Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3345

Experiment: KB with Rifampicin 0.1 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Rifampicin 0.1 mg/ml
3,999,381	+		Psyr_3344	0.16	+0.6
3,999,382	-		Psyr_3344	0.16	-0.1
3,999,382	-		Psyr_3344	0.16	+1.6
3,999,460	+		Psyr_3344	0.25	-0.3
3,999,460	+		Psyr_3344	0.25	+1.5
3,999,460	+		Psyr_3344	0.25	+0.1
3,999,460	+		Psyr_3344	0.25	+0.9
3,999,460	+		Psyr_3344	0.25	+0.6
3,999,461	-		Psyr_3344	0.25	-0.3
3,999,461	-		Psyr_3344	0.25	+1.2
3,999,461	-		Psyr_3344	0.25	-1.6
3,999,461	-		Psyr_3344	0.25	-0.1
3,999,461	-		Psyr_3344	0.25	+2.1
3,999,599	+		Psyr_3344	0.40	-0.1
3,999,599	+		Psyr_3344	0.40	+0.6
3,999,599	+		Psyr_3344	0.40	-1.0
3,999,599	+		Psyr_3344	0.40	+0.5
3,999,599	+		Psyr_3344	0.40	+0.2
3,999,599	+		Psyr_3344	0.40	-0.9
3,999,599	+		Psyr_3344	0.40	+1.1
3,999,599	+		Psyr_3344	0.40	-0.5
3,999,599	+		Psyr_3344	0.40	+0.5
3,999,599	+		Psyr_3344	0.40	+1.5
3,999,599	+		Psyr_3344	0.40	-0.3
3,999,599	+		Psyr_3344	0.40	-0.6
3,999,600	-		Psyr_3344	0.40	-0.3
3,999,600	-		Psyr_3344	0.40	+2.1
3,999,600	-		Psyr_3344	0.40	-0.4
3,999,600	-		Psyr_3344	0.40	-0.8
3,999,600	-		Psyr_3344	0.40	+1.5
3,999,600	-		Psyr_3344	0.40	+1.5
3,999,600	-		Psyr_3344	0.40	-1.1
3,999,600	-		Psyr_3344	0.40	+0.5
3,999,600	-		Psyr_3344	0.40	+0.6
3,999,600	-		Psyr_3344	0.40	-0.8
3,999,600	-		Psyr_3344	0.40	+0.5
3,999,601	+		Psyr_3344	0.40	-1.1
3,999,601	+		Psyr_3344	0.40	+1.0
3,999,601	+		Psyr_3344	0.40	+1.3
3,999,601	+		Psyr_3344	0.40	-0.2
3,999,601	+		Psyr_3344	0.40	-1.1
3,999,602	-		Psyr_3344	0.41	-0.3
3,999,670	+		Psyr_3344	0.48	+0.9
3,999,670	+		Psyr_3344	0.48	-0.3
3,999,670	+		Psyr_3344	0.48	+0.6
3,999,670	+		Psyr_3344	0.48	+0.1
3,999,892	-		Psyr_3344	0.73	+0.8
3,999,928	+		Psyr_3344	0.77	+0.7
3,999,928	+		Psyr_3344	0.77	+1.0
3,999,928	+		Psyr_3344	0.77	+0.8
3,999,929	-		Psyr_3344	0.77	-0.2
3,999,929	-		Psyr_3344	0.77	-0.2
3,999,929	-		Psyr_3344	0.77	+1.1
3,999,929	-		Psyr_3344	0.77	-0.8
3,999,933	-		Psyr_3344	0.78	+0.5
3,999,989	+		Psyr_3344	0.84	+0.5
3,999,990	-		Psyr_3344	0.84	-0.1
4,000,011	+		Psyr_3344	0.86	+0.0
4,000,011	+		Psyr_3344	0.86	+0.7
4,000,011	+		Psyr_3344	0.86	-0.2
4,000,153	+				-0.5
4,000,154	-				-0.2
4,000,211	-				-0.7
4,000,314	+				-1.8
4,000,315	-				+0.8
4,000,321	-				-0.2
4,000,332	-				+1.4
4,000,332	-				+0.9
4,000,504	-				-0.4
4,000,504	-				+1.1
4,000,544	-				-0.3
4,000,602	+		Psyr_3345	0.12	+0.5
4,000,602	+		Psyr_3345	0.12	-0.1
4,000,603	-		Psyr_3345	0.12	+0.5
4,000,662	-		Psyr_3345	0.15	+1.2
4,000,872	+		Psyr_3345	0.25	+2.8
