Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3915

Experiment: KB with Rifampicin 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3913 and Psyr_3914 are separated by 219 nucleotidesPsyr_3914 and Psyr_3915 are separated by 67 nucleotidesPsyr_3915 and Psyr_3916 are separated by 123 nucleotidesPsyr_3916 and Psyr_3917 are separated by 43 nucleotides Psyr_3913: Psyr_3913 - Helix-turn-helix, Fis-type, at 4,656,319 to 4,657,647 _3913 Psyr_3914: Psyr_3914 - DSBA oxidoreductase, at 4,657,867 to 4,658,514 _3914 Psyr_3915: Psyr_3915 - Alpha/beta hydrolase fold protein, at 4,658,582 to 4,659,574 _3915 Psyr_3916: Psyr_3916 - methionine synthase (B12-independent), at 4,659,698 to 4,660,495 _3916 Psyr_3917: Psyr_3917 - transcriptional regulator, LysR family, at 4,660,539 to 4,661,456 _3917 Position (kb) 4658 4659 4660Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 4657.778 kb on + strandat 4657.848 kb on - strandat 4657.869 kb on - strandat 4657.910 kb on - strandat 4657.910 kb on - strandat 4657.910 kb on - strandat 4657.940 kb on + strand, within Psyr_3914at 4657.941 kb on - strand, within Psyr_3914at 4657.941 kb on - strand, within Psyr_3914at 4657.941 kb on - strand, within Psyr_3914at 4658.024 kb on + strand, within Psyr_3914at 4658.024 kb on + strand, within Psyr_3914at 4658.132 kb on + strand, within Psyr_3914at 4658.132 kb on + strand, within Psyr_3914at 4658.133 kb on - strand, within Psyr_3914at 4658.133 kb on - strand, within Psyr_3914at 4658.133 kb on - strand, within Psyr_3914at 4658.219 kb on + strand, within Psyr_3914at 4658.219 kb on + strand, within Psyr_3914at 4658.219 kb on + strand, within Psyr_3914at 4658.219 kb on + strand, within Psyr_3914at 4658.219 kb on + strand, within Psyr_3914at 4658.219 kb on + strand, within Psyr_3914at 4658.220 kb on - strand, within Psyr_3914at 4658.220 kb on - strand, within Psyr_3914at 4658.220 kb on - strand, within Psyr_3914at 4658.220 kb on - strand, within Psyr_3914at 4658.220 kb on - strand, within Psyr_3914at 4658.220 kb on - strand, within Psyr_3914at 4658.220 kb on - strand, within Psyr_3914at 4658.220 kb on - strand, within Psyr_3914at 4658.224 kb on - strand, within Psyr_3914at 4658.289 kb on + strand, within Psyr_3914at 4658.289 kb on + strand, within Psyr_3914at 4658.289 kb on + strand, within Psyr_3914at 4658.289 kb on + strand, within Psyr_3914at 4658.290 kb on - strand, within Psyr_3914at 4658.290 kb on - strand, within Psyr_3914at 4658.318 kb on + strand, within Psyr_3914at 4658.530 kb on + strandat 4658.548 kb on + strandat 4658.549 kb on - strandat 4658.549 kb on - strandat 4658.584 kb on - strandat 4658.584 kb on - strandat 4659.040 kb on + strand, within Psyr_3915at 4659.040 kb on + strand, within Psyr_3915at 4659.041 kb on - strand, within Psyr_3915at 4659.223 kb on - strand, within Psyr_3915at 4659.223 kb on - strand, within Psyr_3915at 4659.252 kb on + strand, within Psyr_3915at 4659.448 kb on + strand, within Psyr_3915at 4659.448 kb on + strand, within Psyr_3915at 4659.448 kb on + strand, within Psyr_3915at 4659.456 kb on + strand, within Psyr_3915at 4659.491 kb on + strandat 4659.491 kb on + strandat 4659.491 kb on + strandat 4659.492 kb on - strandat 4659.602 kb on + strandat 4659.692 kb on - strandat 4659.694 kb on + strandat 4659.694 kb on + strandat 4659.694 kb on + strandat 4659.694 kb on + strandat 4659.694 kb on + strandat 4659.694 kb on + strandat 4659.694 kb on + strandat 4659.694 kb on + strandat 4659.694 kb on + strandat 4659.694 kb on + strandat 4659.695 kb on - strandat 4659.695 kb on - strandat 4659.695 kb on - strandat 4659.695 kb on - strandat 4659.695 kb on - strandat 4659.695 kb on - strandat 4659.695 kb on - strandat 4659.695 kb on - strandat 4659.695 kb on - strandat 4659.695 kb on - strandat 4659.700 kb on - strandat 4659.700 kb on - strandat 4659.787 kb on + strand, within Psyr_3916at 4659.788 kb on - strand, within Psyr_3916at 4659.816 kb on + strand, within Psyr_3916at 4659.816 kb on + strand, within Psyr_3916at 4659.816 kb on + strand, within Psyr_3916at 4659.816 kb on + strand, within Psyr_3916at 4659.817 kb on - strand, within Psyr_3916at 4659.817 kb on - strand, within Psyr_3916at 4659.966 kb on + strand, within Psyr_3916at 4659.967 kb on - strand, within Psyr_3916at 4660.095 kb on + strand, within Psyr_3916at 4660.095 kb on + strand, within Psyr_3916at 4660.096 kb on - strand, within Psyr_3916at 4660.133 kb on + strand, within Psyr_3916at 4660.133 kb on + strand, within Psyr_3916at 4660.133 kb on + strand, within Psyr_3916at 4660.133 kb on + strand, within Psyr_3916at 4660.134 kb on - strand, within Psyr_3916at 4660.134 kb on - strand, within Psyr_3916at 4660.157 kb on + strand, within Psyr_3916at 4660.158 kb on - strand, within Psyr_3916at 4660.158 kb on - strand, within Psyr_3916at 4660.336 kb on + strand, within Psyr_3916at 4660.337 kb on - strand, within Psyr_3916at 4660.407 kb on + strand, within Psyr_3916at 4660.446 kb on + strandat 4660.447 kb on - strandat 4660.549 kb on + strandat 4660.549 kb on + strandat 4660.549 kb on + strandat 4660.550 kb on - strandat 4660.550 kb on - strandat 4660.550 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Rifampicin 0.1 mg/ml
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4,657,778 + -0.1
4,657,848 - +1.6
4,657,869 - -1.6
4,657,910 - -0.6
4,657,910 - +0.7
4,657,910 - +0.1
4,657,940 + Psyr_3914 0.11 +0.4
4,657,941 - Psyr_3914 0.11 +0.1
4,657,941 - Psyr_3914 0.11 +0.1
4,657,941 - Psyr_3914 0.11 -0.5
4,658,024 + Psyr_3914 0.24 +0.1
4,658,024 + Psyr_3914 0.24 +0.8
