Experiment: KB with Rifampicin 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3622 and Psyr_3623 are separated by 27 nucleotides Psyr_3623 and Psyr_3624 are separated by 58 nucleotides Psyr_3624 and Psyr_3625 overlap by 11 nucleotides Psyr_3625 and Psyr_3626 are separated by 204 nucleotides
Psyr_3622: Psyr_3622 - 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase, at 4,306,098 to 4,307,444
_3622
Psyr_3623: Psyr_3623 - Protein of unknown function DUF1127, at 4,307,472 to 4,307,705
_3623
Psyr_3624: Psyr_3624 - transcriptional regulator, LysR family, at 4,307,764 to 4,308,654
_3624
Psyr_3625: Psyr_3625 - Protein of unknown function DUF81, at 4,308,644 to 4,309,375
_3625
Psyr_3626: Psyr_3626 - transcriptional regulator, MarR family, at 4,309,580 to 4,310,053
_3626
Position (kb) 4307
4308
4309 Strain fitness (log2 ratio) -1
0
1
2
3 at 4306.816 kb on - strand, within Psyr_3622 at 4306.832 kb on - strand, within Psyr_3622 at 4306.832 kb on - strand, within Psyr_3622 at 4306.857 kb on + strand, within Psyr_3622 at 4306.860 kb on + strand, within Psyr_3622 at 4306.861 kb on - strand, within Psyr_3622 at 4306.861 kb on - strand, within Psyr_3622 at 4307.182 kb on - strand, within Psyr_3622 at 4307.256 kb on + strand, within Psyr_3622 at 4307.256 kb on + strand, within Psyr_3622 at 4307.257 kb on - strand, within Psyr_3622 at 4307.257 kb on - strand, within Psyr_3622 at 4307.257 kb on - strand, within Psyr_3622 at 4307.674 kb on - strand, within Psyr_3623 at 4307.748 kb on - strand at 4307.798 kb on + strand at 4307.809 kb on + strand at 4308.008 kb on + strand, within Psyr_3624 at 4308.009 kb on - strand, within Psyr_3624 at 4308.115 kb on + strand, within Psyr_3624 at 4308.115 kb on + strand, within Psyr_3624 at 4308.115 kb on + strand, within Psyr_3624 at 4308.116 kb on - strand, within Psyr_3624 at 4308.116 kb on - strand, within Psyr_3624 at 4308.116 kb on - strand, within Psyr_3624 at 4308.431 kb on - strand, within Psyr_3624 at 4308.628 kb on + strand at 4308.816 kb on + strand, within Psyr_3625 at 4308.816 kb on + strand, within Psyr_3625 at 4308.816 kb on + strand, within Psyr_3625 at 4308.816 kb on + strand, within Psyr_3625 at 4308.816 kb on + strand, within Psyr_3625 at 4308.817 kb on - strand, within Psyr_3625 at 4308.817 kb on - strand, within Psyr_3625 at 4309.032 kb on + strand, within Psyr_3625 at 4309.032 kb on + strand, within Psyr_3625 at 4309.032 kb on + strand, within Psyr_3625 at 4309.032 kb on + strand, within Psyr_3625 at 4309.033 kb on - strand, within Psyr_3625 at 4309.033 kb on - strand, within Psyr_3625 at 4309.033 kb on - strand, within Psyr_3625 at 4309.033 kb on - strand, within Psyr_3625 at 4309.174 kb on + strand, within Psyr_3625 at 4309.203 kb on + strand, within Psyr_3625 at 4309.423 kb on + strand at 4309.517 kb on - strand at 4309.517 kb on - strand at 4309.543 kb on + strand at 4309.543 kb on + strand at 4309.543 kb on + strand at 4309.544 kb on - strand at 4309.544 kb on - strand at 4309.544 kb on - strand at 4309.548 kb on + strand at 4309.549 kb on - strand at 4309.579 kb on + strand at 4309.580 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Rifampicin 0.1 mg/ml remove 4,306,816 - Psyr_3622 0.53 -0.0 4,306,832 - Psyr_3622 0.54 +0.7 4,306,832 - Psyr_3622 0.54 +0.4 4,306,857 + Psyr_3622 0.56 -0.4 4,306,860 + Psyr_3622 0.57 +1.0 4,306,861 - Psyr_3622 0.57 -0.5 4,306,861 - Psyr_3622 0.57 -0.8 4,307,182 - Psyr_3622 0.80 +0.3 4,307,256 + Psyr_3622 0.86 -1.2 4,307,256 + Psyr_3622 0.86 +0.3 4,307,257 - Psyr_3622 0.86 +0.1 4,307,257 - Psyr_3622 0.86 -0.1 4,307,257 - Psyr_3622 0.86 +0.3 4,307,674 - Psyr_3623 0.86 +0.5 4,307,748 - +0.9 4,307,798 + +1.8 4,307,809 + +0.7 4,308,008 + Psyr_3624 0.27 +0.7 4,308,009 - Psyr_3624 0.27 +1.0 4,308,115 + Psyr_3624 0.39 +0.3 4,308,115 + Psyr_3624 0.39 +2.9 4,308,115 + Psyr_3624 0.39 +0.7 4,308,116 - Psyr_3624 0.40 +0.6 4,308,116 - Psyr_3624 0.40 +2.0 4,308,116 - Psyr_3624 0.40 +0.8 4,308,431 - Psyr_3624 0.75 +0.6 4,308,628 + -0.5 4,308,816 + Psyr_3625 0.23 -0.5 4,308,816 + Psyr_3625 0.23 -0.9 4,308,816 + Psyr_3625 0.23 +0.8 4,308,816 + Psyr_3625 0.23 +1.2 4,308,816 + Psyr_3625 0.23 +1.9 4,308,817 - Psyr_3625 0.24 -0.0 4,308,817 - Psyr_3625 0.24 +0.1 4,309,032 + Psyr_3625 0.53 +0.3 4,309,032 + Psyr_3625 0.53 -1.3 4,309,032 + Psyr_3625 0.53 -0.1 4,309,032 + Psyr_3625 0.53 -0.0 4,309,033 - Psyr_3625 0.53 +0.8 4,309,033 - Psyr_3625 0.53 +0.9 4,309,033 - Psyr_3625 0.53 -0.4 4,309,033 - Psyr_3625 0.53 +2.0 4,309,174 + Psyr_3625 0.72 -1.7 4,309,203 + Psyr_3625 0.76 -1.0 4,309,423 + +0.8 4,309,517 - +0.6 4,309,517 - +0.2 4,309,543 + +0.6 4,309,543 + -0.0 4,309,543 + +0.8 4,309,544 - +0.1 4,309,544 - +0.2 4,309,544 - -1.0 4,309,548 + -0.4 4,309,549 - -0.4 4,309,579 + -1.3 4,309,580 - +0.9
Or see this region's nucleotide sequence