Experiment: KB with Rifampicin 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4049 and Psyr_4050 overlap by 43 nucleotides Psyr_4050 and Psyr_4051 are separated by 164 nucleotides Psyr_4051 and Psyr_4052 are separated by 28 nucleotides
Psyr_4049: Psyr_4049 - lyso-ornithine lipid acyltransferase, at 4,832,581 to 4,833,375
_4049
Psyr_4050: Psyr_4050 - Protein of unknown function DUF479, at 4,833,333 to 4,833,932
_4050
Psyr_4051: Psyr_4051 - transcriptional regulator, ArsR family, at 4,834,097 to 4,834,411
_4051
Psyr_4052: Psyr_4052 - General substrate transporter:Major facilitator superfamily, at 4,834,440 to 4,835,606
_4052
Position (kb) 4834
4835 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4833.228 kb on + strand, within Psyr_4049 at 4833.228 kb on + strand, within Psyr_4049 at 4833.228 kb on + strand, within Psyr_4049 at 4833.229 kb on - strand, within Psyr_4049 at 4833.398 kb on - strand, within Psyr_4050 at 4833.619 kb on + strand, within Psyr_4050 at 4833.620 kb on - strand, within Psyr_4050 at 4833.620 kb on - strand, within Psyr_4050 at 4833.718 kb on + strand, within Psyr_4050 at 4833.925 kb on + strand at 4833.925 kb on + strand at 4833.925 kb on + strand at 4833.925 kb on + strand at 4833.925 kb on + strand at 4833.925 kb on + strand at 4833.925 kb on + strand at 4833.926 kb on - strand at 4833.926 kb on - strand at 4833.926 kb on - strand at 4833.945 kb on - strand at 4833.945 kb on - strand at 4833.970 kb on + strand at 4833.973 kb on - strand at 4834.008 kb on + strand at 4834.008 kb on + strand at 4834.009 kb on - strand at 4834.016 kb on + strand at 4834.016 kb on + strand at 4834.016 kb on + strand at 4834.017 kb on - strand at 4834.017 kb on - strand at 4834.022 kb on + strand at 4834.022 kb on + strand at 4834.023 kb on - strand at 4834.049 kb on - strand at 4834.076 kb on + strand at 4834.119 kb on + strand at 4834.119 kb on + strand at 4834.119 kb on + strand at 4834.119 kb on + strand at 4834.119 kb on + strand at 4834.119 kb on + strand at 4834.119 kb on + strand at 4834.120 kb on - strand at 4834.120 kb on - strand at 4834.120 kb on - strand at 4834.120 kb on - strand at 4834.122 kb on + strand at 4834.122 kb on + strand at 4834.122 kb on + strand at 4834.122 kb on + strand at 4834.122 kb on + strand at 4834.122 kb on + strand at 4834.122 kb on + strand at 4834.122 kb on + strand at 4834.122 kb on + strand at 4834.123 kb on - strand at 4834.123 kb on - strand at 4834.123 kb on - strand at 4834.123 kb on - strand at 4834.123 kb on - strand at 4834.123 kb on - strand at 4834.202 kb on + strand, within Psyr_4051 at 4834.202 kb on + strand, within Psyr_4051 at 4834.203 kb on - strand, within Psyr_4051 at 4834.362 kb on + strand, within Psyr_4051 at 4834.362 kb on + strand, within Psyr_4051 at 4834.544 kb on - strand at 4834.710 kb on + strand, within Psyr_4052 at 4834.710 kb on + strand, within Psyr_4052 at 4834.711 kb on - strand, within Psyr_4052 at 4834.711 kb on - strand, within Psyr_4052 at 4834.861 kb on + strand, within Psyr_4052 at 4834.862 kb on - strand, within Psyr_4052 at 4835.100 kb on + strand, within Psyr_4052 at 4835.100 kb on + strand, within Psyr_4052 at 4835.100 kb on + strand, within Psyr_4052 at 4835.100 kb on + strand, within Psyr_4052 at 4835.100 kb on + strand, within Psyr_4052 at 4835.100 kb on + strand, within Psyr_4052 at 4835.100 kb on + strand, within Psyr_4052 at 4835.100 kb on + strand, within