Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3480

Experiment: KB with Rifampicin 0.1 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Rifampicin 0.1 mg/ml
4,150,815	+		Psyr_3478	0.89	-0.3
4,150,835	+				+0.5
4,150,836	-				-0.9
4,150,836	-				+0.4
4,150,836	-				+1.0
4,150,932	-				+0.2
4,150,989	+				-0.1
4,151,100	+		Psyr_3479	0.16	-0.1
4,151,101	-		Psyr_3479	0.16	+1.0
4,151,154	+		Psyr_3479	0.24	+0.0
4,151,154	+		Psyr_3479	0.24	+0.8
4,151,154	+		Psyr_3479	0.24	+0.2
4,151,155	-		Psyr_3479	0.24	+0.4
4,151,155	-		Psyr_3479	0.24	+0.0
4,151,155	-		Psyr_3479	0.24	+0.0
4,151,271	+		Psyr_3479	0.41	-0.9
4,151,272	-		Psyr_3479	0.41	-0.5
4,151,272	-		Psyr_3479	0.41	-0.4
4,151,419	-		Psyr_3479	0.62	-0.7
4,151,419	-		Psyr_3479	0.62	-0.3
4,151,419	-		Psyr_3479	0.62	+2.1
4,151,666	-				-0.3
4,151,691	+				-2.5
4,151,691	+				+0.5
4,151,692	-				-0.7
4,151,692	-				+0.2
4,151,820	+		Psyr_3480	0.29	-0.7
4,151,820	+		Psyr_3480	0.29	-0.9
4,151,823	+		Psyr_3480	0.29	-0.3
4,151,824	-		Psyr_3480	0.30	-1.3
4,151,824	-		Psyr_3480	0.30	-0.1
4,151,824	-		Psyr_3480	0.30	+0.9
4,151,824	-		Psyr_3480	0.30	-1.8
4,151,829	+		Psyr_3480	0.31	-0.6
4,151,829	+		Psyr_3480	0.31	+3.4
4,152,056	-		Psyr_3480	0.82	-1.5
4,152,138	+				+0.0
4,152,225	+		Psyr_3481	0.22	+0.6
4,152,225	+		Psyr_3481	0.22	-1.1
4,152,225	+		Psyr_3481	0.22	-1.9
4,152,225	+		Psyr_3481	0.22	-0.7
4,152,225	+		Psyr_3481	0.22	-0.9
4,152,226	-		Psyr_3481	0.22	+1.6
4,152,226	-		Psyr_3481	0.22	-0.8
4,152,291	+		Psyr_3481	0.38	+0.6
4,152,291	+		Psyr_3481	0.38	-2.0
4,152,292	-		Psyr_3481	0.38	-0.2
4,152,292	-		Psyr_3481	0.38	-0.4
4,152,292	-		Psyr_3481	0.38	+0.2
4,152,332	+		Psyr_3481	0.48	-0.1
4,152,512	+				-1.3
4,152,512	+				+0.2
4,152,512	+				-0.5
4,152,512	+				+0.2
4,152,512	+				-1.2
4,152,512	+				+1.0
4,152,512	+				-0.4
4,152,512	+				-0.7
4,152,512	+				+0.3
4,152,512	+				+0.1
4,152,512	+				-1.4
4,152,512	+				-0.7
4,152,512	+				+1.6
4,152,512	+				-1.8
4,152,512	+				+2.1
4,152,512	+				+1.6
4,152,512	+				+0.7
4,152,513	-				+1.0
4,152,513	-				+1.3
4,152,513	-				+0.2
4,152,513	-				-0.1
4,152,513	-				-0.7
4,152,513	-				+1.1
4,152,513	-				-0.2
4,152,513	-				+1.3
4,152,513	-				-0.9
4,152,513	-				+0.1
4,152,513	-				+2.1
4,152,513	-				-0.5
4,152,513	-				-0.4
4,152,513	-				+0.6
4,152,513	-				+0.6
4,152,884	+		Psyr_3482	0.13	+1.5
4,152,884	+		Psyr_3482	0.13	-0.3
4,152,885	-		Psyr_3482	0.13	+0.6
4,152,885	-		Psyr_3482	0.13	+1.1
4,152,980	+		Psyr_3482	0.33	+0.2
4,153,025	+		Psyr_3482	0.43	+0.9
4,153,093	-		Psyr_3482	0.57	-0.7