr_4622at 5480.840 kb on + strand, within Psyr_4622at 5480.841 kb on - strand, within Psyr_4622at 5480.841 kb on - strand, within Psyr_4622at 5480.936 kb on - strand, within Psyr_4622at 5481.052 kb on + strand, within Psyr_4622at 5481.052 kb on + strand, within Psyr_4622at 5481.053 kb on - strand, within Psyr_4622at 5481.053 kb on - strand, within Psyr_4622at 5481.131 kb on + strand, within Psyr_4622at 5481.132 kb on - strand, within Psyr_4622at 5481.132 kb on - strand, within Psyr_4622at 5481.226 kb on + strand, within Psyr_4622at 5481.226 kb on + strand, within Psyr_4622at 5481.227 kb on - strand, within Psyr_4622at 5481.227 kb on - strand, within Psyr_4622at 5481.227 kb on - strand, within Psyr_4622at 5481.380 kb on + strandat 5481.381 kb on - strandat 5481.502 kb on + strandat 5481.502 kb on + strandat 5481.502 kb on + strandat 5481.503 kb on - strandat 5481.503 kb on - strandat 5481.503 kb on - strandat 5481.503 kb on - strandat 5481.503 kb on - strandat 5481.503 kb on - strandat 5481.504 kb on + strandat 5481.504 kb on + strandat 5481.504 kb on + strandat 5481.504 kb on + strandat 5481.504 kb on + strandat 5481.504 kb on + strandat 5481.504 kb on + strandat 5481.505 kb on - strandat 5481.505 kb on - strandat 5481.505 kb on - strandat 5481.505 kb on - strandat 5481.505 kb on - strandat 5481.505 kb on - strandat 5481.505 kb on - strandat 5481.505 kb on - strandat 5481.505 kb on - strandat 5481.505 kb on - strandat 5481.505 kb on - strandat 5481.506 kb on + strandat 5481.506 kb on + strandat 5481.507 kb on - strandat 5481.507 kb on - strandat 5481.507 kb on - strandat 5481.507 kb on - strandat 5481.507 kb on - strandat 5481.684 kb on - strand, within Psyr_4623at 5481.758 kb on + strand, within Psyr_4623at 5481.758 kb on + strand, within Psyr_4623at 5481.758 kb on + strand, within Psyr_4623at 5481.758 kb on + strand, within Psyr_4623at 5481.758 kb on + strand, within Psyr_4623at 5481.758 kb on + strand, within Psyr_4623at 5481.759 kb on - strand, within Psyr_4623at 5481.759 kb on - strand, within Psyr_4623at 5481.759 kb on - strand, within Psyr_4623at 5481.759 kb on - strand, within Psyr_4623at 5481.759 kb on - strand, within Psyr_4623at 5481.759 kb on - strand, within Psyr_4623at 5481.837 kb on + strand, within Psyr_4623at 5481.837 kb on + strand, within Psyr_4623at 5481.837 kb on + strand, within Psyr_4623at 5481.838 kb on - strand, within Psyr_4623at 5481.838 kb on - strand, within Psyr_4623at 5481.838 kb on - strand, within Psyr_4623at 5481.838 kb on - strand, within Psyr_4623at 5481.839 kb on + strand, within Psyr_4623at 5481.839 kb on + strand, within Psyr_4623at 5481.839 kb on + strand, within Psyr_4623at 5481.839 kb on + strand, within Psyr_4623at 5481.839 kb on + strand, within Psyr_4623at 5481.839 kb on + strand, within Psyr_4623at 5481.840 kb on - strand, within Psyr_4623at 5481.840 kb on - strand, within Psyr_4623at 5481.840 kb on - strand, within Psyr_4623at 5481.840 kb on - strand, within Psyr_4623at 5481.840 kb on - strand, within Psyr_4623at 5481.840 kb on - strand, within Psyr_4623at 5481.840 kb on - strand, within Psyr_4623at 5481.840 kb on - strand, within Psyr_4623at 5481.840 kb on - strand, within Psyr_4623at 5481.840 kb on - strand, within Psyr_4623at 5481.840 kb on - strand, within Psyr_4623at 