Experiment: KB with Rifampicin 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4619 and Psyr_4620 are separated by 114 nucleotides Psyr_4620 and Psyr_4621 are separated by 21 nucleotides Psyr_4621 and Psyr_4622 are separated by 0 nucleotides
Psyr_4619: Psyr_4619 - multi-sensor signal transduction histidine kinase, at 5,476,726 to 5,478,738
_4619
Psyr_4620: Psyr_4620 - conserved hypothetical protein, at 5,478,853 to 5,479,857
_4620
Psyr_4621: Psyr_4621 - Heat shock protein DnaJ, N-terminal, at 5,479,879 to 5,480,646
_4621
Psyr_4622: Psyr_4622 - Nucleotidyl transferase, at 5,480,647 to 5,481,369
_4622
Position (kb) 5478
5479
5480 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5478.241 kb on - strand, within Psyr_4619 at 5478.344 kb on + strand, within Psyr_4619 at 5478.345 kb on - strand, within Psyr_4619 at 5478.670 kb on - strand at 5478.711 kb on + strand at 5478.742 kb on + strand at 5478.742 kb on + strand at 5478.742 kb on + strand at 5478.742 kb on + strand at 5478.743 kb on - strand at 5478.743 kb on - strand at 5478.743 kb on - strand at 5478.743 kb on - strand at 5478.743 kb on - strand at 5478.743 kb on - strand at 5478.743 kb on - strand at 5478.818 kb on - strand at 5478.848 kb on - strand at 5478.859 kb on + strand at 5478.860 kb on - strand at 5478.902 kb on + strand at 5479.022 kb on + strand, within Psyr_4620 at 5479.023 kb on - strand, within Psyr_4620 at 5479.257 kb on + strand, within Psyr_4620 at 5479.617 kb on + strand, within Psyr_4620 at 5479.618 kb on - strand, within Psyr_4620 at 5479.664 kb on + strand, within Psyr_4620 at 5479.665 kb on - strand, within Psyr_4620 at 5479.665 kb on - strand, within Psyr_4620 at 5479.665 kb on - strand, within Psyr_4620 at 5479.685 kb on - strand, within Psyr_4620 at 5479.685 kb on - strand, within Psyr_4620 at 5479.731 kb on + strand, within Psyr_4620 at 5479.811 kb on + strand at 5479.812 kb on - strand at 5479.812 kb on - strand at 5479.812 kb on - strand at 5479.812 kb on - strand at 5479.836 kb on - strand at 5479.836 kb on - strand at 5479.836 kb on - strand at 5479.855 kb on + strand at 5479.856 kb on - strand at 5480.087 kb on + strand, within Psyr_4621 at 5480.088 kb on - strand, within Psyr_4621 at 5480.088 kb on - strand, within Psyr_4621 at 5480.259 kb on + strand, within Psyr_4621 at 5480.259 kb on + strand, within Psyr_4621 at 5480.259 kb on + strand, within Psyr_4621 at 5480.259 kb on + strand, within Psyr_4621 at 5480.259 kb on + strand, within Psyr_4621 at 5480.259 kb on + strand, within Psyr_4621 at 5480.259 kb on + strand, within Psyr_4621 at 5480.259 kb on + strand, within Psyr_4621 at 5480.259 kb on + strand, within Psyr_4621 at 5480.260 kb on - strand, within Psyr_4621 at 5480.260 kb on - strand, within Psyr_4621 at 5480.260 kb on - strand, within Psyr_4621 at 5480.260 kb on - strand, within