Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3602

Experiment: KB with Rifampicin 0.1 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_3600 and Psyr_3601 are separated by 138 nucleotidesPsyr_3601 and Psyr_3602 overlap by 4 nucleotidesPsyr_3602 and Psyr_3603 are separated by 224 nucleotides Psyr_3600: Psyr_3600 - transcriptional regulator, LysR family, at 4,281,346 to 4,282,314 _3600 Psyr_3601: Psyr_3601 - conserved hypothetical protein, at 4,282,453 to 4,283,064 _3601 Psyr_3602: Psyr_3602 - Rhodanese-like protein, at 4,283,061 to 4,284,644 _3602 Psyr_3603: Psyr_3603 - ABC transporter, substrate-binding protein, aliphatic sulfonate, at 4,284,869 to 4,285,858 _3603 Position (kb) 4283 4284 4285Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4282.098 kb on + strand, within Psyr_3600at 4282.236 kb on + strandat 4282.237 kb on - strandat 4282.277 kb on - strandat 4282.295 kb on + strandat 4282.316 kb on - strandat 4282.357 kb on - strandat 4282.357 kb on - strandat 4282.401 kb on + strandat 4282.619 kb on + strand, within Psyr_3601at 4282.969 kb on + strand, within Psyr_3601at 4283.260 kb on - strand, within Psyr_3602at 4283.518 kb on - strand, within Psyr_3602at 4283.904 kb on + strand, within Psyr_3602at 4283.904 kb on + strand, within Psyr_3602at 4283.904 kb on + strand, within Psyr_3602at 4283.905 kb on - strand, within Psyr_3602at 4283.905 kb on - strand, within Psyr_3602at 4283.905 kb on - strand, within Psyr_3602at 4283.905 kb on - strand, within Psyr_3602at 4283.905 kb on - strand, within Psyr_3602at 4283.917 kb on + strand, within Psyr_3602at 4283.918 kb on - strand, within Psyr_3602at 4283.918 kb on - strand, within Psyr_3602at 4283.918 kb on - strand, within Psyr_3602at 4284.226 kb on + strand, within Psyr_3602at 4284.227 kb on - strand, within Psyr_3602at 4284.227 kb on - strand, within Psyr_3602at 4284.264 kb on + strand, within Psyr_3602at 4284.264 kb on + strand, within Psyr_3602at 4284.264 kb on + strand, within Psyr_3602at 4284.264 kb on + strand, within Psyr_3602at 4284.264 kb on + strand, within Psyr_3602at 4284.265 kb on - strand, within Psyr_3602at 4284.265 kb on - strand, within Psyr_3602at 4284.265 kb on - strand, within Psyr_3602at 4284.265 kb on - strand, within Psyr_3602at 4284.265 kb on - strand, within Psyr_3602at 4284.265 kb on - strand, within Psyr_3602at 4284.265 kb on - strand, within Psyr_3602at 4284.278 kb on + strand, within Psyr_3602at 4284.278 kb on + strand, within Psyr_3602at 4284.278 kb on + strand, within Psyr_3602at 4284.279 kb on - strand, within Psyr_3602at 4284.352 kb on - strand, within Psyr_3602at 4284.534 kb on + strandat 4284.573 kb on + strandat 4284.574 kb on - strandat 4284.634 kb on - strandat 4284.655 kb on + strandat 4284.655 kb on + strandat 4284.794 kb on + strandat 4284.795 kb on - strandat 4284.795 kb on - strandat 4284.839 kb on + strandat 4284.839 kb on + strandat 4284.840 kb on - strandat 4284.852 kb on - strandat 4284.866 kb on + strandat 4284.866 kb on + strandat 4284.866 kb on + strandat 4284.866 kb on + strandat 4284.866 kb on + strandat 4284.867 kb on - strandat 4284.867 kb on - strandat 4284.867 kb on - strandat 4284.867 kb on - strandat 4284.867 kb on - strandat 4284.867 kb on - strandat 4284.867 kb on - strandat 4284.867 kb on - strandat 4284.867 kb on - strandat 4284.867 kb on - strandat 4285.142 kb on + strand, within Psyr_3603at 4285.142 kb on + strand, within Psyr_3603at 4285.142 kb on + strand, within Psyr_3603at 4285.142 kb on + strand, within Psyr_3603at 4285.142 kb on + strand, within Psyr_3603at 4285.142 kb on + strand, within Psyr_3603at 4285.142 kb on + strand, within Psyr_3603at 4285.143 kb on - strand, within Psyr_3603at 4285.143 kb on - strand, within Psyr_3603at 4285.143 kb on - strand, within Psyr_3603at 4285.143 kb on - strand, within Psyr_3603at 4285.143 kb on - strand, within Psyr_3603at 4285.143 kb on - strand, within Psyr_3603at 4285.367 kb on + strand, within Psyr_3603at 4285.367 kb on + strand, within Psyr_3603at 4285.367 kb on + strand, within Psyr_3603at 4285.368 kb on - strand, within Psyr_3603at 4285.368 kb on - strand, within Psyr_3603at 4285.368 kb on - strand, within Psyr_3603at 4285.440 kb on - strand, within Psyr_3603at 4285.476 kb on + strand, within Psyr_3603at 4285.622 kb on + strand, within Psyr_3603at 4285.622 kb on + strand, within Psyr_3603at 4285.622 kb on + strand, within Psyr_3603at 4285.623 kb on - strand, within Psyr_3603at 4285.623 kb on - strand, within Psyr_3603

