Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3225

Experiment: KB with Rifampicin 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3223 and Psyr_3224 overlap by 11 nucleotidesPsyr_3224 and Psyr_3225 are separated by 0 nucleotidesPsyr_3225 and Psyr_3226 are separated by 52 nucleotidesPsyr_3226 and Psyr_3227 are separated by 85 nucleotides Psyr_3223: Psyr_3223 - Glycosyl transferase, family 2, at 3,861,098 to 3,862,033 _3223 Psyr_3224: Psyr_3224 - Low molecular weight phosphotyrosine protein phosphatase, at 3,862,023 to 3,862,475 _3224 Psyr_3225: Psyr_3225 - Protein-tyrosine kinase, at 3,862,476 to 3,864,683 _3225 Psyr_3226: Psyr_3226 - Transcriptional activator RfaH, at 3,864,736 to 3,865,248 _3226 Psyr_3227: Psyr_3227 - Glycosyl transferase, family 2, at 3,865,334 to 3,866,335 _3227 Position (kb) 3862 3863 3864 3865Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 3861.491 kb on + strand, within Psyr_3223at 3861.491 kb on + strand, within Psyr_3223at 3861.492 kb on - strand, within Psyr_3223at 3861.492 kb on - strand, within Psyr_3223at 3861.503 kb on + strand, within Psyr_3223at 3861.503 kb on + strand, within Psyr_3223at 3861.503 kb on + strand, within Psyr_3223at 3861.504 kb on - strand, within Psyr_3223at 3861.539 kb on + strand, within Psyr_3223at 3861.691 kb on + strand, within Psyr_3223at 3861.691 kb on + strand, within Psyr_3223at 3861.691 kb on + strand, within Psyr_3223at 3861.691 kb on + strand, within Psyr_3223at 3861.851 kb on + strand, within Psyr_3223at 3861.851 kb on + strand, within Psyr_3223at 3861.852 kb on - strand, within Psyr_3223at 3861.852 kb on - strand, within Psyr_3223at 3861.852 kb on - strand, within Psyr_3223at 3861.852 kb on - strand, within Psyr_3223at 3861.852 kb on - strand, within Psyr_3223at 3861.852 kb on - strand, within Psyr_3223at 3861.852 kb on - strand, within Psyr_3223at 3861.852 kb on - strand, within Psyr_3223at 3861.854 kb on + strand, within Psyr_3223at 3861.855 kb on - strand, within Psyr_3223at 3861.855 kb on - strand, within Psyr_3223at 3861.881 kb on + strand, within Psyr_3223at 3861.881 kb on + strand, within Psyr_3223at 3861.887 kb on + strand, within Psyr_3223at 3862.031 kb on + strandat 3862.117 kb on + strand, within Psyr_3224at 3862.117 kb on + strand, within Psyr_3224at 3862.117 kb on + strand, within Psyr_3224at 3862.118 kb on - strand, within Psyr_3224at 3862.121 kb on + strand, within Psyr_3224at 3862.121 kb on + strand, within Psyr_3224at 3862.121 kb on + strand, within Psyr_3224at 3862.122 kb on - strand, within Psyr_3224at 3862.122 kb on - strand, within Psyr_3224at 3862.410 kb on + strand, within Psyr_3224at 3862.411 kb on - strand, within Psyr_3224at 3862.411 kb on - strand, within Psyr_3224at 3862.411 kb on - strand, within Psyr_3224at 3862.474 kb on - strandat 3862.638 kb on + strandat 3862.639 kb on - strandat 3862.639 kb on - strandat 3862.663 kb on + strandat 3862.802 kb on + strand, within Psyr_3225at 3862.803 kb on - strand, within Psyr_3225at 3862.842 kb on + strand, within Psyr_3225at 3862.895 kb on - strand, within Psyr_3225at 3862.895 kb on - strand, within Psyr_3225at 3863.019 kb on + strand, within Psyr_3225at 3863.020 kb on - strand, within Psyr_3225at 3863.099 kb on + strand, within Psyr_3225at 3863.169 kb on + strand, within Psyr_3225at 3863.169 kb on + strand, within Psyr_3225at 3863.169 kb on + strand, within Psyr_3225at 3863.220 kb on + strand, within Psyr_3225at 3863.220 kb on + strand, within Psyr_3225at 3863.220 kb on + strand, within Psyr_3225at 3863.220 kb on + strand, within Psyr_3225at 3863.221 kb on - strand, within Psyr_3225at 3863.221 kb on - strand, within Psyr_3225at 3863.221 kb on - strand, within Psyr_3225at 3863.221 kb on - strand, within Psyr_3225at 3863.286 kb on + strand, within Psyr_3225at 3863.286 kb on + strand, within Psyr_3225at 3863.286 kb on + strand, within Psyr_3225at 3863.287 kb on - strand, within Psyr_3225at 3863.290 kb on + strand, within Psyr_3225at 3863.290 kb on + strand, within Psyr_3225at 3863.290 kb on + strand, within Psyr_3225at 3863.290 kb on + strand, within Psyr_3225at 3863.291 kb on - strand, within Psyr_3225at 3863.291 kb on - strand, within Psyr_3225at 3863.291 kb on - strand, within Psyr_3225at 3863.291 kb on - strand, within Psyr_3225at 3863.291 kb on - strand, within Psyr_3225at 3863.403 kb on - strand, within Psyr_3225at 3863.529 kb on + strand, within Psyr_3225at 3863.529 kb on + strand, within Psyr_3225at 3863.530 kb on - strand, within Psyr_3225at 3863.530 kb on - strand, within Psyr_3225at 3863.530 kb on - strand, within Psyr_3225at 3863.531 kb on + strand, within Psyr_3225at 3863.532 kb on - strand, within Psyr_3225at 3863.532 kb on - strand, within Psyr_3225at 3863.685 kb on + strand, within Psyr_3225at 3863.685 kb on + strand, within Psyr_3225at 3863.685 kb on + strand, within Psyr_3225at 3863.686 kb on - strand, within Psyr_3225at 3863.749 kb on + strand, within Psyr_3225at 3863.750 kb on - strand, within Psyr_3225at 3863.860 kb on + strand, within Psyr_3225at 3864.423 kb on + strand, within Psyr_3225at 3864.424 kb on - strand, within Psyr_3225at 3864.424 kb on - strand, within Psyr_3225at 3864.424 kb on - strand, within Psyr_3225at 3864.637 kb on - strandat 3864.657 kb on + strandat 3864.663 kb on + strandat 3864.663 kb on + strandat 3864.664 kb on - strandat 3864.664 kb on - strandat 3864.664 kb on - strandat 3864.681 kb on + strandat 3864.721 kb on + strandat 3864.722 kb on - strandat 3864.722 kb on - strandat 3864.731 