Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4151

Experiment: KB with Rifampicin 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4149 and Psyr_4150 are separated by 2 nucleotidesPsyr_4150 and Psyr_4151 are separated by 15 nucleotidesPsyr_4151 and Psyr_4152 are separated by 186 nucleotidesPsyr_4152 and Psyr_4153 are separated by 1 nucleotides Psyr_4149: Psyr_4149 - PTS IIA-like nitrogen-regulatory protein PtsN, at 4,936,465 to 4,936,929 _4149 Psyr_4150: Psyr_4150 - Uncharacterized P-loop ATPase protein UPF0042, at 4,936,932 to 4,937,789 _4150 Psyr_4151: Psyr_4151 - Phosphocarrier HPr protein, at 4,937,805 to 4,938,077 _4151 Psyr_4152: Psyr_4152 - Superoxide dismutase, at 4,938,264 to 4,938,875 _4152 Psyr_4153: Psyr_4153 - conserved hypothetical protein, at 4,938,877 to 4,939,338 _4153 Position (kb) 4937 4938 4939Strain fitness (log2 ratio) -2 -1 0 1 2at 4936.976 kb on + strandat 4937.010 kb on + strandat 4937.107 kb on + strand, within Psyr_4150at 4937.164 kb on + strand, within Psyr_4150at 4937.164 kb on + strand, within Psyr_4150at 4937.164 kb on + strand, within Psyr_4150at 4937.165 kb on - strand, within Psyr_4150at 4937.177 kb on + strand, within Psyr_4150at 4937.197 kb on - strand, within Psyr_4150at 4937.294 kb on - strand, within Psyr_4150at 4937.294 kb on - strand, within Psyr_4150at 4937.371 kb on - strand, within Psyr_4150at 4937.401 kb on + strand, within Psyr_4150at 4937.515 kb on - strand, within Psyr_4150at 4937.568 kb on + strand, within Psyr_4150at 4937.568 kb on + strand, within Psyr_4150at 4937.664 kb on + strand, within Psyr_4150at 4937.664 kb on + strand, within Psyr_4150at 4937.664 kb on + strand, within Psyr_4150at 4937.664 kb on + strand, within Psyr_4150at 4937.664 kb on + strand, within Psyr_4150at 4937.664 kb on + strand, within Psyr_4150at 4937.664 kb on + strand, within Psyr_4150at 4937.664 kb on + strand, within Psyr_4150at 4937.664 kb on + strand, within Psyr_4150at 4937.665 kb on - strand, within Psyr_4150at 4937.665 kb on - strand, within Psyr_4150at 4937.665 kb on - strand, within Psyr_4150at 4937.665 kb on - strand, within Psyr_4150at 4937.665 kb on - strand, within Psyr_4150at 4937.665 kb on - strand, within Psyr_4150at 4937.665 kb on - strand, within Psyr_4150at 4937.669 kb on + strand, within Psyr_4150at 4937.687 kb on + strand, within Psyr_4150at 4937.940 kb on - strand, within Psyr_4151at 4938.075 kb on + strandat 4938.075 kb on + strandat 4938.075 kb on + strandat 4938.075 kb on + strandat 4938.075 kb on + strandat 4938.075 kb on + strandat 4938.076 kb on - strandat 4938.076 kb on - strandat 4938.236 kb on + strandat 4938.237 kb on - strandat 4938.320 kb on - strandat 4938.320 kb on - strandat 4938.320 kb on - strandat 4938.334 kb on + strand, within Psyr_4152at 4938.334 kb on + strand, within Psyr_4152at 4938.334 kb on + strand, within Psyr_4152at 4938.334 kb on + strand, within Psyr_4152at 4938.334 kb on + strand, within Psyr_4152at 4938.334 kb on + strand, within Psyr_4152at 4938.364 kb on + strand, within Psyr_4152at 4938.364 kb on + strand, within Psyr_4152at 4938.364 kb on + strand, within Psyr_4152at 4938.367 kb on + strand, within Psyr_4152at 4938.367 kb on + strand, within Psyr_4152at 4938.367 kb on + strand, within Psyr_4152at 4938.368 kb on - strand, within Psyr_4152at 4938.368 kb on - strand, within Psyr_4152at 4938.368 kb on - strand, within Psyr_4152at 4938.368 kb on - strand, within Psyr_4152at 4938.368 kb on - strand, within Psyr_4152at 4938.435 kb on - strand, within Psyr_4152at 4938.772 kb on + strand, within Psyr_4152at 4938.772 kb on + strand, within Psyr_4152at 4938.772 kb on + strand, within Psyr_4152at 4938.772 kb on + strand, within Psyr_4152at 4938.772 kb on + strand, within Psyr_4152at 4938.772 kb on + strand, within Psyr_4152at 4938.772 kb on + strand, within Psyr_4152at 4938.772 kb on + strand, within Psyr_4152at 4938.772 kb on + strand, within Psyr_4152at 4938.773 kb on - strand, within Psyr_4152at 4938.773 kb on - strand, within Psyr_4152at 4938.773 kb on - strand, within Psyr_4152at 4938.773 kb on - strand, within Psyr_4152at 4938.773 kb on - strand, within Psyr_4152at 4938.773 kb on - strand, within Psyr_4152at 4938.773 kb on - strand, within Psyr_4152at 4938.794 kb on - strand, within Psyr_4152at 4938.821 kb on + strandat 4938.822 kb on - strandat 4938.822 kb on - strandat 4938.841 kb on + strandat 4938.842 kb on - strandat 4938.842 kb on - strandat 4938.848 kb on - strandat 4938.848 kb on - strandat 4938.868 kb on + strandat 4938.868 kb on + strandat 4938.890 kb on + strandat 4939.019 kb on + strand, within Psyr_4153at 4939.019 kb on + strand, within Psyr_4153at 4939.019 kb on + strand, within Psyr_4153

