Experiment: KB with Rifampicin 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3699 and Psyr_3700 overlap by 4 nucleotides Psyr_3700 and Psyr_3701 are separated by 170 nucleotides Psyr_3701 and Psyr_3702 are separated by 128 nucleotides Psyr_3702 and Psyr_3703 overlap by 4 nucleotides
Psyr_3699: Psyr_3699 - conserved hypothetical protein, at 4,388,384 to 4,388,821
_3699
Psyr_3700: Psyr_3700 - Protein of unknown function DUF306, at 4,388,818 to 4,389,225
_3700
Psyr_3701: Psyr_3701 - thioredoxin, putative, at 4,389,396 to 4,389,863
_3701
Psyr_3702: Psyr_3702 - Arsenate reductase, at 4,389,992 to 4,390,345
_3702
Psyr_3703: Psyr_3703 - Flavodoxin/nitric oxide synthase, at 4,390,342 to 4,390,947
_3703
Position (kb) 4389
4390 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4388.612 kb on - strand, within Psyr_3699 at 4388.700 kb on + strand, within Psyr_3699 at 4388.871 kb on + strand, within Psyr_3700 at 4388.871 kb on + strand, within Psyr_3700 at 4388.871 kb on + strand, within Psyr_3700 at 4388.871 kb on + strand, within Psyr_3700 at 4388.872 kb on - strand, within Psyr_3700 at 4388.908 kb on + strand, within Psyr_3700 at 4388.908 kb on + strand, within Psyr_3700 at 4388.908 kb on + strand, within Psyr_3700 at 4388.908 kb on + strand, within Psyr_3700 at 4388.908 kb on + strand, within Psyr_3700 at 4388.908 kb on + strand, within Psyr_3700 at 4388.908 kb on + strand, within Psyr_3700 at 4388.908 kb on + strand, within Psyr_3700 at 4388.908 kb on + strand, within Psyr_3700 at 4388.908 kb on + strand, within Psyr_3700 at 4388.908 kb on + strand, within Psyr_3700 at 4388.908 kb on + strand, within Psyr_3700 at 4388.908 kb on + strand, within Psyr_3700 at 4388.908 kb on + strand, within Psyr_3700 at 4388.908 kb on + strand, within Psyr_3700 at 4388.909 kb on - strand, within Psyr_3700 at 4388.909 kb on - strand, within Psyr_3700 at 4388.909 kb on - strand, within Psyr_3700 at 4388.909 kb on - strand, within Psyr_3700 at 4388.909 kb on - strand, within Psyr_3700 at 4388.909 kb on - strand, within Psyr_3700 at 4388.909 kb on - strand, within Psyr_3700 at 4388.909 kb on - strand, within Psyr_3700 at 4388.909 kb on - strand, within Psyr_3700 at 4388.909 kb on - strand, within Psyr_3700 at 4388.909 kb on - strand, within Psyr_3700 at 4388.909 kb on - strand, within Psyr_3700 at 4388.912 kb on + strand, within Psyr_3700 at 4388.912 kb on + strand, within Psyr_3700 at 4388.913 kb on - strand, within Psyr_3700 at 4389.027 kb on + strand, within Psyr_3700 at 4389.027 kb on + strand, within Psyr_3700 at 4389.118 kb on - strand, within Psyr_3700 at 4389.118 kb on - strand, within Psyr_3700 at 4389.150 kb on + strand, within Psyr_3700 at 4389.219 kb on + strand at 4389.219 kb on + strand at 4389.220 kb on - strand at 4389.220 kb on - strand at 4389.229 kb on + strand at 4389.229 kb on + strand at 4389.229 