Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4013

Experiment: KB with Rifampicin 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4011 and Psyr_4012 overlap by 1 nucleotidesPsyr_4012 and Psyr_4013 overlap by 1 nucleotidesPsyr_4013 and Psyr_4014 are separated by 156 nucleotides Psyr_4011: Psyr_4011 - Thiolase, at 4,778,415 to 4,779,614 _4011 Psyr_4012: Psyr_4012 - Glutaconate CoA-transferase, at 4,779,614 to 4,780,393 _4012 Psyr_4013: Psyr_4013 - Glutaconate CoA-transferase, at 4,780,393 to 4,781,250 _4013 Psyr_4014: Psyr_4014 - regulatory protein, IclR, at 4,781,407 to 4,782,249 _4014 Position (kb) 4780 4781 4782Strain fitness (log2 ratio) -3 -2 -1 0 1at 4779.582 kb on - strandat 4779.599 kb on + strandat 4779.599 kb on + strandat 4779.599 kb on + strandat 4779.600 kb on - strandat 4779.600 kb on - strandat 4780.045 kb on - strand, within Psyr_4012at 4780.160 kb on + strand, within Psyr_4012at 4780.248 kb on + strand, within Psyr_4012at 4780.249 kb on - strand, within Psyr_4012at 4780.249 kb on - strand, within Psyr_4012at 4780.256 kb on + strand, within Psyr_4012at 4780.276 kb on + strand, within Psyr_4012at 4780.277 kb on - strand, within Psyr_4012at 4780.277 kb on - strand, within Psyr_4012at 4780.277 kb on - strand, within Psyr_4012at 4780.277 kb on - strand, within Psyr_4012at 4780.277 kb on - strand, within Psyr_4012at 4780.386 kb on + strandat 4780.387 kb on - strandat 4780.387 kb on - strandat 4780.387 kb on - strandat 4780.387 kb on - strandat 4780.394 kb on + strandat 4780.395 kb on - strandat 4780.460 kb on + strandat 4780.460 kb on + strandat 4780.460 kb on + strandat 4780.460 kb on + strandat 4780.460 kb on + strandat 4780.460 kb on + strandat 4780.460 kb on + strandat 4780.460 kb on + strandat 4780.460 kb on + strandat 4780.460 kb on + strandat 4780.460 kb on + strandat 4780.460 kb on + strandat 4780.461 kb on - strandat 4780.461 kb on - strandat 4780.461 kb on - strandat 4780.461 kb on - strandat 4780.461 kb on - strandat 4780.461 kb on - strandat 4780.461 kb on - strandat 4780.461 kb on - strandat 4780.461 kb on - strandat 4780.461 kb on - strandat 4780.461 kb on - strandat 4780.520 kb on + strand, within Psyr_4013at 4780.520 kb on + strand, within Psyr_4013at 4780.520 kb on + strand, within Psyr_4013at 4780.521 kb on - strand, within Psyr_4013at 4780.541 kb on + strand, within Psyr_4013at 4780.542 kb on - strand, within Psyr_4013at 4780.542 kb on - strand, within Psyr_4013at 4780.875 kb on - strand, within Psyr_4013at 4780.915 kb on + strand, within Psyr_4013at 4780.915 kb on + strand, within Psyr_4013at 4780.915 kb on + strand, within Psyr_4013at 4780.919 kb on + strand, within Psyr_4013at 4780.919 kb on + strand, within Psyr_4013at 4780.919 kb on + strand, within Psyr_4013at 4780.919 kb on + strand, within Psyr_4013at 4780.920 kb on - strand, within Psyr_4013at 4780.920 kb on - strand, within Psyr_4013at 4780.920 kb on - strand, within Psyr_4013at 4780.920 kb on - strand, within