4,000,872	+		Psyr_3345	0.25	-0.4
4,000,872	+		Psyr_3345	0.25	+0.3
4,000,872	+		Psyr_3345	0.25	-2.1
4,000,872	+		Psyr_3345	0.25	-0.9
4,000,872	+		Psyr_3345	0.25	+1.2
4,000,873	-		Psyr_3345	0.25	-0.0
4,000,873	-		Psyr_3345	0.25	+0.1
4,000,906	-		Psyr_3345	0.26	-0.0
4,001,004	+		Psyr_3345	0.31	-1.0
4,001,012	+		Psyr_3345	0.31	+0.1
4,001,013	-		Psyr_3345	0.31	+0.1
4,001,013	-		Psyr_3345	0.31	+0.4
4,001,016	+		Psyr_3345	0.32	-0.7
4,001,016	+		Psyr_3345	0.32	+1.1
4,001,016	+		Psyr_3345	0.32	-0.2
4,001,016	+		Psyr_3345	0.32	-0.5
4,001,017	-		Psyr_3345	0.32	-0.2
4,001,017	-		Psyr_3345	0.32	-0.4
4,001,097	+		Psyr_3345	0.35	-0.6
4,001,097	+		Psyr_3345	0.35	+0.5
4,001,097	+		Psyr_3345	0.35	-0.1
4,001,098	-		Psyr_3345	0.35	-0.2
4,001,107	-		Psyr_3345	0.36	+0.5
4,001,107	-		Psyr_3345	0.36	-0.7
4,001,160	-		Psyr_3345	0.38	+0.9
4,001,166	+		Psyr_3345	0.39	-0.9
4,001,166	+		Psyr_3345	0.39	-0.0
4,001,198	+		Psyr_3345	0.40	-1.4
4,001,198	+		Psyr_3345	0.40	+0.6
4,001,199	-		Psyr_3345	0.40	-0.3
4,001,199	-		Psyr_3345	0.40	+0.2
4,001,199	-		Psyr_3345	0.40	-0.7
4,001,199	-		Psyr_3345	0.40	+0.2
4,001,199	-		Psyr_3345	0.40	+0.2
4,001,274	+		Psyr_3345	0.44	-2.3
4,001,371	-		Psyr_3345	0.48	-1.1
4,001,377	-		Psyr_3345	0.49	-0.3
4,001,478	+		Psyr_3345	0.53	-0.8
4,001,478	+		Psyr_3345	0.53	-1.0
4,001,494	-		Psyr_3345	0.54	+0.5
4,001,507	-		Psyr_3345	0.55	-0.1
4,001,523	-		Psyr_3345	0.56	-1.0
4,001,539	-		Psyr_3345	0.56	+0.0
4,001,539	-		Psyr_3345	0.56	-0.6
4,001,571	-		Psyr_3345	0.58	+0.5
4,001,616	+		Psyr_3345	0.60	-0.2
4,001,616	+		Psyr_3345	0.60	-0.8
4,001,617	-		Psyr_3345	0.60	+0.4
4,001,682	+		Psyr_3345	0.63	+0.0
4,001,682	+		Psyr_3345	0.63	+0.3
4,001,682	+		Psyr_3345	0.63	+0.5
4,001,683	-		Psyr_3345	0.63	+0.5
4,001,747	+		Psyr_3345	0.66	-0.8
4,001,747	+		Psyr_3345	0.66	+0.3
4,001,747	+		Psyr_3345	0.66	-0.1
4,001,747	+		Psyr_3345	0.66	-0.6
4,001,747	+		Psyr_3345	0.66	-0.0
4,001,747	+		Psyr_3345	0.66	-0.5
4,001,748	-		Psyr_3345	0.66	+0.4
4,001,749	+		Psyr_3345	0.66	+3.5
4,001,749	+		Psyr_3345	0.66	-1.4
4,001,749	+		Psyr_3345	0.66	-0.9
4,001,749	+		Psyr_3345	0.66	+0.9
4,001,749	+		Psyr_3345	0.66	+0.0
4,001,749	+		Psyr_3345	0.66	-1.0
4,001,749	+		Psyr_3345	0.66	-1.5
4,001,749	+		Psyr_3345	0.66	-1.3
4,001,750	-		Psyr_3345	0.66	+0.9
4,001,750	-		Psyr_3345	0.66	+0.0
4,001,750	-		Psyr_3345	0.66	-1.5
4,001,750	-		Psyr_3345	0.66	+0.5
4,001,750	-		Psyr_3345	0.66	-2.3
4,001,774	-		Psyr_3345	0.67	-0.8
4,001,774	-		Psyr_3345	0.67	+0.8
4,001,802	+		Psyr_3345	0.69	-0.7
4,001,802	+		Psyr_3345	0.69	-0.5