kb on + strand at 4389.229 kb on + strand at 4389.230 kb on - strand at 4389.230 kb on - strand at 4389.230 kb on - strand at 4389.233 kb on + strand at 4389.233 kb on + strand at 4389.234 kb on - strand at 4389.234 kb on - strand at 4389.254 kb on - strand at 4389.254 kb on - strand at 4389.370 kb on - strand at 4389.496 kb on + strand, within Psyr_3701 at 4389.497 kb on - strand, within Psyr_3701 at 4389.497 kb on - strand, within Psyr_3701 at 4389.497 kb on - strand, within Psyr_3701 at 4389.497 kb on - strand, within Psyr_3701 at 4389.533 kb on - strand, within Psyr_3701 at 4389.725 kb on - strand, within Psyr_3701 at 4389.897 kb on + strand at 4389.897 kb on + strand at 4389.897 kb on + strand at 4389.897 kb on + strand at 4389.897 kb on + strand at 4389.897 kb on + strand at 4389.897 kb on + strand at 4389.898 kb on - strand at 4389.898 kb on - strand at 4389.898 kb on - strand at 4389.898 kb on - strand at 4389.898 kb on - strand at 4389.898 kb on - strand at 4389.901 kb on + strand at 4389.901 kb on + strand at 4389.901 kb on + strand at 4389.901 kb on + strand at 4389.901 kb on + strand at 4389.901 kb on + strand at 4389.901 kb on + strand at 4389.902 kb on - strand at 4389.902 kb on - strand at 4389.904 kb on - strand at 4389.918 kb on + strand at 4389.933 kb on - strand at 4389.957 kb on + strand at 4389.962 kb on + strand at 4389.962 kb on + strand at 4390.010 kb on + strand at 4390.187 kb on + strand, within Psyr_3702 at 4390.187 kb on + strand, within Psyr_3702 at 4390.187 kb on + strand, within Psyr_3702 at 4390.188 kb on - strand, within Psyr_3702 at 4390.354 kb on + strand at 4390.354 kb on + strand at 4390.354 kb on + strand at 4390.354 kb on + strand at 4390.354 kb on + strand at 4390.354 kb on + strand at 4390.354 kb on + strand at 4390.354 kb on + strand at 4390.354 kb on + strand at 4390.355 kb on - strand at 4390.355 kb on - strand at 4390.355 kb on - strand at 4390.355 kb on - strand at 4390.355 kb on - strand at 4390.369 kb on + strand at 4390.369 kb on + strand at 4390.370 kb on - strand at 4390.370 kb on - strand at 4390.372 kb on + strand at 4390.373 kb on - strand at 4390.522 kb on + strand, within Psyr_3703 at 4390.609 kb on + strand, within Psyr_3703 at 4390.609 kb on + strand, within Psyr_3703 at 4390.609 kb on + strand, within Psyr_3703 at 4390.610 kb on - strand, within Psyr_3703 at 4390.610 kb on - strand, within Psyr_3703 at 4390.610 kb on - strand, within Psyr_3703 at 4390.677 kb on + strand, within Psyr_3703