4,658,132 + Psyr_3914 0.41 -1.4
4,658,132 + Psyr_3914 0.41 -0.0
4,658,133 - Psyr_3914 0.41 -0.3
4,658,133 - Psyr_3914 0.41 -2.0
4,658,133 - Psyr_3914 0.41 +0.2
4,658,219 + Psyr_3914 0.54 +0.7
4,658,219 + Psyr_3914 0.54 +0.1
4,658,219 + Psyr_3914 0.54 +0.3
4,658,219 + Psyr_3914 0.54 +0.3
4,658,219 + Psyr_3914 0.54 -0.9
4,658,219 + Psyr_3914 0.54 -0.1
4,658,220 - Psyr_3914 0.54 +0.3
4,658,220 - Psyr_3914 0.54 +0.8
4,658,220 - Psyr_3914 0.54 +0.8
4,658,220 - Psyr_3914 0.54 -0.5
4,658,220 - Psyr_3914 0.54 -0.2
4,658,220 - Psyr_3914 0.54 +0.4
4,658,220 - Psyr_3914 0.54 -0.9
4,658,220 - Psyr_3914 0.54 -2.1
4,658,224 - Psyr_3914 0.55 +0.9
4,658,289 + Psyr_3914 0.65 +2.0
4,658,289 + Psyr_3914 0.65 -1.8
4,658,289 + Psyr_3914 0.65 -1.4
4,658,289 + Psyr_3914 0.65 -0.9
4,658,290 - Psyr_3914 0.65 +0.0
4,658,290 - Psyr_3914 0.65 -0.8
4,658,318 + Psyr_3914 0.70 -0.1
4,658,530 + +0.2
4,658,548 + +2.7
4,658,549 - +0.2
4,658,549 - -2.2
4,658,584 - -0.7
4,658,584 - -0.1
4,659,040 + Psyr_3915 0.46 -1.0
4,659,040 + Psyr_3915 0.46 -1.8
4,659,041 - Psyr_3915 0.46 +0.9
4,659,223 - Psyr_3915 0.65 -0.2
4,659,223 - Psyr_3915 0.65 +0.3
4,659,252 + Psyr_3915 0.67 -0.6
4,659,448 + Psyr_3915 0.87 +0.3
4,659,448 + Psyr_3915 0.87 +1.1
4,659,448 + Psyr_3915 0.87 -1.3
4,659,456 + Psyr_3915 0.88 -0.6
4,659,491 + +1.3
4,659,491 + -0.3
4,659,491 + +0.0
4,659,492 - +0.7
4,659,602 + -0.3
4,659,692 - +0.8
4,659,694 + -0.0
4,659,694 + +1.3
4,659,694 + +0.1
4,659,694 + +1.0
4,659,694 + +0.0
4,659,694 + +1.1
4,659,694 + -0.5
4,659,694 + +0.9
4,659,694 + -0.3
4,659,694 + -0.7
4,659,695 - +0.7
4,659,695 - +0.0
4,659,695 - +1.6
4,659,695 - +0.7
4,659,695 - -1.0
4,659,695 - +0.6
4,659,695 - -2.5
4,659,695 - +3.0
4,659,695 - -0.3
4,659,695 - -0.1
4,659,700 - +1.3
4,659,700 - +0.2
4,659,787 + Psyr_3916 0.11 +1.0
4,659,788 - Psyr_3916 0.11 -0.4
4,659,816 + Psyr_3916 0.15 +0.8
4,659,816 + Psyr_3916 0.15 +0.5
4,659,816 + Psyr_3916 0.15 +4.4
4,659,816 + Psyr_3916 0.15 -0.1
4,659,817 - Psyr_3916 0.15 -0.2
4,659,817 - Psyr_3916 0.15 +0.9
4,659,966 + Psyr_3916 0.34 -0.3
4,659,967 - Psyr_3916 0.34 +0.1
4,660,095 + Psyr_3916 0.50 -0.3
4,660,095 + Psyr_3916 0.50 +0.8
4,660,096 - Psyr_3916 0.50 +0.3
4,660,133 + Psyr_3916 0.55 +0.2
4,660,133 + Psyr_3916 0.55 -0.7
4,660,133 + Psyr_3916 0.55 -0.8
4,660,133 + Psyr_3916 0.55 +1.3
4,660,134 - Psyr_3916 0.55 +0.1
4,660,134 - Psyr_3916 0.55 -0.4
4,660,157 + Psyr_3916 0.58 -0.5
4,660,158 - Psyr_3916 0.58 +0.4
4,660,158 - Psyr_3916 0.58 +0.6
4,660,336 + Psyr_3916 0.80 -0.3
4,660,337 - Psyr_3916 0.80 -2.3
4,660,407 + Psyr_3916 0.89 -0.7
4,660,446 + +0.3
4,660,447 - -1.5
4,660,549 + +0.3
4,660,549 + +1.5
4,660,549 + -0.3
4,660,550 - +0.4
4,660,550 - +0.4
4,660,550 - +0.7

Or see this region's nucleotide sequence