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Rifampicin 0.1 mg/ml
remove
4,282,098 + Psyr_3600 0.78 +1.1
4,282,236 + -0.5
4,282,237 - -0.0
4,282,277 - +1.5
4,282,295 + +0.8
4,282,316 - +0.5
4,282,357 - -1.3
4,282,357 - -0.3
4,282,401 + -1.0
4,282,619 + Psyr_3601 0.27 -1.0
4,282,969 + Psyr_3601 0.84 -0.1
4,283,260 - Psyr_3602 0.13 -0.0
4,283,518 - Psyr_3602 0.29 +0.4
4,283,904 + Psyr_3602 0.53 -0.2
4,283,904 + Psyr_3602 0.53 +0.5
4,283,904 + Psyr_3602 0.53 +0.8
4,283,905 - Psyr_3602 0.53 +0.4
4,283,905 - Psyr_3602 0.53 -0.6
4,283,905 - Psyr_3602 0.53 +1.0
4,283,905 - Psyr_3602 0.53 +0.8
4,283,905 - Psyr_3602 0.53 +0.1
4,283,917 + Psyr_3602 0.54 +1.4
4,283,918 - Psyr_3602 0.54 -0.4
4,283,918 - Psyr_3602 0.54 +1.7
4,283,918 - Psyr_3602 0.54 -0.3
4,284,226 + Psyr_3602 0.74 +0.2
4,284,227 - Psyr_3602 0.74 +0.1
4,284,227 - Psyr_3602 0.74 +0.4
4,284,264 + Psyr_3602 0.76 -0.5
4,284,264 + Psyr_3602 0.76 +1.8
4,284,264 + Psyr_3602 0.76 +0.2
4,284,264 + Psyr_3602 0.76 -0.7
4,284,264 + Psyr_3602 0.76 +0.4
4,284,265 - Psyr_3602 0.76 -0.7
4,284,265 - Psyr_3602 0.76 -0.7
4,284,265 - Psyr_3602 0.76 -0.4
4,284,265 - Psyr_3602 0.76 +0.3
4,284,265 - Psyr_3602 0.76 -0.7
4,284,265 - Psyr_3602 0.76 +3.1
4,284,265 - Psyr_3602 0.76 +0.3
4,284,278 + Psyr_3602 0.77 +0.7
4,284,278 + Psyr_3602 0.77 -0.0
4,284,278 + Psyr_3602 0.77 -0.5
4,284,279 - Psyr_3602 0.77 +0.5
4,284,352 - Psyr_3602 0.82 +0.8
4,284,534 + -1.2
4,284,573 + -0.5
4,284,574 - +0.3
4,284,634 - -0.2
4,284,655 + -0.0
4,284,655 + -0.0
4,284,794 + -0.3
4,284,795 - -1.0
4,284,795 - -0.3
4,284,839 + +1.2
4,284,839 + -0.2
4,284,840 - -0.4
4,284,852 - +3.5
4,284,866 + +0.7
4,284,866 + -1.0
4,284,866 + -0.4
4,284,866 + +0.5
4,284,866 + +0.8
4,284,867 - -1.0
4,284,867 - +2.0
4,284,867 - +1.1
4,284,867 - +0.3
4,284,867 - +0.4
4,284,867 - -1.0
4,284,867 - +1.0
4,284,867 - +0.3
4,284,867 - -3.0
4,284,867 - +1.5
4,285,142 + Psyr_3603 0.28 +1.1
4,285,142 + Psyr_3603 0.28 -0.3
4,285,142 + Psyr_3603 0.28 -0.9
4,285,142 + Psyr_3603 0.28 +1.2
4,285,142 + Psyr_3603 0.28 +0.0
4,285,142 + Psyr_3603 0.28 +0.5
4,285,142 + Psyr_3603 0.28 +1.0
4,285,143 - Psyr_3603 0.28 +0.3
4,285,143 - Psyr_3603 0.28 +1.5
4,285,143 - Psyr_3603 0.28 -1.0
4,285,143 - Psyr_3603 0.28 +1.1
4,285,143 - Psyr_3603 0.28 +1.1
4,285,143 - Psyr_3603 0.28 -0.1
4,285,367 + Psyr_3603 0.50 -0.1
4,285,367 + Psyr_3603 0.50 +2.1
4,285,367 + Psyr_3603 0.50 -0.0
4,285,368 - Psyr_3603 0.50 +1.5
4,285,368 - Psyr_3603 0.50 -0.3
4,285,368 - Psyr_3603 0.50 +0.7
4,285,440 - Psyr_3603 0.58 -0.4
4,285,476 + Psyr_3603 0.61 -1.6
4,285,622 + Psyr_3603 0.76 +0.0
4,285,622 + Psyr_3603 0.76 -0.5
4,285,622 + Psyr_3603 0.76 +0.9
4,285,623 - Psyr_3603 0.76 +1.3
4,285,623 - Psyr_3603 0.76 -0.7

Or see this region's nucleotide sequence