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Rifampicin 0.1 mg/ml remove 4,388,612 - Psyr_3699 0.52 +0.4 4,388,700 + Psyr_3699 0.72 +1.9 4,388,871 + Psyr_3700 0.13 +0.2 4,388,871 + Psyr_3700 0.13 +0.2 4,388,871 + Psyr_3700 0.13 -0.5 4,388,871 + Psyr_3700 0.13 +0.9 4,388,872 - Psyr_3700 0.13 -0.8 4,388,908 + Psyr_3700 0.22 -0.7 4,388,908 + Psyr_3700 0.22 +0.4 4,388,908 + Psyr_3700 0.22 +1.3 4,388,908 + Psyr_3700 0.22 +1.2 4,388,908 + Psyr_3700 0.22 +0.2 4,388,908 + Psyr_3700 0.22 +0.6 4,388,908 + Psyr_3700 0.22 -0.5 4,388,908 + Psyr_3700 0.22 +1.1 4,388,908 + Psyr_3700 0.22 -0.7 4,388,908 + Psyr_3700 0.22 +0.4 4,388,908 + Psyr_3700 0.22 -0.4 4,388,908 + Psyr_3700 0.22 +0.8 4,388,908 + Psyr_3700 0.22 -1.9 4,388,908 + Psyr_3700 0.22 +0.8 4,388,908 + Psyr_3700 0.22 +0.9 4,388,909 - Psyr_3700 0.22 +0.5 4,388,909 - Psyr_3700 0.22 -0.8 4,388,909 - Psyr_3700 0.22 -1.1 4,388,909 - Psyr_3700 0.22 +0.3 4,388,909 - Psyr_3700 0.22 +0.5 4,388,909 - Psyr_3700 0.22 +0.2 4,388,909 - Psyr_3700 0.22 +2.2 4,388,909 - Psyr_3700 0.22 -0.6 4,388,909 - Psyr_3700 0.22 -0.2 4,388,909 - Psyr_3700 0.22 -0.6 4,388,909 - Psyr_3700 0.22 +0.6 4,388,909 - Psyr_3700 0.22 -1.0 4,388,912 + Psyr_3700 0.23 +0.3 4,388,912 + Psyr_3700 0.23 +2.2 4,388,913 - Psyr_3700 0.23 +0.3 4,389,027 + Psyr_3700 0.51 +0.1 4,389,027 + Psyr_3700 0.51 -0.4 4,389,118 - Psyr_3700 0.74 -0.7 4,389,118 - Psyr_3700 0.74 +0.1 4,389,150 + Psyr_3700 0.81 -0.8 4,389,219 + +0.5 4,389,219 + +0.1 4,389,220 - +1.9 4,389,220 - +0.5 4,389,229 + +0.7 4,389,229 + +1.2 4,389,229 + -0.8 4,389,229 + +1.5 4,389,230 - +0.2 4,389,230 - +0.4 4,389,230 - -1.4 4,389,233 + -0.4 4,389,233 + -0.1 4,389,234 - +0.1 4,389,234 - -0.2 4,389,254 - +0.5 4,389,254 - +0.2 4,389,370 - +0.3 4,389,496 + Psyr_3701 0.21 -1.7 4,389,497 - Psyr_3701 0.22 -1.4 4,389,497 - Psyr_3701 0.22 -1.1 4,389,497 - Psyr_3701 0.22 -2.3 4,389,497 - Psyr_3701 0.22 -0.8 4,389,533 - Psyr_3701 0.29 -1.0 4,389,725 - Psyr_3701 0.70 -0.1 4,389,897 + -0.5 4,389,897 + -0.3 4,389,897 + -0.2 4,389,897 + +1.0 4,389,897 + +1.8 4,389,897 + -0.2 4,389,897 + +1.1 4,389,898 - +0.3 4,389,898 - +0.6 4,389,898 - +1.6 4,389,898 - +0.6 4,389,898 - +0.4 4,389,898 - -0.1 4,389,901 + -1.0 4,389,901 + -0.9 4,389,901 + +0.7 4,389,901 + +1.6 4,389,901 + -0.6 4,389,901 + +0.8 4,389,901 + -0.2 4,389,902 - +0.9 4,389,902 - +0.4 4,389,904 - -1.0 4,389,918 + +0.8 4,389,933 - -0.1 4,389,957 + -0.5 4,389,962 + -0.7 4,389,962 + -0.1 4,390,010 + -0.6 4,390,187 + Psyr_3702 0.55 +0.4 4,390,187 + Psyr_3702 0.55 -0.9 4,390,187 + Psyr_3702 0.55 -0.7 4,390,188 - Psyr_3702 0.55 +1.0 4,390,354 + +0.3 4,390,354 + -0.4 4,390,354 + -0.3 4,390,354 + -0.1 4,390,354 + +0.3 4,390,354 + -0.1 4,390,354 + -1.2 4,390,354 + -0.2 4,390,354 + +0.3 4,390,355 - -0.1 4,390,355 - +0.2 4,390,355 - +0.9 4,390,355 - -1.8 4,390,355 - +0.4 4,390,369 + -0.1 4,390,369 + +1.2 4,390,370 - +0.2 4,390,370 - +0.8 4,390,372 + +0.1 4,390,373 - -0.6 4,390,522 + Psyr_3703 0.30 +0.0 4,390,609 + Psyr_3703 0.44 -0.4 4,390,609 + Psyr_3703 0.44 -0.2 4,390,609 + Psyr_3703 0.44 -0.1 4,390,610 - Psyr_3703 0.44 +0.4 4,390,610 - Psyr_3703 0.44 -0.3 4,390,610 - Psyr_3703 0.44 +1.6 4,390,677 + Psyr_3703 0.55 +0.1
Or see this region's nucleotide sequence