Experiment: KB with Rifampicin 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3834 and Psyr_3835 are separated by 68 nucleotides Psyr_3835 and Psyr_3836 are separated by 125 nucleotides
Psyr_3834: Psyr_3834 - AMP-dependent synthetase and ligase, at 4,569,836 to 4,571,527
_3834
Psyr_3835: Psyr_3835 - hypothetical protein, at 4,571,596 to 4,571,757
_3835
Psyr_3836: Psyr_3836 - AMP-dependent synthetase and ligase, at 4,571,883 to 4,573,571
_3836
Position (kb) 4571
4572 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 4570.606 kb on + strand, within Psyr_3834 at 4570.606 kb on + strand, within Psyr_3834 at 4570.606 kb on + strand, within Psyr_3834 at 4570.737 kb on + strand, within Psyr_3834 at 4570.737 kb on + strand, within Psyr_3834 at 4570.738 kb on - strand, within Psyr_3834 at 4570.738 kb on - strand, within Psyr_3834 at 4570.746 kb on + strand, within Psyr_3834 at 4570.746 kb on + strand, within Psyr_3834 at 4570.746 kb on + strand, within Psyr_3834 at 4570.747 kb on - strand, within Psyr_3834 at 4570.887 kb on + strand, within Psyr_3834 at 4571.016 kb on + strand, within Psyr_3834 at 4571.016 kb on + strand, within Psyr_3834 at 4571.016 kb on + strand, within Psyr_3834 at 4571.016 kb on + strand, within Psyr_3834 at 4571.017 kb on - strand, within Psyr_3834 at 4571.017 kb on - strand, within Psyr_3834 at 4571.017 kb on - strand, within Psyr_3834 at 4571.203 kb on - strand, within Psyr_3834 at 4571.203 kb on - strand, within Psyr_3834 at 4571.203 kb on - strand, within Psyr_3834 at 4571.273 kb on + strand, within Psyr_3834 at 4571.273 kb on + strand, within Psyr_3834 at 4571.273 kb on + strand, within Psyr_3834 at 4571.273 kb on + strand, within Psyr_3834 at 4571.273 kb on + strand, within Psyr_3834 at 4571.274 kb on - strand, within Psyr_3834 at 4571.274 kb on - strand, within Psyr_3834 at 4571.274 kb on - strand, within Psyr_3834 at 4571.320 kb on + strand, within Psyr_3834 at 4571.320 kb on + strand, within Psyr_3834 at 4571.321 kb on - strand, within Psyr_3834 at 4571.321 kb on - strand, within Psyr_3834 at 4571.361 kb on + strand at 4571.361 kb on + strand at 4571.361 kb on + strand at 4571.362 kb on - strand at 4571.362 kb on - strand at 4571.373 kb on + strand at 4571.373 kb on + strand at 4571.373 kb on + strand at 4571.373 kb on + strand at 4571.374 kb on - strand at 4571.374 kb on - strand at 4571.374 kb on - strand at 4571.519 kb on - strand at 4571.519 kb on - strand at 4571.597 kb on + strand at 4571.597 kb on + strand at 4571.598 kb on - strand at 4571.598 kb on - strand at 4571.604 kb on + strand at 4571.622 kb on + strand, within Psyr_3835 at 4571.623 kb on - strand, within Psyr_3835 at 4571.650 kb on + strand, within Psyr_3835 at 4571.744 kb on - strand at 4571.798 kb on + strand at 4571.858 kb on + strand at 4571.859 kb on - strand at 4572.089 kb on + strand, within Psyr_3836 at 4572.428 kb on + strand, within Psyr_3836
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Rifampicin 0.1 mg/ml remove 4,570,606 + Psyr_3834 0.46 +0.1 4,570,606 + Psyr_3834 0.46 +0.0 4,570,606 + Psyr_3834 0.46 +1.3 4,570,737 + Psyr_3834 0.53 -1.2 4,570,737 + Psyr_3834 0.53 +1.0 4,570,738 - Psyr_3834 0.53 +0.2 4,570,738 - Psyr_3834 0.53 +1.1 4,570,746 + Psyr_3834 0.54 +0.5 4,570,746 + Psyr_3834 0.54 -0.3 4,570,746 + Psyr_3834 0.54 +0.4 4,570,747 - Psyr_3834 0.54 -0.4 4,570,887 + Psyr_3834 0.62 -0.5 4,571,016 + Psyr_3834 0.70 -0.5 4,571,016 + Psyr_3834 0.70 -0.4 4,571,016 + Psyr_3834 0.70 -0.4 4,571,016 + Psyr_3834 0.70 +1.6 4,571,017 - Psyr_3834 0.70 -0.6 4,571,017 - Psyr_3834 0.70 +3.8 4,571,017 - Psyr_3834 0.70 -1.2 4,571,203 - Psyr_3834 0.81 +0.2 4,571,203 - Psyr_3834 0.81 +0.9 4,571,203 - Psyr_3834 0.81 -1.1 4,571,273 + Psyr_3834 0.85 -0.0 4,571,273 + Psyr_3834 0.85 +0.4 4,571,273 + Psyr_3834 0.85 -0.2 4,571,273 + Psyr_3834 0.85 -1.0 4,571,273 + Psyr_3834 0.85 -0.6 4,571,274 - Psyr_3834 0.85 +0.1 4,571,274 - Psyr_3834 0.85 -0.4 4,571,274 - Psyr_3834 0.85 -0.5 4,571,320 + Psyr_3834 0.88 -1.4 4,571,320 + Psyr_3834 0.88 +0.4 4,571,321 - Psyr_3834 0.88 +1.0 4,571,321 - Psyr_3834 0.88 -0.4 4,571,361 + -1.2 4,571,361 + +0.2 4,571,361 + +1.6 4,571,362 - -1.2 4,571,362 - -0.2 4,571,373 + -1.5 4,571,373 + -1.4 4,571,373 + -0.2 4,571,373 + -0.3 4,571,374 - -0.1 4,571,374 - -0.1 4,571,374 - -1.5 4,571,519 - +0.8 4,571,519 - -0.5 4,571,597 + -1.0 4,571,597 + +0.5 4,571,598 - +0.1 4,571,598 - -1.5 4,571,604 + +0.0 4,571,622 + Psyr_3835 0.16 -0.1 4,571,623 - Psyr_3835 0.17 -0.7 4,571,650 + Psyr_3835 0.33 -1.3 4,571,744 - +0.6 4,571,798 + +1.1 4,571,858 + +0.4 4,571,859 - +2.1 4,572,089 + Psyr_3836 0.12 -0.5 4,572,428 + Psyr_3836 0.32 -0.1
Or see this region's nucleotide sequence