5481.840 kb on - strand, within Psyr_4623at 5481.840 kb on - strand, within Psyr_4623at 5481.840 kb on - strand, within Psyr_4623at 5481.840 kb on - strand, within Psyr_4623at 5481.955 kb on + strand, within Psyr_4623at 5481.956 kb on - strand, within Psyr_4623at 5481.956 kb on - strand, within Psyr_4623at 5481.959 kb on + strand, within Psyr_4623at 5481.959 kb on + strand, within Psyr_4623at 5481.960 kb on - strand, within Psyr_4623at 5481.960 kb on - strand, within Psyr_4623at 5481.960 kb on - strand, within Psyr_4623at 5482.007 kb on + strand, within Psyr_4623at 5482.007 kb on + strand, within Psyr_4623at 5482.007 kb on + strand, within Psyr_4623at 5482.008 kb on - strand, within Psyr_4623at 5482.008 kb on - strand, within Psyr_4623at 5482.008 kb on - strand, within Psyr_4623at 5482.008 kb on - strand, within Psyr_4623at 5482.008 kb on - strand, within Psyr_4623at 5482.008 kb on - strand, within Psyr_4623at 5482.043 kb on + strand, within Psyr_4623at 5482.112 kb on + strand, within Psyr_4623at 5482.112 kb on + strand, within Psyr_4623at 5482.112 kb on + strand, within Psyr_4623at 5482.112 kb on + strand, within Psyr_4623at 5482.112 kb on + strand, within Psyr_4623at 5482.113 kb on - strand, within Psyr_4623at 5482.185 kb on + strand, within Psyr_4623at 5482.185 kb on + strand, within Psyr_4623at 5482.186 kb on - strand, within Psyr_4623at 5482.204 kb on + strand, within Psyr_4623at 5482.266 kb on + strand, within Psyr_4623at 5482.267 kb on - strand, within Psyr_4623at 5482.267 kb on - strand, within Psyr_4623at 5482.267 kb on - strand, within Psyr_4623at 5482.338 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Rifampicin 0.1 mg/ml
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5,479,664 + Psyr_4620 0.81 -0.2
5,479,665 - Psyr_4620 0.81 +2.4
5,479,665 - Psyr_4620 0.81 +0.2
5,479,665 - Psyr_4620 0.81 -0.8
5,479,685 - Psyr_4620 0.83 +2.0
5,479,685 - Psyr_4620 0.83 +1.0
5,479,731 + Psyr_4620 0.87 +0.1
5,479,811 + -0.1
5,479,812 - -0.8
5,479,812 - -1.0
5,479,812 - +0.8
5,479,812 - -0.3
5,479,836 - +0.8
5,479,836 - +0.6
5,479,836 - +1.0
5,479,855 + -0.7
5,479,856 - +1.2
5,480,087 + Psyr_4621 0.27 -1.2
5,480,088 - Psyr_4621 0.27 -0.3
5,480,088 - Psyr_4621 0.27 +0.9
5,480,259 + Psyr_4621 0.49 +0.4
5,480,259 + Psyr_4621 0.49 -0.4
5,480,259 + Psyr_4621 0.49 +0.5
5,480,259 + Psyr_4621 0.49 -2.0
5,480,259 + Psyr_4621 0.49 -0.8
5,480,259 + Psyr_4621 0.49 +1.5
5,480,259 + Psyr_4621 0.49 -0.1
5,480,259 + Psyr_4621 0.49 +3.1
5,480,259 + Psyr_4621 0.49 -0.7
5,480,260 - Psyr_4621 0.50 +0.4
5,480,260 - Psyr_4621 0.50 +0.2
5,480,260 - Psyr_4621 0.50 +0.1
5,480,260 - Psyr_4621 0.50 +0.2
5,480,260 - Psyr_4621 0.50 +0.2
5,480,260 - Psyr_4621 0.50 -0.8
5,480,260 - Psyr_4621 0.50 -3.2
5,480,260 - Psyr_4621 0.50 -0.7
5,480,260 - Psyr_4621 0.50 +0.4
5,480,260 - Psyr_4621 0.50 -1.2
5,480,300 + Psyr_4621 0.55 -1.3
5,480,301 - Psyr_4621 0.55 +0.1
5,480,301 - Psyr_4621 0.55 +2.8
5,480,412 + Psyr_4621 0.69 +0.8
5,480,723 + Psyr_4622 0.11 -1.5
5,480,724 - Psyr_4622 0.11 +1.4
5,480,840 + Psyr_4622 0.27 -0.8
5,480,840 + Psyr_4622 0.27 -2.1
5,480,841 - Psyr_4622 0.27 -1.0
5,480,841 - Psyr_4622 0.27 -0.4
5,480,936 - Psyr_4622 0.40 -2.5
5,481,052 + Psyr_4622 0.56 -1.2
5,481,052 + Psyr_4622 0.56 -1.0
5,481,053 - Psyr_4622 0.56 -0.2