4,001,803	-		Psyr_3345	0.69	-2.2
4,001,811	+		Psyr_3345	0.69	+0.6
4,001,811	+		Psyr_3345	0.69	+0.6
4,001,811	+		Psyr_3345	0.69	+0.4
4,001,812	-		Psyr_3345	0.69	+0.1
4,001,812	-		Psyr_3345	0.69	+1.3
4,001,812	-		Psyr_3345	0.69	-0.1
4,001,887	-		Psyr_3345	0.73	+0.1
4,001,904	+		Psyr_3345	0.74	+0.1
4,001,904	+		Psyr_3345	0.74	+0.3
4,001,905	-		Psyr_3345	0.74	+1.9
4,001,905	-		Psyr_3345	0.74	+1.1
4,001,950	+		Psyr_3345	0.76	-0.9
4,001,950	+		Psyr_3345	0.76	+0.1
4,001,951	-		Psyr_3345	0.76	-0.1
4,001,951	-		Psyr_3345	0.76	-2.3
4,001,951	-		Psyr_3345	0.76	-0.8
4,001,951	-		Psyr_3345	0.76	+0.8
4,001,951	-		Psyr_3345	0.76	-0.3
4,001,951	-		Psyr_3345	0.76	-0.4
4,002,078	+		Psyr_3345	0.82	-0.3
4,002,078	+		Psyr_3345	0.82	-0.4
4,002,078	+		Psyr_3345	0.82	+1.5
4,002,078	+		Psyr_3345	0.82	-0.6
4,002,078	+		Psyr_3345	0.82	+1.1
4,002,078	+		Psyr_3345	0.82	+1.6
4,002,078	+		Psyr_3345	0.82	+0.1
4,002,079	-		Psyr_3345	0.82	-0.4
4,002,079	-		Psyr_3345	0.82	-0.0
4,002,079	-		Psyr_3345	0.82	+0.9
4,002,079	-		Psyr_3345	0.82	+0.1
4,002,079	-		Psyr_3345	0.82	-0.9
4,002,079	-		Psyr_3345	0.82	+0.0
4,002,079	-		Psyr_3345	0.82	-0.5
4,002,079	-		Psyr_3345	0.82	-1.1
4,002,079	-		Psyr_3345	0.82	-0.1
4,002,084	+		Psyr_3345	0.82	-0.9
4,002,084	+		Psyr_3345	0.82	-0.5
4,002,084	+		Psyr_3345	0.82	-0.0
4,002,084	+		Psyr_3345	0.82	+0.9
4,002,084	+		Psyr_3345	0.82	-1.1
4,002,084	+		Psyr_3345	0.82	-1.3
4,002,084	+		Psyr_3345	0.82	-0.7
4,002,084	+		Psyr_3345	0.82	-0.2
4,002,085	-		Psyr_3345	0.82	+0.2
4,002,085	-		Psyr_3345	0.82	-0.9
4,002,085	-		Psyr_3345	0.82	-0.5
4,002,085	-		Psyr_3345	0.82	-1.6
4,002,085	-		Psyr_3345	0.82	+0.5
4,002,092	+		Psyr_3345	0.82	+0.7
4,002,092	+		Psyr_3345	0.82	-2.2
4,002,152	+		Psyr_3345	0.85	-0.3
4,002,165	+		Psyr_3345	0.86	+0.6
4,002,165	+		Psyr_3345	0.86	-0.5
4,002,231	+		Psyr_3345	0.89	+0.1
4,002,232	-		Psyr_3345	0.89	+0.5
4,002,232	-		Psyr_3345	0.89	+0.5
4,002,270	+				-0.2
4,002,270	+				-0.3
4,002,270	+				+0.3
4,002,270	+				+1.4
4,002,270	+				-0.3
4,002,270	+				+0.5
4,002,270	+				-0.5
4,002,270	+				+0.3
4,002,271	-				-1.4
4,002,271	-				+1.3
4,002,271	-				-0.1
4,002,282	+				-0.0
4,002,282	+				-0.3
4,002,282	+				-0.5
4,002,282	+				-0.1
4,002,283	-				+1.0
4,002,331	-				-0.5
4,002,332	+				+0.5
4,002,332	+				-0.8
4,002,332	+				-0.2
4,002,332	+				-0.4
4,002,333	-				+1.3
4,002,333	-				-0.3
4,002,378	+				-0.7
4,002,378	+				-1.6
4,002,379	-				-0.4
4,002,462	+				+0.0
4,002,462	+				-0.8
4,002,463	-				-1.5
4,002,463	-				-0.3
4,002,463	-				+1.9
4,002,573	-				-0.8
4,002,825	+		Psyr_3346	0.58	+0.7
