Experiment: KB with Rifampicin 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4496 and Psyr_4497 are separated by 83 nucleotides Psyr_4497 and Psyr_4498 overlap by 1 nucleotides Psyr_4498 and Psyr_4499 are separated by 113 nucleotides
Psyr_4496: Psyr_4496 - outer membrane transport energization protein TonB, at 5,359,307 to 5,360,020
_4496
Psyr_4497: Psyr_4497 - outer membrane transport energization protein ExbB, at 5,360,104 to 5,360,832
_4497
Psyr_4498: Psyr_4498 - outer membrane transport energization protein ExbD, at 5,360,832 to 5,361,257
_4498
Psyr_4499: Psyr_4499 - TonB-dependent siderophore receptor, at 5,361,371 to 5,363,491
_4499
Position (kb) 5360
5361
5362 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5359.881 kb on + strand, within Psyr_4496 at 5359.881 kb on + strand, within Psyr_4496 at 5359.882 kb on - strand, within Psyr_4496 at 5359.882 kb on - strand, within Psyr_4496 at 5359.882 kb on - strand, within Psyr_4496 at 5359.882 kb on - strand, within Psyr_4496 at 5359.982 kb on + strand at 5359.982 kb on + strand at 5359.982 kb on + strand at 5359.983 kb on - strand at 5360.018 kb on + strand at 5360.018 kb on + strand at 5360.019 kb on - strand at 5360.019 kb on - strand at 5360.019 kb on - strand at 5360.019 kb on - strand at 5360.035 kb on + strand at 5360.099 kb on + strand at 5360.099 kb on + strand at 5360.099 kb on + strand at 5360.099 kb on + strand at 5360.099 kb on + strand at 5360.099 kb on + strand at 5360.099 kb on + strand at 5360.099 kb on + strand at 5360.099 kb on + strand at 5360.099 kb on + strand at 5360.099 kb on + strand at 5360.099 kb on + strand at 5360.100 kb on - strand at 5360.100 kb on - strand at 5360.100 kb on - strand at 5360.100 kb on - strand at 5360.100 kb on - strand at 5360.100 kb on - strand at 5360.100 kb on - strand at 5360.103 kb on + strand at 5360.103 kb on + strand at 5360.103 kb on + strand at 5360.103 kb on + strand at 5360.103 kb on + strand at 5360.103 kb on + strand at 5360.103 kb on + strand at 5360.103 kb on + strand at 5360.103 kb on + strand at 5360.103 kb on + strand at 5360.103 kb on + strand at 5360.103 kb on + strand at 5360.104 kb on - strand at 5360.104 kb on - strand at 5360.104 kb on - strand at 5360.104 kb on - strand at 5360.104 kb on - strand at 5360.104 kb on - strand at 5360.104 kb on - strand at 5360.104 kb on - strand at 5360.104 kb on - strand at 5360.104 kb on - strand at 5360.104 kb on - strand at 5360.207 kb on - strand, within Psyr_4497 at 5360.207 kb on - strand, within Psyr_4497 at 5360.325 kb on + strand, within Psyr_4497 at 5360.325 kb on + strand, within Psyr_4497 at 5360.325 kb on + strand, within Psyr_4497 at 5360.325 kb on + strand, within Psyr_4497 at 5360.326 kb on - strand, within Psyr_4497 at 5360.333 kb on - strand, within Psyr_4497 at 5360.471 kb on + strand, within Psyr_4497 at 5360.471 kb on + strand, within Psyr_4497 at 5360.471 kb on + strand, within Psyr_4497 at 5360.472 kb on - strand, within Psyr_4497 at 5360.472 kb on - strand, within Psyr_4497 at 5360.472 kb on - strand, within Psyr_4497 at 5360.551 kb on + strand, within