kb on + strandat 3864.731 kb on + strandat 3864.732 kb on - strandat 3864.911 kb on - strand, within Psyr_3226at 3865.179 kb on + strand, within Psyr_3226at 3865.179 kb on + strand, within Psyr_3226at 3865.179 kb on + strand, within Psyr_3226at 3865.179 kb on + strand, within Psyr_3226at 3865.180 kb on - strand, within Psyr_3226at 3865.180 kb on - strand, within Psyr_3226at 3865.180 kb on - strand, within Psyr_3226at 3865.308 kb on + strandat 3865.309 kb on - strandat 3865.309 kb on - strandat 3865.309 kb on - strandat 3865.309 kb on - strandat 3865.309 kb on - strandat 3865.367 kb on + strandat 3865.367 kb on + strandat 3865.367 kb on + strandat 3865.367 kb on + strandat 3865.367 kb on + strandat 3865.368 kb on - strandat 3865.368 kb on - strandat 3865.368 kb on - strandat 3865.368 kb on - strandat 3865.368 kb on - strandat 3865.368 kb on - strandat 3865.368 kb on - strandat 3865.385 kb on + strandat 3865.385 kb on + strandat 3865.392 kb on - strandat 3865.555 kb on - strand, within Psyr_3227at 3865.594 kb on - strand, within Psyr_3227at 3865.594 kb on - strand, within Psyr_3227at 3865.641 kb on + strand, within Psyr_3227at 3865.641 kb on + strand, within Psyr_3227

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Rifampicin 0.1 mg/ml
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3,861,491 + Psyr_3223 0.42 -0.4
3,861,491 + Psyr_3223 0.42 +0.7
3,861,492 - Psyr_3223 0.42 +0.2
3,861,492 - Psyr_3223 0.42 -1.1
3,861,503 + Psyr_3223 0.43 -0.7
3,861,503 + Psyr_3223 0.43 -0.8
3,861,503 + Psyr_3223 0.43 +0.4
3,861,504 - Psyr_3223 0.43 +0.4
3,861,539 + Psyr_3223 0.47 +1.6
3,861,691 + Psyr_3223 0.63 +1.6
3,861,691 + Psyr_3223 0.63 -0.1
3,861,691 + Psyr_3223 0.63 +0.4
3,861,691 + Psyr_3223 0.63 +0.1
3,861,851 + Psyr_3223 0.80 -0.6
3,861,851 + Psyr_3223 0.80 -1.2
3,861,852 - Psyr_3223 0.81 +0.4
3,861,852 - Psyr_3223 0.81 -0.6
3,861,852 - Psyr_3223 0.81 +0.5
3,861,852 - Psyr_3223 0.81 +2.1
3,861,852 - Psyr_3223 0.81 +0.4
3,861,852 - Psyr_3223 0.81 +2.0
3,861,852 - Psyr_3223 0.81 -1.8
3,861,852 - Psyr_3223 0.81 -0.7
3,861,854 + Psyr_3223 0.81 +1.0
3,861,855 - Psyr_3223 0.81 -2.6
3,861,855 - Psyr_3223 0.81 -1.1
3,861,881 + Psyr_3223 0.84 +1.0
3,861,881 + Psyr_3223 0.84 +0.4
3,861,887 + Psyr_3223 0.84 +1.5
3,862,031 + +1.7
3,862,117 + Psyr_3224 0.21 +0.5
3,862,117 + Psyr_3224 0.21 +1.1
3,862,117 + Psyr_3224 0.21 -0.6
3,862,118 - Psyr_3224 0.21 +0.4
3,862,121 + Psyr_3224 0.22 -1.6
3,862,121 + Psyr_3224 0.22 -1.1
3,862,121 + Psyr_3224 0.22 +2.0
3,862,122 - Psyr_3224 0.22 -0.2
3,862,122 - Psyr_3224 0.22 -0.2
3,862,410 + Psyr_3224 0.85 -2.5
3,862,411 - Psyr_3224 0.86 -0.6
3,862,411 - Psyr_3224 0.86 -0.6
3,862,411 - Psyr_3224 0.86 -1.6
3,862,474 - -0.1
3,862,638 + +0.6
3,862,639 - +1.4
3,862,639 - -0.2