4,002,826	-		Psyr_3346	0.58	-0.7
4,002,826	-		Psyr_3346	0.58	-0.1
4,002,886	+		Psyr_3346	0.70	+1.1
4,002,887	-		Psyr_3346	0.70	-1.1
4,002,887	-		Psyr_3346	0.70	+0.6
4,002,887	-		Psyr_3346	0.70	-1.1
4,002,901	-		Psyr_3346	0.72	-0.3
4,002,920	-		Psyr_3346	0.76	-0.7
4,003,044	+				-0.1
4,003,044	+				-0.2
4,003,044	+				-0.8
4,003,045	-				+1.1
4,003,045	-				-1.4
4,003,045	-				+0.8
4,003,111	+				-1.1
4,003,111	+				+0.3
4,003,112	-				-0.0
4,003,112	-				+0.9
4,003,112	-				+0.3
4,003,112	-				-1.3
4,003,112	-				+0.4
4,003,112	-				-0.2
4,003,112	-				-0.2
4,003,112	-				+0.1
4,003,112	-				-0.4
4,003,112	-				+0.1
4,003,115	+				+1.3
4,003,116	-				-1.1
4,003,116	-				-0.4
4,003,116	-				+1.1
4,003,116	-				-0.6
4,003,133	-				-0.9
4,003,225	-				+0.8
4,003,361	+		Psyr_3347	0.21	-2.1
4,003,361	+		Psyr_3347	0.21	+3.1
4,003,361	+		Psyr_3347	0.21	-1.1
4,003,361	+		Psyr_3347	0.21	-0.3
4,003,361	+		Psyr_3347	0.21	-0.1
4,003,361	+		Psyr_3347	0.21	-0.8
4,003,361	+		Psyr_3347	0.21	+0.5
4,003,361	+		Psyr_3347	0.21	-0.3
4,003,361	+		Psyr_3347	0.21	-0.2
4,003,361	+		Psyr_3347	0.21	-0.1
4,003,361	+		Psyr_3347	0.21	+0.9
4,003,361	+		Psyr_3347	0.21	+0.1
4,003,361	+		Psyr_3347	0.21	-0.0
4,003,362	-		Psyr_3347	0.22	-0.4
4,003,362	-		Psyr_3347	0.22	-1.3
4,003,362	-		Psyr_3347	0.22	-1.3
4,003,362	-		Psyr_3347	0.22	-1.2
4,003,362	-		Psyr_3347	0.22	-1.8
4,003,362	-		Psyr_3347	0.22	-0.9
4,003,362	-		Psyr_3347	0.22	+0.2
4,003,362	-		Psyr_3347	0.22	+0.6
4,003,362	-		Psyr_3347	0.22	+0.1
4,003,362	-		Psyr_3347	0.22	+0.2
4,003,362	-		Psyr_3347	0.22	+1.5
4,003,362	-		Psyr_3347	0.22	-1.5
4,003,362	-		Psyr_3347	0.22	+0.1
4,003,362	-		Psyr_3347	0.22	+0.0
4,003,362	-		Psyr_3347	0.22	+0.1
4,003,363	+		Psyr_3347	0.22	+0.6
4,003,363	+		Psyr_3347	0.22	+2.6
4,003,364	-		Psyr_3347	0.22	-0.4
4,003,364	-		Psyr_3347	0.22	-0.2
4,003,364	-		Psyr_3347	0.22	-1.9
4,003,364	-		Psyr_3347	0.22	-0.1
4,003,364	-		Psyr_3347	0.22	+0.3
4,003,364	-		Psyr_3347	0.22	-1.5
4,003,364	-		Psyr_3347	0.22	+0.8
4,003,364	-		Psyr_3347	0.22	-0.9
4,003,364	-		Psyr_3347	0.22	-0.9
4,003,364	-		Psyr_3347	0.22	+0.1
4,003,364	-		Psyr_3347	0.22	+0.1
4,003,367	+		Psyr_3347	0.22	-1.4
4,003,367	+		Psyr_3347	0.22	-2.5
4,003,367	+		Psyr_3347	0.22	-1.1
4,003,367	+		Psyr_3347	0.22	-2.0
4,003,368	-		Psyr_3347	0.22	-0.3
4,003,368	-		Psyr_3347	0.22	-0.2
4,003,368	-		Psyr_3347	0.22	-1.5
4,003,368	-		Psyr_3347	0.22	+0.3
4,003,368	-		Psyr_3347	0.22	-1.1
4,003,368	-		Psyr_3347	0.22	+0.1
4,003,368	-		Psyr_3347	0.22	-2.1
4,003,368	-		Psyr_3347	0.22	+0.1