Psyr_4497 at 5360.551 kb on + strand, within Psyr_4497 at 5360.551 kb on + strand, within Psyr_4497 at 5360.551 kb on + strand, within Psyr_4497 at 5360.551 kb on + strand, within Psyr_4497 at 5360.552 kb on - strand, within Psyr_4497 at 5360.552 kb on - strand, within Psyr_4497 at 5360.552 kb on - strand, within Psyr_4497 at 5360.677 kb on + strand, within Psyr_4497 at 5360.678 kb on - strand, within Psyr_4497 at 5360.697 kb on + strand, within Psyr_4497 at 5360.894 kb on + strand, within Psyr_4498 at 5361.171 kb on + strand, within Psyr_4498 at 5361.256 kb on - strand at 5361.392 kb on + strand at 5361.392 kb on + strand at 5361.392 kb on + strand at 5361.392 kb on + strand at 5361.392 kb on + strand at 5361.392 kb on + strand at 5361.392 kb on + strand at 5361.392 kb on + strand at 5361.392 kb on + strand at 5361.392 kb on + strand at 5361.392 kb on + strand at 5361.392 kb on + strand at 5361.392 kb on + strand at 5361.392 kb on + strand at 5361.392 kb on + strand at 5361.392 kb on + strand at 5361.393 kb on - strand at 5361.393 kb on - strand at 5361.393 kb on - strand at 5361.393 kb on - strand at 5361.393 kb on - strand at 5361.393 kb on - strand at 5361.393 kb on - strand at 5361.393 kb on - strand at 5361.393 kb on - strand at 5361.393 kb on - strand at 5361.393 kb on - strand at 5361.393 kb on - strand at 5361.393 kb on - strand at 5361.393 kb on - strand at 5361.393 kb on - strand at 5361.393 kb on - strand at 5361.393 kb on - strand at 5361.456 kb on + strand at 5361.456 kb on + strand at 5361.456 kb on + strand at 5361.456 kb on + strand at 5361.457 kb on - strand at 5361.457 kb on - strand at 5361.457 kb on - strand at 5361.457 kb on - strand at 5361.457 kb on - strand at 5361.457 kb on - strand at 5361.478 kb on + strand at 5361.478 kb on + strand at 5361.478 kb on + strand at 5361.478 kb on + strand at 5361.478 kb on + strand at 5361.478 kb on + strand at 5361.478 kb on + strand at 5361.478 kb on + strand at 5361.478 kb on + strand at 5361.478 kb on + strand at 5361.478 kb on + strand at 5361.478 kb on + strand at 5361.478 kb on + strand at 5361.478 kb on + strand at 5361.479 kb on - strand at 5361.479 kb on - strand at 5361.479 kb on - strand at 5361.479 kb on - strand at 5361.479 kb on - strand at 5361.479 kb on - strand at 5361.479 kb on - strand at 5361.479 kb on - strand at 5361.479 kb on - strand at 5361.479 kb on - strand at 5361.479 kb on - strand at 5361.479 kb on - strand at 5361.507 kb on + strand at 5361.606 kb on + strand, within Psyr_4499 at 5361.607 kb on - strand, within Psyr_4499 at 5361.662 kb on + strand, within Psyr_4499 at 5361.662 kb on + strand, within Psyr_4499 at 5361.662 kb on + strand, within Psyr_4499 at 5361.662 kb on + strand, within Psyr_4499 at 5361.662 kb on + strand, within Psyr_4499 at 5361.662 kb on + strand, within Psyr_4499 at 5361.662 kb on + strand, within Psyr_4499 at 5361.662 kb on + strand, within Psyr_4499 at 5361.662 kb on + strand, within Psyr_4499 at 5361.662 kb on + strand, within Psyr_4499 at 5361.662 kb on + strand, within Psyr_4499 at 5361.662 kb on + strand, within