Psyr_4052 at 4835.100 kb on + strand, within Psyr_4052 at 4835.100 kb on + strand, within Psyr_4052 at 4835.100 kb on + strand, within Psyr_4052 at 4835.100 kb on + strand, within Psyr_4052 at 4835.100 kb on + strand, within Psyr_4052 at 4835.100 kb on + strand, within Psyr_4052 at 4835.101 kb on - strand, within Psyr_4052 at 4835.101 kb on - strand, within Psyr_4052 at 4835.101 kb on - strand, within Psyr_4052 at 4835.101 kb on - strand, within Psyr_4052 at 4835.101 kb on - strand, within Psyr_4052 at 4835.101 kb on - strand, within Psyr_4052 at 4835.101 kb on - strand, within Psyr_4052 at 4835.101 kb on - strand, within Psyr_4052 at 4835.101 kb on - strand, within Psyr_4052 at 4835.101 kb on - strand, within Psyr_4052 at 4835.135 kb on - strand, within Psyr_4052 at 4835.135 kb on - strand, within Psyr_4052 at 4835.278 kb on + strand, within Psyr_4052
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Rifampicin 0.1 mg/ml remove 4,833,228 + Psyr_4049 0.81 +0.1 4,833,228 + Psyr_4049 0.81 +0.7 4,833,228 + Psyr_4049 0.81 +0.5 4,833,229 - Psyr_4049 0.82 +0.7 4,833,398 - Psyr_4050 0.11 +0.2 4,833,619 + Psyr_4050 0.48 +0.2 4,833,620 - Psyr_4050 0.48 +0.9 4,833,620 - Psyr_4050 0.48 +0.1 4,833,718 + Psyr_4050 0.64 +2.7 4,833,925 + +0.7 4,833,925 + +3.3 4,833,925 + -0.5 4,833,925 + +1.4 4,833,925 + +0.1 4,833,925 + -0.5 4,833,925 + -0.3 4,833,926 - +0.2 4,833,926 - +0.3 4,833,926 - +0.5 4,833,945 - +0.9 4,833,945 - -0.3 4,833,970 + -2.0 4,833,973 - -0.1 4,834,008 + -0.8 4,834,008 + -1.3 4,834,009 - -0.7 4,834,016 + +3.3 4,834,016 + -0.6 4,834,016 + +0.4 4,834,017 - -0.1 4,834,017 - -0.5 4,834,022 + +0.2 4,834,022 + +0.4 4,834,023 - -0.7 4,834,049 - -1.5 4,834,076 + +0.2 4,834,119 + -0.2 4,834,119 + +0.8 4,834,119 + +0.1 4,834,119 + -0.7 4,834,119 + +0.7 4,834,119 + -1.0 4,834,119 + +0.7 4,834,120 - -1.3 4,834,120 - +0.9 4,834,120 - +0.7 4,834,120 - +0.1 4,834,122 + -0.6 4,834,122 + -2.0 4,834,122 + +0.4 4,834,122 + -0.9 4,834,122 + -0.3 4,834,122 + +2.3 4,834,122 + -0.1 4,834,122 + -0.6 4,834,122 + -0.1 4,834,123 - +1.7 4,834,123 - -0.8 4,834,123 - -0.3 4,834,123 - -0.1 4,834,123 - +1.8 4,834,123 - +0.1 4,834,202 + Psyr_4051 0.33 -1.9 4,834,202 + Psyr_4051 0.33 +0.1 4,834,203 - Psyr_4051 0.34 -0.7 4,834,362 + Psyr_4051 0.84 +0.7 4,834,362 + Psyr_4051 0.84 -0.4 4,834,544 - -0.0 4,834,710 + Psyr_4052 0.23 +0.7 4,834,710 + Psyr_4052 0.23 -1.0 4,834,711 - Psyr_4052 0.23 +0.1 4,834,711 - Psyr_4052 0.23 -2.9 4,834,861 + Psyr_4052 0.36 -0.0 4,834,862 - Psyr_4052 0.36 +0.2 4,835,100 + Psyr_4052 0.57 -0.2 4,835,100 + Psyr_4052 0.57 -0.2 4,835,100 + Psyr_4052 0.57 -0.7 4,835,100 + Psyr_4052 0.57 -1.1 4,835,100 + Psyr_4052 0.57 +0.4 4,835,100 + Psyr_4052 0.57 -0.9 4,835,100 + Psyr_4052 0.57 +0.1 4,835,100 + Psyr_4052 0.57 -0.4 4,835,100 + Psyr_4052 0.57 -0.1 4,835,100 + Psyr_4052 0.57 -0.3 4,835,100 + Psyr_4052 0.57 -0.7 4,835,100 + Psyr_4052 0.57 -0.5 4,835,100 + Psyr_4052 0.57 +0.4 4,835,100 + Psyr_4052 0.57 -0.1 4,835,101 - Psyr_4052 0.57 -1.0 4,835,101 - Psyr_4052 0.57 -0.0 4,835,101 - Psyr_4052 0.57 -1.2 4,835,101 - Psyr_4052 0.57 +0.6 4,835,101 - Psyr_4052 0.57 -0.6 4,835,101 - Psyr_4052 0.57 -1.9 4,835,101 - Psyr_4052 0.57 +1.4 4,835,101 - Psyr_4052 0.57 -1.1 4,835,101 - Psyr_4052 0.57 +1.9 4,835,101 - Psyr_4052 0.57 +0.1 4,835,135 - Psyr_4052 0.60 +0.4 4,835,135 - Psyr_4052 0.60 +0.8 4,835,278 + Psyr_4052 0.72 -1.6
Or see this region's nucleotide sequence