5,481,053 - Psyr_4622 0.56 -2.0
5,481,131 + Psyr_4622 0.67 -1.8
5,481,132 - Psyr_4622 0.67 -1.2
5,481,132 - Psyr_4622 0.67 +0.5
5,481,226 + Psyr_4622 0.80 -1.2
5,481,226 + Psyr_4622 0.80 -1.2
5,481,227 - Psyr_4622 0.80 +2.1
5,481,227 - Psyr_4622 0.80 +0.3
5,481,227 - Psyr_4622 0.80 -1.4
5,481,380 + +0.5
5,481,381 - -0.3
5,481,502 + +1.3
5,481,502 + +1.4
5,481,502 + -0.7
5,481,503 - -1.1
5,481,503 - -0.1
5,481,503 - +1.2
5,481,503 - -1.9
5,481,503 - -0.8
5,481,503 - -0.2
5,481,504 + -1.6
5,481,504 + -0.5
5,481,504 + +0.0
5,481,504 + -0.8
5,481,504 + -0.3
5,481,504 + +1.8
5,481,504 + +1.6
5,481,505 - -0.3
5,481,505 - -1.3
5,481,505 - -1.2
5,481,505 - +1.8
5,481,505 - -1.0
5,481,505 - +0.3
5,481,505 - +1.6
5,481,505 - +0.1
5,481,505 - +1.4
5,481,505 - +0.3
5,481,505 - -0.2
5,481,506 + -0.5
5,481,506 + -0.3
5,481,507 - -1.3
5,481,507 - +0.8
5,481,507 - -0.7
5,481,507 - -1.2
5,481,507 - -0.2
5,481,684 - Psyr_4623 0.26 -0.2
5,481,758 + Psyr_4623 0.33 +2.1
5,481,758 + Psyr_4623 0.33 +0.5
5,481,758 + Psyr_4623 0.33 -0.6
5,481,758 + Psyr_4623 0.33 -0.2
5,481,758 + Psyr_4623 0.33 -0.6
5,481,758 + Psyr_4623 0.33 -1.1
5,481,759 - Psyr_4623 0.33 +0.3
5,481,759 - Psyr_4623 0.33 -0.3
5,481,759 - Psyr_4623 0.33 +0.6
5,481,759 - Psyr_4623 0.33 -0.7
5,481,759 - Psyr_4623 0.33 -1.0
5,481,759 - Psyr_4623 0.33 -1.0
5,481,837 + Psyr_4623 0.41 -0.3
5,481,837 + Psyr_4623 0.41 +0.5
5,481,837 + Psyr_4623 0.41 -1.1
5,481,838 - Psyr_4623 0.41 -0.2
5,481,838 - Psyr_4623 0.41 -0.6
5,481,838 - Psyr_4623 0.41 +3.9
5,481,838 - Psyr_4623 0.41 -1.1
5,481,839 + Psyr_4623 0.41 +1.0
5,481,839 + Psyr_4623 0.41 -0.8
5,481,839 + Psyr_4623 0.41 +0.8
5,481,839 + Psyr_4623 0.41 +0.2
5,481,839 + Psyr_4623 0.41 -1.2
5,481,839 + Psyr_4623 0.41 +0.2
5,481,840 - Psyr_4623 0.41 -1.0
5,481,840 - Psyr_4623 0.41 +0.8
5,481,840 - Psyr_4623 0.41 -2.7
5,481,840 - Psyr_4623 0.41 -1.9
5,481,840 - Psyr_4623 0.41 -0.5
5,481,840 - Psyr_4623 0.41 -1.4
5,481,840 - Psyr_4623 0.41 +1.8
5,481,840 - Psyr_4623 0.41 +0.8
5,481,840 - Psyr_4623 0.41 +0.5
5,481,840 - Psyr_4623 0.41 -0.8
5,481,840 - Psyr_4623 0.41 -0.5
5,481,840 - Psyr_4623 0.41 -1.2
5,481,840 - Psyr_4623 0.41 -0.8
5,481,840 - Psyr_4623 0.41 -1.2
5,481,840 - Psyr_4623 0.41 -1.0
5,481,955 + Psyr_4623 0.52 -0.5
5,481,956 - Psyr_4623 0.53 -2.0
5,481,956 - Psyr_4623 0.53 -0.6
5,481,959 + Psyr_4623 0.53 -0.5
5,481,959 + Psyr_4623 0.53 -1.2
5,481,960 - Psyr_4623 0.53 -1.1
5,481,960 - Psyr_4623 0.53 -0.4
5,481,960 - Psyr_4623 0.53 -0.9
5,482,007 + Psyr_4623 0.58 -0.3
5,482,007 + Psyr_4623 0.58 +0.6
5,482,007 + Psyr_4623 0.58 +0.8
5,482,008 - Psyr_4623 0.58 -1.0
5,482,008 - Psyr_4623 0.58 +0.5
5,482,008 - Psyr_4623 0.58 +1.5
5,482,008 - Psyr_4623 0.58 +0.0
5,482,008 - Psyr_4623 0.58 -0.3
5,482,008 - Psyr_4623 0.58 -0.8
5,482,043 + Psyr_4623 0.61 -0.1
5,482,112 + Psyr_4623 0.68 -0.5
5,482,112 + Psyr_4623 0.68 -1.6
5,482,112 + Psyr_4623 0.68 -1.5
5,482,112 + Psyr_4623 0.68 +0.4
5,482,112 + Psyr_4623 0.68 +0.8
5,482,113 - Psyr_4623 0.68 -0.5
5,482,185 + Psyr_4623 0.75 +0.1
5,482,185 + Psyr_4623 0.75 +0.4
5,482,186 - Psyr_4623 0.75 -1.2
5,482,204 + Psyr_4623 0.77 -2.0
5,482,266 + Psyr_4623 0.83 +0.5
5,482,267 - Psyr_4623 0.83 +0.5
5,482,267 - Psyr_4623 0.83 -1.5
5,482,267 - Psyr_4623 0.83 +1.4
5,482,338 + +1.1

Or see this region's nucleotide sequence