Psyr_4499 at 5361.663 kb on - strand, within Psyr_4499 at 5361.663 kb on - strand, within Psyr_4499 at 5361.663 kb on - strand, within Psyr_4499 at 5361.663 kb on - strand, within Psyr_4499 at 5361.663 kb on - strand, within Psyr_4499 at 5361.663 kb on - strand, within Psyr_4499 at 5361.663 kb on - strand, within Psyr_4499 at 5361.663 kb on - strand, within Psyr_4499 at 5361.663 kb on - strand, within Psyr_4499 at 5361.663 kb on - strand, within Psyr_4499 at 5361.663 kb on - strand, within Psyr_4499 at 5361.663 kb on - strand, within Psyr_4499 at 5361.663 kb on - strand, within Psyr_4499 at 5361.695 kb on + strand, within Psyr_4499 at 5361.696 kb on - strand, within Psyr_4499 at 5361.696 kb on - strand, within Psyr_4499 at 5361.832 kb on + strand, within Psyr_4499 at 5361.854 kb on + strand, within Psyr_4499 at 5361.854 kb on + strand, within Psyr_4499 at 5361.854 kb on + strand, within Psyr_4499 at 5361.854 kb on + strand, within Psyr_4499 at 5361.854 kb on + strand, within Psyr_4499 at 5361.854 kb on + strand, within Psyr_4499 at 5361.854 kb on + strand, within Psyr_4499 at 5361.854 kb on + strand, within Psyr_4499 at 5361.855 kb on - strand, within Psyr_4499 at 5361.855 kb on - strand, within Psyr_4499 at 5361.855 kb on - strand, within Psyr_4499 at 5361.855 kb on - strand, within Psyr_4499 at 5361.855 kb on - strand, within Psyr_4499 at 5361.855 kb on - strand, within Psyr_4499 at 5361.855 kb on - strand, within Psyr_4499 at 5361.855 kb on - strand, within Psyr_4499 at 5361.855 kb on - strand, within Psyr_4499 at 5361.887 kb on + strand, within Psyr_4499 at 5361.887 kb on + strand, within Psyr_4499 at 5361.887 kb on + strand, within Psyr_4499 at 5361.887 kb on + strand, within Psyr_4499 at 5361.887 kb on + strand, within Psyr_4499 at 5361.888 kb on - strand, within Psyr_4499 at 5361.888 kb on - strand, within Psyr_4499 at 5361.888 kb on - strand, within Psyr_4499 at 5361.888 kb on - strand, within Psyr_4499 at 5361.888 kb on - strand, within Psyr_4499 at 5361.892 kb on - strand, within Psyr_4499 at 5361.956 kb on + strand, within Psyr_4499 at 5361.956 kb on + strand, within Psyr_4499 at 5361.956 kb on + strand, within Psyr_4499 at 5361.956 kb on + strand, within Psyr_4499 at 5361.956 kb on + strand, within Psyr_4499 at 5361.956 kb on + strand, within Psyr_4499 at 5361.956 kb on + strand, within Psyr_4499 at 5361.957 kb on - strand, within Psyr_4499 at 5361.957 kb on - strand, within Psyr_4499 at 5361.957 kb on - strand, within Psyr_4499 at 5361.957 kb on - strand, within Psyr_4499 at 5361.957 kb on - strand, within Psyr_4499 at 5361.957 kb on - strand, within Psyr_4499 at 5361.957 kb on - strand, within Psyr_4499 at 5361.957 kb on - strand, within Psyr_4499 at 5361.957 kb on - strand, within Psyr_4499 at 5361.957 kb on - strand, within Psyr_4499 at 5361.957 kb on - strand, within Psyr_4499 at 5361.958 kb on + strand, within Psyr_4499 at 5361.959 kb on - strand, within Psyr_4499 at 5362.136 kb on + strand, within Psyr_4499 at 5362.227 kb on - strand, within Psyr_4499 at 5362.227 kb on - strand, within Psyr_4499 at 5362.241 kb on + strand, within Psyr_4499 at 5362.241 kb on + strand, within Psyr_4499 at 5362.242 kb on - strand, within Psyr_4499 at 5362.256 kb on + strand, within Psyr_4499
