Experiment: KB with Rifampicin 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4255 and Psyr_4256 are separated by 154 nucleotides Psyr_4256 and Psyr_4257 are separated by 108 nucleotides Psyr_4257 and Psyr_4258 are separated by 120 nucleotides Psyr_4258 and Psyr_4259 are separated by 168 nucleotides
Psyr_4255: Psyr_4255 - FKBP-type peptidyl-prolyl isomerase, N-terminal:Peptidylprolyl isomerase, FKBP-type, at 5,072,884 to 5,073,501
_4255
Psyr_4256: Psyr_4256 - conserved hypothetical protein, at 5,073,656 to 5,073,964
_4256
Psyr_4257: Psyr_4257 - Uncharacterized protein UPF0114, at 5,074,073 to 5,074,561
_4257
Psyr_4258: Psyr_4258 - conserved hypothetical protein, at 5,074,682 to 5,075,011
_4258
Psyr_4259: Psyr_4259 - ATP-dependent protease, putative, at 5,075,180 to 5,077,615
_4259
Position (kb) 5074
5075 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5073.080 kb on + strand, within Psyr_4255 at 5073.081 kb on - strand, within Psyr_4255 at 5073.081 kb on - strand, within Psyr_4255 at 5073.122 kb on + strand, within Psyr_4255 at 5073.134 kb on - strand, within Psyr_4255 at 5073.242 kb on + strand, within Psyr_4255 at 5073.459 kb on - strand at 5073.525 kb on - strand at 5073.525 kb on - strand at 5073.525 kb on - strand at 5073.525 kb on - strand at 5073.577 kb on - strand at 5073.577 kb on - strand at 5073.577 kb on - strand at 5073.604 kb on + strand at 5073.628 kb on + strand at 5073.628 kb on + strand at 5073.629 kb on - strand at 5073.644 kb on - strand at 5073.757 kb on - strand, within Psyr_4256 at 5073.773 kb on + strand, within Psyr_4256 at 5073.773 kb on + strand, within Psyr_4256 at 5073.774 kb on - strand, within Psyr_4256 at 5073.882 kb on + strand, within Psyr_4256 at 5073.882 kb on + strand, within Psyr_4256 at 5073.882 kb on + strand, within Psyr_4256 at 5073.882 kb on + strand, within Psyr_4256 at 5073.882 kb on + strand, within Psyr_4256 at 5073.882 kb on + strand, within Psyr_4256 at 5073.882 kb on + strand, within Psyr_4256 at 5073.883 kb on - strand, within Psyr_4256 at 5073.883 kb on - strand, within Psyr_4256 at 5073.883 kb on - strand, within Psyr_4256 at 5073.883 kb on - strand, within Psyr_4256 at 5073.958 kb on - strand at 5073.958 kb on - strand at 5074.011 kb on + strand at 5074.012 kb on - strand at 5074.012 kb on - strand at 5074.099 kb on - strand at 5074.146 kb on + strand, within Psyr_4257 at 5074.146 kb on + strand, within Psyr_4257 at 5074.146 kb on + strand, within Psyr_4257 at 5074.146 kb on + strand, within Psyr_4257 at 5074.147 kb on - strand, within Psyr_4257 at 5074.147 kb on - strand, within Psyr_4257 at 5074.147 kb on - strand, within Psyr_4257 at 5074.147 kb on - strand, within Psyr_4257 at 5074.159 kb on - strand, within Psyr_4257 at 5074.503 kb on + strand, within Psyr_4257 at 5074.503 kb on + strand, within Psyr_4257 at 5074.504 kb on - strand, within Psyr_4257 at 5074.504 kb on - strand, within Psyr_4257 at 5074.504 kb on - strand, within Psyr_4257 at 5074.533 kb on + strand at 5074.533 kb on + strand at 5074.533 kb on + strand at 5074.533 kb on + strand at 5074.533 kb on + strand at 5074.533 kb on + strand at 5074.533 kb