3,862,663 + +1.3
3,862,802 + Psyr_3225 0.15 +0.3
3,862,803 - Psyr_3225 0.15 -0.0
3,862,842 + Psyr_3225 0.17 -0.5
3,862,895 - Psyr_3225 0.19 +1.4
3,862,895 - Psyr_3225 0.19 -0.4
3,863,019 + Psyr_3225 0.25 +2.7
3,863,020 - Psyr_3225 0.25 +0.2
3,863,099 + Psyr_3225 0.28 +0.2
3,863,169 + Psyr_3225 0.31 -1.3
3,863,169 + Psyr_3225 0.31 +0.4
3,863,169 + Psyr_3225 0.31 +1.0
3,863,220 + Psyr_3225 0.34 +1.2
3,863,220 + Psyr_3225 0.34 -0.3
3,863,220 + Psyr_3225 0.34 +0.1
3,863,220 + Psyr_3225 0.34 +1.3
3,863,221 - Psyr_3225 0.34 +0.7
3,863,221 - Psyr_3225 0.34 +0.1
3,863,221 - Psyr_3225 0.34 -0.3
3,863,221 - Psyr_3225 0.34 +1.3
3,863,286 + Psyr_3225 0.37 +0.0
3,863,286 + Psyr_3225 0.37 -0.8
3,863,286 + Psyr_3225 0.37 +0.4
3,863,287 - Psyr_3225 0.37 +0.2
3,863,290 + Psyr_3225 0.37 +1.0
3,863,290 + Psyr_3225 0.37 -1.8
3,863,290 + Psyr_3225 0.37 +1.4
3,863,290 + Psyr_3225 0.37 +0.4
3,863,291 - Psyr_3225 0.37 -0.1
3,863,291 - Psyr_3225 0.37 +1.4
3,863,291 - Psyr_3225 0.37 -1.3
3,863,291 - Psyr_3225 0.37 +1.3
3,863,291 - Psyr_3225 0.37 -0.4
3,863,403 - Psyr_3225 0.42 -0.6
3,863,529 + Psyr_3225 0.48 +0.4
3,863,529 + Psyr_3225 0.48 -0.1
3,863,530 - Psyr_3225 0.48 +1.2
3,863,530 - Psyr_3225 0.48 +1.4
3,863,530 - Psyr_3225 0.48 +0.1
3,863,531 + Psyr_3225 0.48 -2.3
3,863,532 - Psyr_3225 0.48 -1.2
3,863,532 - Psyr_3225 0.48 +0.4
3,863,685 + Psyr_3225 0.55 -1.3
3,863,685 + Psyr_3225 0.55 +0.1
3,863,685 + Psyr_3225 0.55 +1.3
3,863,686 - Psyr_3225 0.55 -0.4
3,863,749 + Psyr_3225 0.58 -0.3
3,863,750 - Psyr_3225 0.58 +1.6
3,863,860 + Psyr_3225 0.63 +0.1
3,864,423 + Psyr_3225 0.88 +0.5
3,864,424 - Psyr_3225 0.88 +0.7
3,864,424 - Psyr_3225 0.88 +0.9
3,864,424 - Psyr_3225 0.88 +0.5
3,864,637 - -2.1
3,864,657 + -0.6
3,864,663 + +2.7
3,864,663 + +0.6
3,864,664 - +1.0
3,864,664 - +0.2
3,864,664 - +0.6
3,864,681 + +2.0
3,864,721 + -0.7
3,864,722 - -0.6
3,864,722 - -0.4
3,864,731 + +1.0
3,864,731 + -0.1
3,864,732 - +0.4
3,864,911 - Psyr_3226 0.34 +4.1
3,865,179 + Psyr_3226 0.86 +1.0
3,865,179 + Psyr_3226 0.86 +0.5
3,865,179 + Psyr_3226 0.86 +0.8
3,865,179 + Psyr_3226 0.86 +0.7
3,865,180 - Psyr_3226 0.87 +0.1
3,865,180 - Psyr_3226 0.87 +0.4
3,865,180 - Psyr_3226 0.87 -0.7
3,865,308 + +0.9
3,865,309 - -0.8
3,865,309 - +1.6
3,865,309 - +1.2
3,865,309 - -0.3
3,865,309 - -1.8
3,865,367 + +0.2
3,865,367 + -0.9
3,865,367 + -0.3
3,865,367 + -0.6
3,865,367 + +3.0
3,865,368 - +1.3
3,865,368 - +0.9
3,865,368 - -0.7
3,865,368 - -1.2
3,865,368 - -1.9
3,865,368 - +0.4
3,865,368 - -0.6
3,865,385 + +0.4
3,865,385 + +0.2
3,865,392 - +0.4
3,865,555 - Psyr_3227 0.22 +0.2
3,865,594 - Psyr_3227 0.26 +1.2
3,865,594 - Psyr_3227 0.26 -0.5
3,865,641 + Psyr_3227 0.31 +1.4
3,865,641 + Psyr_3227 0.31 +1.4

Or see this region's nucleotide sequence