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Rifampicin 0.1 mg/ml
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4,936,976 + +0.3
4,937,010 + -1.4
4,937,107 + Psyr_4150 0.20 -0.3
4,937,164 + Psyr_4150 0.27 +0.0
4,937,164 + Psyr_4150 0.27 +0.9
4,937,164 + Psyr_4150 0.27 -0.8
4,937,165 - Psyr_4150 0.27 +0.1
4,937,177 + Psyr_4150 0.29 +0.6
4,937,197 - Psyr_4150 0.31 +0.0
4,937,294 - Psyr_4150 0.42 +1.0
4,937,294 - Psyr_4150 0.42 +0.4
4,937,371 - Psyr_4150 0.51 -0.1
4,937,401 + Psyr_4150 0.55 +0.1
4,937,515 - Psyr_4150 0.68 -1.0
4,937,568 + Psyr_4150 0.74 +1.7
4,937,568 + Psyr_4150 0.74 +1.5
4,937,664 + Psyr_4150 0.85 +0.5
4,937,664 + Psyr_4150 0.85 +0.7
4,937,664 + Psyr_4150 0.85 +0.9
4,937,664 + Psyr_4150 0.85 +0.7
4,937,664 + Psyr_4150 0.85 -0.3
4,937,664 + Psyr_4150 0.85 +0.0
4,937,664 + Psyr_4150 0.85 +0.7
4,937,664 + Psyr_4150 0.85 +0.7
4,937,664 + Psyr_4150 0.85 -0.7
4,937,665 - Psyr_4150 0.85 -0.0
4,937,665 - Psyr_4150 0.85 -0.8
4,937,665 - Psyr_4150 0.85 +0.1
4,937,665 - Psyr_4150 0.85 +2.0
4,937,665 - Psyr_4150 0.85 -0.5
4,937,665 - Psyr_4150 0.85 +1.8
4,937,665 - Psyr_4150 0.85 -0.8
4,937,669 + Psyr_4150 0.86 +0.0
4,937,687 + Psyr_4150 0.88 -0.6
4,937,940 - Psyr_4151 0.49 -1.7
4,938,075 + +0.7
4,938,075 + -0.6
4,938,075 + -0.7
4,938,075 + +0.0
4,938,075 + +1.1
4,938,075 + +1.7
4,938,076 - -0.8
4,938,076 - -1.1
4,938,236 + +0.3
4,938,237 - -2.1
4,938,320 - +1.2
4,938,320 - +0.2
4,938,320 - -0.1
4,938,334 + Psyr_4152 0.11 +0.5
4,938,334 + Psyr_4152 0.11 +0.9
4,938,334 + Psyr_4152 0.11 +1.0
4,938,334 + Psyr_4152 0.11 +1.3
4,938,334 + Psyr_4152 0.11 -0.5
4,938,334 + Psyr_4152 0.11 -0.1
4,938,364 + Psyr_4152 0.16 -0.9
4,938,364 + Psyr_4152 0.16 +0.7
4,938,364 + Psyr_4152 0.16 -1.3
4,938,367 + Psyr_4152 0.17 +0.7
4,938,367 + Psyr_4152 0.17 +0.1
4,938,367 + Psyr_4152 0.17 -0.6
4,938,368 - Psyr_4152 0.17 +0.6
4,938,368 - Psyr_4152 0.17 +0.7
4,938,368 - Psyr_4152 0.17 +0.6
4,938,368 - Psyr_4152 0.17 -0.9
4,938,368 - Psyr_4152 0.17 -0.7
4,938,435 - Psyr_4152 0.28 -0.9
4,938,772 + Psyr_4152 0.83 -0.0
4,938,772 + Psyr_4152 0.83 +0.7
4,938,772 + Psyr_4152 0.83 +0.9
4,938,772 + Psyr_4152 0.83 +0.5
4,938,772 + Psyr_4152 0.83 +1.1
4,938,772 + Psyr_4152 0.83 +0.1
4,938,772 + Psyr_4152 0.83 +1.7
4,938,772 + Psyr_4152 0.83 -0.6
4,938,772 + Psyr_4152 0.83 -0.1
4,938,773 - Psyr_4152 0.83 +0.3
4,938,773 - Psyr_4152 0.83 +0.1
4,938,773 - Psyr_4152 0.83 -0.7
4,938,773 - Psyr_4152 0.83 +0.1
4,938,773 - Psyr_4152 0.83 +1.0
4,938,773 - Psyr_4152 0.83 +0.2
4,938,773 - Psyr_4152 0.83 +0.2
4,938,794 - Psyr_4152 0.87 +1.1
4,938,821 + -0.0
4,938,822 - +0.3
4,938,822 - +0.7
4,938,841 + +0.3
4,938,842 - +0.5
4,938,842 - +0.6
4,938,848 - +1.0
4,938,848 - +1.2
4,938,868 + -1.1
4,938,868 + +0.7
4,938,890 + +1.7
4,939,019 + Psyr_4153 0.31 -2.2
4,939,019 + Psyr_4153 0.31 -0.3
4,939,019 + Psyr_4153 0.31 +0.4

Or see this region's nucleotide sequence