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Rifampicin 0.1 mg/ml remove 5,359,881 + Psyr_4496 0.80 +0.3 5,359,881 + Psyr_4496 0.80 -0.9 5,359,882 - Psyr_4496 0.81 -0.2 5,359,882 - Psyr_4496 0.81 -0.3 5,359,882 - Psyr_4496 0.81 +1.2 5,359,882 - Psyr_4496 0.81 -0.1 5,359,982 + +1.0 5,359,982 + +1.1 5,359,982 + +0.6 5,359,983 - +1.6 5,360,018 + +0.5 5,360,018 + +1.8 5,360,019 - -0.2 5,360,019 - +0.6 5,360,019 - +1.2 5,360,019 - +0.9 5,360,035 + +0.0 5,360,099 + +1.4 5,360,099 + -0.4 5,360,099 + +1.2 5,360,099 + -0.7 5,360,099 + +0.7 5,360,099 + -0.1 5,360,099 + -0.6 5,360,099 + +2.0 5,360,099 + -0.2 5,360,099 + +0.5 5,360,099 + -1.0 5,360,099 + +1.1 5,360,100 - -0.8 5,360,100 - +1.1 5,360,100 - +1.2 5,360,100 - +0.2 5,360,100 - -0.2 5,360,100 - +2.2 5,360,100 - -0.0 5,360,103 + +1.3 5,360,103 + +0.3 5,360,103 + +1.2 5,360,103 + +0.8 5,360,103 + -0.0 5,360,103 + -0.6 5,360,103 + +0.8 5,360,103 + -0.5 5,360,103 + +0.8 5,360,103 + -0.6 5,360,103 + -1.2 5,360,103 + -0.4 5,360,104 - -0.5 5,360,104 - -0.1 5,360,104 - +0.4 5,360,104 - -0.2 5,360,104 - +0.3 5,360,104 - -0.6 5,360,104 - +0.4 5,360,104 - -0.2 5,360,104 - -0.9 5,360,104 - +1.2 5,360,104 - +1.5 5,360,207 - Psyr_4497 0.14 +1.4 5,360,207 - Psyr_4497 0.14 +0.5 5,360,325 + Psyr_4497 0.30 -0.1 5,360,325 + Psyr_4497 0.30 -1.1 5,360,325 + Psyr_4497 0.30 -1.5 5,360,325 + Psyr_4497 0.30 -0.2 5,360,326 - Psyr_4497 0.30 +0.5 5,360,333 - Psyr_4497 0.31 +1.0 5,360,471 + Psyr_4497 0.50 +1.1 5,360,471 + Psyr_4497 0.50 +0.6 5,360,471 + Psyr_4497 0.50 +0.2 5,360,472 - Psyr_4497 0.50 +0.8 5,360,472 - Psyr_4497 0.50 +1.3 5,360,472 - Psyr_4497 0.50 +0.4 5,360,551 + Psyr_4497 0.61 -1.3 5,360,551 + Psyr_4497 0.61 +0.5 5,360,551 + Psyr_4497 0.61 +1.1 5,360,551 + Psyr_4497 0.61 -1.8 5,360,551 + Psyr_4497 0.61 -0.7 5,360,552 - Psyr_4497 0.61 -1.2 5,360,552 - Psyr_4497 0.61 -0.1 5,360,552 - Psyr_4497 0.61 -0.2 5,360,677 + Psyr_4497 0.79 +0.9 5,360,678 - Psyr_4497 0.79 +0.8 5,360,697 + Psyr_4497 0.81 -1.9 5,360,894 + Psyr_4498 0.15 -0.8 5,361,171 + Psyr_4498 0.80 -0.6 5,361,256 - -0.1 5,361,392 + +0.2 5,361,392 + -0.6 5,361,392 + +0.9 5,361,392 + +0.8 5,361,392 + -0.2 5,361,392 + +0.4 5,361,392 + -0.8 5,361,392 + +0.8 5,361,392 + -0.9 5,361,392 + -0.7 5,361,392 + -0.1 5,361,392 + +1.2 5,361,392 + +1.5 5,361,392 + +0.1 5,361,392 + +0.8 5,361,392 + -0.1 5,361,393 - +0.4 5,361,393 - -0.1 5,361,393 - +1.3 5,361,393 - +0.8 5,361,393 - -1.6 5,361,393 - -0.1 5,361,393 - +0.9 5,361,393 - +1.3 5,361,393 - +0.9 5,361,393 - +0.4 5,361,393 - -0.2 5,361,393 - +2.3 5,361,393 - +0.1 5,361,393 - -0.4 5,361,393 - -0.5 5,361,393 - -0.2 5,361,393 - +0.2 5,361,456 + -0.6 5,361,456 + +0.7 5,361,456 + -0.2 5,361,456 + +1.3 5,361,457 - +0.8 5,361,457 - -0.2 5,361,457 - +1.1 5,361,457 - +0.3 5,361,457 - +2.3 5,361,457 - -0.4 5,361,478 + -0.4 5,361,478 + +2.3 5,361,478 + +0.8 5,361,478 + +0.9 5,361,478 + +0.7 5,361,478 + -1.2 5,361,478 + -0.0 5,361,478 + -0.6 5,361,478 + -0.6 