on + strand at 5074.533 kb on + strand at 5074.533 kb on + strand at 5074.533 kb on + strand at 5074.533 kb on + strand at 5074.533 kb on + strand at 5074.533 kb on + strand at 5074.533 kb on + strand at 5074.533 kb on + strand at 5074.533 kb on + strand at 5074.533 kb on + strand at 5074.533 kb on + strand at 5074.533 kb on + strand at 5074.534 kb on - strand at 5074.534 kb on - strand at 5074.534 kb on - strand at 5074.534 kb on - strand at 5074.534 kb on - strand at 5074.534 kb on - strand at 5074.534 kb on - strand at 5074.534 kb on - strand at 5074.534 kb on - strand at 5074.534 kb on - strand at 5074.534 kb on - strand at 5074.534 kb on - strand at 5074.534 kb on - strand at 5074.581 kb on + strand at 5074.581 kb on + strand at 5074.581 kb on + strand at 5074.582 kb on - strand at 5074.597 kb on + strand at 5074.597 kb on + strand at 5074.598 kb on - strand at 5074.598 kb on - strand at 5074.598 kb on - strand at 5074.599 kb on + strand at 5074.599 kb on + strand at 5074.599 kb on + strand at 5074.600 kb on - strand at 5074.600 kb on - strand at 5074.600 kb on - strand at 5074.600 kb on - strand at 5074.654 kb on + strand at 5074.683 kb on + strand at 5074.745 kb on + strand, within Psyr_4258 at 5074.745 kb on + strand, within Psyr_4258 at 5074.745 kb on + strand, within Psyr_4258 at 5074.745 kb on + strand, within Psyr_4258 at 5074.745 kb on + strand, within Psyr_4258 at 5074.745 kb on + strand, within Psyr_4258 at 5074.745 kb on + strand, within Psyr_4258 at 5074.745 kb on + strand, within Psyr_4258 at 5074.745 kb on + strand, within Psyr_4258 at 5074.746 kb on - strand, within Psyr_4258 at 5074.746 kb on - strand, within Psyr_4258 at 5074.746 kb on - strand, within Psyr_4258 at 5074.746 kb on - strand, within Psyr_4258 at 5074.746 kb on - strand, within Psyr_4258 at 5074.746 kb on - strand, within Psyr_4258 at 5074.746 kb on - strand, within Psyr_4258 at 5074.746 kb on - strand, within Psyr_4258 at 5074.746 kb on - strand, within Psyr_4258 at 5074.746 kb on - strand, within Psyr_4258 at 5074.762 kb on + strand, within Psyr_4258 at 5074.763 kb on - strand, within Psyr_4258 at 5074.788 kb on - strand, within Psyr_4258 at 5075.002 kb on + strand at 5075.035 kb on + strand at 5075.036 kb on - strand at 5075.100 kb on + strand at 5075.100 kb on + strand at 5075.100 kb on + strand at 5075.100 kb on + strand at 5075.100 kb on + strand at 5075.101 kb on - strand at 5075.381 kb on + strand at 5075.382 kb on - strand at 5075.382 kb on - strand at 5075.382 kb on - strand at 5075.388 kb on + strand at 5075.388 kb on + strand at 5075.389 kb on - strand at 5075.389 kb on - strand at 5075.389 kb on - strand at 5075.389 kb on - strand at 5075.389 kb on - strand at 5075.389 kb on - strand at 5075.389 kb on - strand at 5075.421 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Rifampicin 0.1 mg/ml remove 5,073,080 + Psyr_4255 0.32 +0.8 5,073,081 - Psyr_4255 0.32 +0.5 5,073,081 - Psyr_4255 0.32 +0.1 5,073,122 + Psyr_4255 0.39 -0.2 5,073,134 - Psyr_4255 0.40 -1.6 5,073,242 + Psyr_4255 0.58 +0.5 5,073,459 - +0.8 5,073,525 - +0.8 5,073,525 - +0.2 5,073,525 - +0.1 5,073,525 - +0.0 5,073,577 - -0.5 5,073,577 - -2.8 5,073,577 - -0.5 5,073,604 + -1.0 5,073,628 + -0.3 5,073,628 + -0.8 5,073,629 - +0.2 5,073,644 - -0.4 5,073,757 - Psyr_4256 0.33 -0.4 5,073,773 + Psyr_4256 0.38 -0.1 5,073,773 + Psyr_4256 0.38 +0.2 5,073,774 - Psyr_4256 0.38 -1.8 5,073,882 + Psyr_4256 0.73 -0.4 5,073,882 + Psyr_4256 0.73 -0.4 5,073,882 + Psyr_4256 0.73 +0.8 5,073,882 + Psyr_4256 0.73 +0.1 5,073,882 + Psyr_4256 0.73 -0.3 5,073,882 + Psyr_4256 0.73 -0.2 5,073,882 + Psyr_4256 0.73 +0.8 5,073,883 - Psyr_4256 0.73 +3.1 5,073,883 - Psyr_4256 0.73 -0.5 5,073,883 - Psyr_4256 0.73 -0.5 5,073,883 - Psyr_4256 0.73 +0.6 5,073,958 - +0.1 5,073,958 - -0.7 5,074,011 + -1.2 5,074,012 - -0.9 5,074,012 - +0.1 5,074,099 - -0.4 5,074,146 + Psyr_4257 0.15 -0.3 5,074,146 + Psyr_4257 0.15 -0.6 5,074,146 + Psyr_4257 0.15 -1.2 5,074,146 + Psyr_4257 0.15 -0.9 5,074,147 - Psyr_4257 0.15 +1.8 5,074,147 - Psyr_4257 0.15 +0.0 5,074,147 - Psyr_4257 0.15 -0.6 5,074,147 - Psyr_4257 0.15 -0.9 5,074,159 - Psyr_4257 0.18 -0.9 5,074,503 + Psyr_4257 0.88 -0.6 5,074,503 + Psyr_4257 0.88 +1.5 5,074,504 - Psyr_4257 0.88 +0.0 5,074,504 - Psyr_4257 0.88 -0.6 5,074,504 - Psyr_4257 0.88 -0.4 5,074,533 + +2.2 5,074,533 + -0.5 5,074,533 + -2.7 5,074,533 + +1.2 5,074,533 + -0.0 5,074,533 + -1.4 5,074,533 + -0.3 5,074,533 + -2.7 5,074,533 + -1.3 5,074,533 + -1.2 5,074,533 + +1.0 5,074,533 + -0.2 5,074,533 + +0.1 5,074,533 + -0.9 5,074,533 + +0.1 5,074,533 + -0.5 5,074,533 + -0.8 5,074,533 + +0.4 5,074,533 + -0.6 5,074,534 - -0.8 5,074,534 - -0.3 5,074,534 - +1.1 5,074,534 - -0.0 5,074,534 - +0.1 5,074,534 - +0.4 5,074,534 - +0.1 5,074,534 - +0.6 5,074,534 - -0.9 5,074,534 - +1.3 5,074,534 - -0.2 5,074,534 - +1.0 5,074,534 - -0.3 5,074,581 + +1.8 5,074,581 + +1.6 5,074,581 + +1.2 5,074,582 - -0.2 5,074,597 + -0.6 5,074,597 + +0.0 5,074,598 - -2.2 5,074,598 - -0.7 5,074,598 - -0.6 5,074,599 + +0.0 5,074,599 + +0.8 5,074,599 + +0.1 5,074,600 - -0.6 5,074,600 - -0.1 5,074,600 - -0.1 5,074,600 - +1.0 5,074,654 + +0.2 5,074,683 + -0.1 5,074,745 + Psyr_4258 0.19 -0.4 5,074,745 + Psyr_4258 0.19 +0.0 5,074,745 + Psyr_4258 0.19 -0.1 5,074,745 + Psyr_4258 0.19 -0.2 5,074,745 + Psyr_4258 0.19 -1.7 5,074,745 + Psyr_4258 0.19 +0.2 5,074,745 + Psyr_4258 0.19 -0.0 5,074,745 + Psyr_4258 0.19 +0.1 5,074,745 + Psyr_4258 0.19 +1.0 5,074,746 - Psyr_4258 0.19 +0.7 5,074,746 - Psyr_4258 0.19 -1.3 5,074,746 - Psyr_4258 0.19 +1.2 5,074,746 - Psyr_4258 0.19 +0.4 5,074,746 - Psyr_4258 0.19 +2.1 5,074,746 - Psyr_4258 0.19 +0.8 5,074,746 - Psyr_4258 0.19 +0.5 5,074,746 - Psyr_4258 0.19 +2.0 5,074,746 - Psyr_4258 0.19 +0.3 5,074,746 - Psyr_4258 0.19 -0.0 5,074,762 + Psyr_4258 0.24 -0.6 5,074,763 - Psyr_4258 0.25 -0.7 5,074,788 - Psyr_4258 0.32 -0.3 5,075,002 + -0.1 5,075,035 + +0.6 5,075,036 - +0.8 5,075,100 + -0.6 5,075,100 + -0.4 5,075,100 + +0.8 5,075,100 + -1.0 5,075,100 + -0.1 5,075,101 - +2.4 5,075,381 + +0.8 5,075,382 - +0.7 5,075,382 - -0.6 5,075,382 - +0.3 5,075,388 + +0.0 5,075,388 + +0.6 5,075,389 - +0.2 5,075,389 - -0.8 5,075,389 - -0.9 5,075,389 - +0.4 5,075,389 - +1.5 5,075,389 - -0.2 5,075,389 - +0.3 5,075,421 - +0.5
Or see this region's nucleotide sequence