Psyr_4013at 4781.081 kb on + strand, within Psyr_4013at 4781.081 kb on + strand, within Psyr_4013at 4781.081 kb on + strand, within Psyr_4013at 4781.082 kb on - strand, within Psyr_4013at 4781.082 kb on - strand, within Psyr_4013at 4781.412 kb on + strandat 4781.413 kb on - strandat 4781.424 kb on + strandat 4781.425 kb on - strandat 4781.546 kb on + strand, within Psyr_4014at 4781.546 kb on + strand, within Psyr_4014at 4781.546 kb on + strand, within Psyr_4014at 4781.547 kb on - strand, within Psyr_4014at 4781.547 kb on - strand, within Psyr_4014at 4781.547 kb on - strand, within Psyr_4014at 4781.547 kb on - strand, within Psyr_4014at 4781.699 kb on + strand, within Psyr_4014at 4781.699 kb on + strand, within Psyr_4014at 4781.699 kb on + strand, within Psyr_4014at 4781.699 kb on + strand, within Psyr_4014at 4781.699 kb on + strand, within Psyr_4014at 4781.700 kb on - strand, within Psyr_4014at 4781.700 kb on - strand, within Psyr_4014at 4781.831 kb on + strand, within Psyr_4014at 4781.831 kb on + strand, within Psyr_4014at 4781.831 kb on + strand, within Psyr_4014at 4781.831 kb on + strand, within Psyr_4014at 4781.831 kb on + strand, within Psyr_4014at 4781.831 kb on + strand, within Psyr_4014at 4781.831 kb on + strand, within Psyr_4014at 4781.831 kb on + strand, within Psyr_4014at 4781.832 kb on - strand, within Psyr_4014at 4781.832 kb on - strand, within Psyr_4014at 4781.832 kb on - strand, within Psyr_4014at 4781.832 kb on - strand, within Psyr_4014at 4781.832 kb on - strand, within Psyr_4014at 4781.832 kb on - strand, within Psyr_4014at 4781.832 kb on - strand, within Psyr_4014at 4781.892 kb on + strand, within Psyr_4014at 4781.892 kb on + strand, within Psyr_4014at 4781.903 kb on + strand, within Psyr_4014at 4781.903 kb on + strand, within Psyr_4014at 4781.904 kb on - strand, within Psyr_4014at 4781.942 kb on + strand, within Psyr_4014at 4781.943 kb on - strand, within Psyr_4014at 4781.943 kb on - strand, within Psyr_4014at 4781.981 kb on + strand, within Psyr_4014at 4781.981 kb on + strand, within Psyr_4014at 4781.982 kb on - strand, within Psyr_4014at 4781.982 kb on - strand, within Psyr_4014at 4781.982 kb on - strand, within Psyr_4014at 4781.985 kb on + strand, within Psyr_4014at 4781.985 kb on + strand, within Psyr_4014at 4781.985 kb on + strand, within Psyr_4014at 4782.005 kb on + strand, within Psyr_4014at 4782.006 kb on - strand, within Psyr_4014at 4782.231 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Rifampicin 0.1 mg/ml
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4,779,582 - -0.9
4,779,599 + +0.0
4,779,599 + +0.4
4,779,599 + -0.5
4,779,600 - -0.0
4,779,600 - -0.8
4,780,045 - Psyr_4012 0.55 +1.1
4,780,160 + Psyr_4012 0.70 +0.7
4,780,248 + Psyr_4012 0.81 +0.3
4,780,249 - Psyr_4012 0.81 -0.1
4,780,249 - Psyr_4012 0.81 -0.7
4,780,256 + Psyr_4012 0.82 -0.5
4,780,276 + Psyr_4012 0.85 -0.5
4,780,277 - Psyr_4012 0.85 +0.2
4,780,277 - Psyr_4012 0.85 -0.4
4,780,277 - Psyr_4012 0.85 +0.9