5,361,478 + +0.1 5,361,478 + -0.7 5,361,478 + -0.2 5,361,478 + -0.0 5,361,478 + -0.8 5,361,479 - -0.5 5,361,479 - -1.1 5,361,479 - -0.8 5,361,479 - +0.3 5,361,479 - -0.0 5,361,479 - +0.2 5,361,479 - +0.6 5,361,479 - +0.8 5,361,479 - +0.8 5,361,479 - -0.7 5,361,479 - -0.3 5,361,479 - +0.5 5,361,507 + +1.0 5,361,606 + Psyr_4499 0.11 +0.2 5,361,607 - Psyr_4499 0.11 -0.4 5,361,662 + Psyr_4499 0.14 +0.2 5,361,662 + Psyr_4499 0.14 -0.2 5,361,662 + Psyr_4499 0.14 +0.0 5,361,662 + Psyr_4499 0.14 +0.3 5,361,662 + Psyr_4499 0.14 +0.8 5,361,662 + Psyr_4499 0.14 -0.1 5,361,662 + Psyr_4499 0.14 -0.1 5,361,662 + Psyr_4499 0.14 -0.3 5,361,662 + Psyr_4499 0.14 +0.6 5,361,662 + Psyr_4499 0.14 +1.1 5,361,662 + Psyr_4499 0.14 +0.8 5,361,662 + Psyr_4499 0.14 -0.2 5,361,663 - Psyr_4499 0.14 +0.8 5,361,663 - Psyr_4499 0.14 -0.2 5,361,663 - Psyr_4499 0.14 +0.3 5,361,663 - Psyr_4499 0.14 +0.8 5,361,663 - Psyr_4499 0.14 -0.7 5,361,663 - Psyr_4499 0.14 -2.1 5,361,663 - Psyr_4499 0.14 +0.4 5,361,663 - Psyr_4499 0.14 +0.2 5,361,663 - Psyr_4499 0.14 -0.3 5,361,663 - Psyr_4499 0.14 -1.4 5,361,663 - Psyr_4499 0.14 +0.6 5,361,663 - Psyr_4499 0.14 -0.8 5,361,663 - Psyr_4499 0.14 -0.6 5,361,695 + Psyr_4499 0.15 -0.2 5,361,696 - Psyr_4499 0.15 -0.2 5,361,696 - Psyr_4499 0.15 -1.2 5,361,832 + Psyr_4499 0.22 -0.3 5,361,854 + Psyr_4499 0.23 -0.8 5,361,854 + Psyr_4499 0.23 +1.3 5,361,854 + Psyr_4499 0.23 +2.9 5,361,854 + Psyr_4499 0.23 -0.0 5,361,854 + Psyr_4499 0.23 +1.2 5,361,854 + Psyr_4499 0.23 +0.8 5,361,854 + Psyr_4499 0.23 -0.8 5,361,854 + Psyr_4499 0.23 +0.4 5,361,855 - Psyr_4499 0.23 -1.1 5,361,855 - Psyr_4499 0.23 +0.0 5,361,855 - Psyr_4499 0.23 +1.3 5,361,855 - Psyr_4499 0.23 +0.7 5,361,855 - Psyr_4499 0.23 +0.3 5,361,855 - Psyr_4499 0.23 -0.0 5,361,855 - Psyr_4499 0.23 -0.2 5,361,855 - Psyr_4499 0.23 +0.3 5,361,855 - Psyr_4499 0.23 -0.7 5,361,887 + Psyr_4499 0.24 -1.4 5,361,887 + Psyr_4499 0.24 +0.3 5,361,887 + Psyr_4499 0.24 -0.1 5,361,887 + Psyr_4499 0.24 +0.2 5,361,887 + Psyr_4499 0.24 +2.6 5,361,888 - Psyr_4499 0.24 +0.8 5,361,888 - Psyr_4499 0.24 +1.2 5,361,888 - Psyr_4499 0.24 +0.4 5,361,888 - Psyr_4499 0.24 -0.3 5,361,888 - Psyr_4499 0.24 +0.5 5,361,892 - Psyr_4499 0.25 +1.7 5,361,956 + Psyr_4499 0.28 -0.0 5,361,956 + Psyr_4499 0.28 +0.2 5,361,956 + Psyr_4499 0.28 -0.4 5,361,956 + Psyr_4499 0.28 +0.3 5,361,956 + Psyr_4499 0.28 +0.4 5,361,956 + Psyr_4499 0.28 +1.1 5,361,956 + Psyr_4499 0.28 +0.5 5,361,957 - Psyr_4499 0.28 -0.2 5,361,957 - Psyr_4499 0.28 +1.2 5,361,957 - Psyr_4499 0.28 +0.6 5,361,957 - Psyr_4499 0.28 +2.6 5,361,957 - Psyr_4499 0.28 -0.6 5,361,957 - Psyr_4499 0.28 +1.3 5,361,957 - Psyr_4499 0.28 +0.4 5,361,957 - Psyr_4499 0.28 +1.7 5,361,957 - Psyr_4499 0.28 -0.4 5,361,957 - Psyr_4499 0.28 +1.4 5,361,957 - Psyr_4499 0.28 -1.4 5,361,958 + Psyr_4499 0.28 -1.2 5,361,959 - Psyr_4499 0.28 -1.1 5,362,136 + Psyr_4499 0.36 -0.7 5,362,227 - Psyr_4499 0.40 +0.5 5,362,227 - Psyr_4499 0.40 +0.1 5,362,241 + Psyr_4499 0.41 -0.0 5,362,241 + Psyr_4499 0.41 +1.0 5,362,242 - Psyr_4499 0.41 +2.8 5,362,256 + Psyr_4499 0.42 -1.0
Or see this region's nucleotide sequence