Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3161

Experiment: KB with Rifampicin 0.1 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Rifampicin 0.1 mg/ml
3,788,127	+		Psyr_3160	0.43	+0.5
3,788,145	-		Psyr_3160	0.44	-0.9
3,788,154	+		Psyr_3160	0.45	+0.7
3,788,154	+		Psyr_3160	0.45	+0.7
3,788,154	+		Psyr_3160	0.45	-0.9
3,788,155	-		Psyr_3160	0.45	+1.9
3,788,155	-		Psyr_3160	0.45	-0.3
3,788,155	-		Psyr_3160	0.45	-1.3
3,788,156	+		Psyr_3160	0.45	-0.2
3,788,156	+		Psyr_3160	0.45	+2.1
3,788,156	+		Psyr_3160	0.45	-0.7
3,788,156	+		Psyr_3160	0.45	-0.7
3,788,156	+		Psyr_3160	0.45	-0.3
3,788,156	+		Psyr_3160	0.45	-1.6
3,788,156	+		Psyr_3160	0.45	-0.3
3,788,156	+		Psyr_3160	0.45	+0.3
3,788,157	-		Psyr_3160	0.45	+0.5
3,788,157	-		Psyr_3160	0.45	-1.8
3,788,157	-				-1.2
3,788,157	-		Psyr_3160	0.45	+1.4
3,788,157	-		Psyr_3160	0.45	+3.1
3,788,157	-		Psyr_3160	0.45	+0.5
3,788,157	-		Psyr_3160	0.45	+0.7
3,788,157	-		Psyr_3160	0.45	-0.5
3,788,676	+		Psyr_3160	0.84	+0.3
3,788,888	+				+0.5
3,788,888	+				+0.3
3,788,888	+				+0.4
3,788,888	+				+0.5
3,788,888	+				+1.5
3,788,889	-				+0.6
3,789,100	+		Psyr_3161	0.12	+0.3
3,789,341	+		Psyr_3161	0.25	-0.1
3,789,457	+		Psyr_3161	0.32	+1.3
3,789,458	-		Psyr_3161	0.32	+1.2
3,789,459	+		Psyr_3161	0.32	+0.5
3,789,459	+		Psyr_3161	0.32	+0.9
3,789,460	-		Psyr_3161	0.32	+0.5
3,789,460	-		Psyr_3161	0.32	+0.4
3,789,460	-		Psyr_3161	0.32	+0.7
3,789,460	-		Psyr_3161	0.32	+1.0
3,789,460	-		Psyr_3161	0.32	+1.2
3,789,513	-		Psyr_3161	0.35	-1.6
3,789,735	+		Psyr_3161	0.47	+0.5
3,789,735	+		Psyr_3161	0.47	+1.8
3,789,736	-		Psyr_3161	0.47	+0.5
3,789,736	-		Psyr_3161	0.47	-0.1
3,790,242	+		Psyr_3161	0.76	-0.5
3,790,242	+		Psyr_3161	0.76	+0.8
3,790,242	+		Psyr_3161	0.76	-0.2
3,790,242	+		Psyr_3161	0.76	+0.2
3,790,242	+		Psyr_3161	0.76	+0.4
3,790,242	+		Psyr_3161	0.76	+0.3
3,790,242	+		Psyr_3161	0.76	-0.3
3,790,243	-		Psyr_3161	0.76	+0.5
3,790,243	-		Psyr_3161	0.76	+1.5
3,790,529	+				+0.4
3,790,540	-				-1.0
3,790,540	-				+0.4
3,790,554	+				-0.5
3,790,555	-				+1.5
3,790,627	-				-0.6
3,790,642	+				-0.7
3,790,642	+				+0.4
3,790,748	-				+0.0
3,790,818	+		Psyr_3162	0.18	-0.7
3,790,819	-		Psyr_3162	0.18	+1.0
3,790,819	-		Psyr_3162	0.18	+2.2
3,790,819	-		Psyr_3162	0.18	+0.8
3,790,837	+		Psyr_3162	0.24	+0.4
3,791,198	-				-0.1
3,791,205	-				-0.1
3,791,236	+				+0.9
3,791,236	+				+0.7
3,791,236	+				+0.8
3,791,236	+				+1.0
3,791,236	+				+2.7
3,791,237	-				-1.3
3,791,237	-				-1.0
3,791,237	-				-0.2
3,791,237	-				-0.6
3,791,237	-				-0.4
3,791,314	-				+0.0
3,791,315	+				+1.2
3,791,315	+				+1.3
3,791,315	+				+0.1
3,791,315	+				+1.1
3,791,315	+				-0.6
3,791,316	-				-0.4
3,791,316	-				+0.1
3,791,316	-				+0.8
3,791,316	-				+0.6
3,791,433	+				+0.4
3,791,434	-		Psyr_3163	0.16	+0.8
3,791,528	+		Psyr_3163	0.23	-1.1
3,791,528	+		Psyr_3163	0.23	-0.7
3,791,528	+		Psyr_3163	0.23	-1.6
3,791,528	+		Psyr_3163	0.23	+0.8
3,791,528	+		Psyr_3163	0.23	-0.8
3,791,529	-		Psyr_3163	0.23	+0.1
3,791,529	-		Psyr_3163	0.23	+1.2
3,791,529	-		Psyr_3163	0.23	-0.6