4,780,277 - Psyr_4012 0.85 +0.8
4,780,277 - Psyr_4012 0.85 +0.9
4,780,386 + -0.7
4,780,387 - -0.6
4,780,387 - +0.3
4,780,387 - -0.4
4,780,387 - -0.2
4,780,394 + -0.8
4,780,395 - +0.3
4,780,460 + +1.2
4,780,460 + -0.2
4,780,460 + -0.6
4,780,460 + -0.1
4,780,460 + -1.0
4,780,460 + -0.9
4,780,460 + -0.1
4,780,460 + +1.2
4,780,460 + -1.2
4,780,460 + +0.4
4,780,460 + -1.9
4,780,460 + -0.5
4,780,461 - -0.3
4,780,461 - -0.7
4,780,461 - +0.1
4,780,461 - +0.1
4,780,461 - -0.5
4,780,461 - -0.3
4,780,461 - +0.0
4,780,461 - -0.4
4,780,461 - +0.2
4,780,461 - -0.5
4,780,461 - -0.4
4,780,520 + Psyr_4013 0.15 -0.4
4,780,520 + Psyr_4013 0.15 -0.4
4,780,520 + Psyr_4013 0.15 +0.7
4,780,521 - Psyr_4013 0.15 -0.9
4,780,541 + Psyr_4013 0.17 -0.2
4,780,542 - Psyr_4013 0.17 -1.3
4,780,542 - Psyr_4013 0.17 +0.3
4,780,875 - Psyr_4013 0.56 +0.1
4,780,915 + Psyr_4013 0.61 -0.5
4,780,915 + Psyr_4013 0.61 -0.3
4,780,915 + Psyr_4013 0.61 -0.7
4,780,919 + Psyr_4013 0.61 -0.4
4,780,919 + Psyr_4013 0.61 +0.8
4,780,919 + Psyr_4013 0.61 -1.7
4,780,919 + Psyr_4013 0.61 -0.5
4,780,920 - Psyr_4013 0.61 -1.2
4,780,920 - Psyr_4013 0.61 +0.3
4,780,920 - Psyr_4013 0.61 +0.5
4,780,920 - Psyr_4013 0.61 -1.0
4,781,081 + Psyr_4013 0.80 -0.3
4,781,081 + Psyr_4013 0.80 -0.7
4,781,081 + Psyr_4013 0.80 -0.8
4,781,082 - Psyr_4013 0.80 -0.7
4,781,082 - Psyr_4013 0.80 -1.5
4,781,412 + -0.9
4,781,413 - +1.2
4,781,424 + -1.0
4,781,425 - +0.1
4,781,546 + Psyr_4014 0.16 -0.7
4,781,546 + Psyr_4014 0.16 -0.2
4,781,546 + Psyr_4014 0.16 +0.1
4,781,547 - Psyr_4014 0.17 +0.2
4,781,547 - Psyr_4014 0.17 +0.3
4,781,547 - Psyr_4014 0.17 +0.1
4,781,547 - Psyr_4014 0.17 +0.3
4,781,699 + Psyr_4014 0.35 -0.5
4,781,699 + Psyr_4014 0.35 -0.2
4,781,699 + Psyr_4014 0.35 -2.2
4,781,699 + Psyr_4014 0.35 -1.7
4,781,699 + Psyr_4014 0.35 -1.0
4,781,700 - Psyr_4014 0.35 +0.3
4,781,700 - Psyr_4014 0.35 +0.5
4,781,831 + Psyr_4014 0.50 -0.8
4,781,831 + Psyr_4014 0.50 -0.1
4,781,831 + Psyr_4014 0.50 +0.3
4,781,831 + Psyr_4014 0.50 +0.3
4,781,831 + Psyr_4014 0.50 -1.3
4,781,831 + Psyr_4014 0.50 -0.4
4,781,831 + Psyr_4014 0.50 -0.4
4,781,831 + Psyr_4014 0.50 +1.0
4,781,832 - Psyr_4014 0.50 -0.1
4,781,832 - Psyr_4014 0.50 +0.2
4,781,832 - Psyr_4014 0.50 +0.7
4,781,832 - Psyr_4014 0.50 +0.7
4,781,832 - Psyr_4014 0.50 +1.7
4,781,832 - Psyr_4014 0.50 -0.0
4,781,832 - Psyr_4014 0.50 -0.7
4,781,892 + Psyr_4014 0.58 -3.2
4,781,892 + Psyr_4014 0.58 +0.3
4,781,903 + Psyr_4014 0.59 -0.1
4,781,903 + Psyr_4014 0.59 -0.3
4,781,904 - Psyr_4014 0.59 -0.2
4,781,942 + Psyr_4014 0.63 -0.2
4,781,943 - Psyr_4014 0.64 +0.2
4,781,943 - Psyr_4014 0.64 +1.1
4,781,981 + Psyr_4014 0.68 +0.4
4,781,981 + Psyr_4014 0.68 +0.7
4,781,982 - Psyr_4014 0.68 -0.1
4,781,982 - Psyr_4014 0.68 -1.3
4,781,982 - Psyr_4014 0.68 -0.9
4,781,985 + Psyr_4014 0.69 +1.4
4,781,985 + Psyr_4014 0.69 +0.3
4,781,985 + Psyr_4014 0.69 +1.3
4,782,005 + Psyr_4014 0.71 -0.7
4,782,006 - Psyr_4014 0.71 -0.7
4,782,231 + -0.7

Or see this region's nucleotide sequence