Psyr_4621 at 5480.260 kb on - strand, within Psyr_4621 at 5480.260 kb on - strand, within Psyr_4621 at 5480.260 kb on - strand, within Psyr_4621 at 5480.260 kb on - strand, within Psyr_4621 at 5480.260 kb on - strand, within Psyr_4621 at 5480.260 kb on - strand, within Psyr_4621 at 5480.300 kb on + strand, within Psyr_4621 at 5480.301 kb on - strand, within Psyr_4621 at 5480.301 kb on - strand, within Psyr_4621 at 5480.412 kb on + strand, within Psyr_4621 at 5480.723 kb on + strand, within Psyr_4622 at 5480.724 kb on - strand, within Psyr_4622 at 5480.840 kb on + strand, within Psyr_4622 at 5480.840 kb on + strand, within Psyr_4622 at 5480.841 kb on - strand, within Psyr_4622 at 5480.841 kb on - strand, within Psyr_4622
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Rifampicin 0.1 mg/ml remove 5,478,241 - Psyr_4619 0.75 -0.4 5,478,344 + Psyr_4619 0.80 -0.7 5,478,345 - Psyr_4619 0.80 +1.4 5,478,670 - -0.4 5,478,711 + -0.7 5,478,742 + +0.7 5,478,742 + +0.4 5,478,742 + +0.5 5,478,742 + +0.1 5,478,743 - +0.1 5,478,743 - -0.6 5,478,743 - +0.4 5,478,743 - +0.5 5,478,743 - +1.3 5,478,743 - -0.1 5,478,743 - +1.1 5,478,818 - -1.0 5,478,848 - -0.3 5,478,859 + -0.4 5,478,860 - +0.9 5,478,902 + -0.6 5,479,022 + Psyr_4620 0.17 +1.6 5,479,023 - Psyr_4620 0.17 +0.4 5,479,257 + Psyr_4620 0.40 +0.8 5,479,617 + Psyr_4620 0.76 +2.0 5,479,618 - Psyr_4620 0.76 -0.4 5,479,664 + Psyr_4620 0.81 -0.2 5,479,665 - Psyr_4620 0.81 +2.4 5,479,665 - Psyr_4620 0.81 +0.2 5,479,665 - Psyr_4620 0.81 -0.8 5,479,685 - Psyr_4620 0.83 +2.0 5,479,685 - Psyr_4620 0.83 +1.0 5,479,731 + Psyr_4620 0.87 +0.1 5,479,811 + -0.1 5,479,812 - -0.8 5,479,812 - -1.0 5,479,812 - +0.8 5,479,812 - -0.3 5,479,836 - +0.8 5,479,836 - +0.6 5,479,836 - +1.0 5,479,855 + -0.7 5,479,856 - +1.2 5,480,087 + Psyr_4621 0.27 -1.2 5,480,088 - Psyr_4621 0.27 -0.3 5,480,088 - Psyr_4621 0.27 +0.9 5,480,259 + Psyr_4621 0.49 +0.4 5,480,259 + Psyr_4621 0.49 -0.4 5,480,259 + Psyr_4621 0.49 +0.5 5,480,259 + Psyr_4621 0.49 -2.0 5,480,259 + Psyr_4621 0.49 -0.8 5,480,259 + Psyr_4621 0.49 +1.5 5,480,259 + Psyr_4621 0.49 -0.1 5,480,259 + Psyr_4621 0.49 +3.1 5,480,259 + Psyr_4621 0.49 -0.7 5,480,260 - Psyr_4621 0.50 +0.4 5,480,260 - Psyr_4621 0.50 +0.2 5,480,260 - Psyr_4621 0.50 +0.1 5,480,260 - Psyr_4621 0.50 +0.2 5,480,260 - Psyr_4621 0.50 +0.2 5,480,260 - Psyr_4621 0.50 -0.8 5,480,260 - Psyr_4621 0.50 -3.2 5,480,260 - Psyr_4621 0.50 -0.7 5,480,260 - Psyr_4621 0.50 +0.4 5,480,260 - Psyr_4621 0.50 -1.2 5,480,300 + Psyr_4621 0.55 -1.3 5,480,301 - Psyr_4621 0.55 +0.1 5,480,301 - Psyr_4621 0.55 +2.8 5,480,412 + Psyr_4621 0.69 +0.8 5,480,723 + Psyr_4622 0.11 -1.5 5,480,724 - Psyr_4622 0.11 +1.4 5,480,840 + Psyr_4622 0.27 -0.8 5,480,840 + Psyr_4622 0.27 -2.1 5,480,841 - Psyr_4622 0.27 -1.0 5,480,841 - Psyr_4622 0.27 -0.4
Or see this region's nucleotide sequence