Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2757

Experiment: KB with Rifampicin 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2755 and Psyr_2756 are separated by 101 nucleotidesPsyr_2756 and Psyr_2757 are separated by 0 nucleotidesPsyr_2757 and Psyr_2758 are separated by 3 nucleotides Psyr_2755: Psyr_2755 - 2-nitropropane dioxygenase, NPD, at 3,342,992 to 3,344,071 _2755 Psyr_2756: Psyr_2756 - Molybdenum ABC transporter, periplasmic binding protein, at 3,344,173 to 3,344,940 _2756 Psyr_2757: Psyr_2757 - Binding-protein-dependent transport systems inner membrane component, at 3,344,941 to 3,345,621 _2757 Psyr_2758: Psyr_2758 - ABC transporter:TOBE, at 3,345,625 to 3,346,713 _2758 Position (kb) 3344 3345 3346Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3344.102 kb on + strandat 3344.103 kb on - strandat 3344.104 kb on + strandat 3344.105 kb on - strandat 3344.106 kb on + strandat 3344.106 kb on + strandat 3344.106 kb on + strandat 3344.106 kb on + strandat 3344.106 kb on + strandat 3344.107 kb on - strandat 3344.107 kb on - strandat 3344.111 kb on - strandat 3344.114 kb on + strandat 3344.115 kb on - strandat 3344.115 kb on - strandat 3344.115 kb on - strandat 3344.117 kb on - strandat 3344.184 kb on + strandat 3344.374 kb on + strand, within Psyr_2756at 3344.374 kb on + strand, within Psyr_2756at 3344.374 kb on + strand, within Psyr_2756at 3344.374 kb on + strand, within Psyr_2756at 3344.374 kb on + strand, within Psyr_2756at 3344.375 kb on - strand, within Psyr_2756at 3344.375 kb on - strand, within Psyr_2756at 3344.375 kb on - strand, within Psyr_2756at 3344.375 kb on - strand, within Psyr_2756at 3344.481 kb on + strand, within Psyr_2756at 3344.486 kb on - strand, within Psyr_2756at 3344.527 kb on + strand, within Psyr_2756at 3344.527 kb on + strand, within Psyr_2756at 3344.527 kb on + strand, within Psyr_2756at 3344.527 kb on + strand, within Psyr_2756at 3344.527 kb on + strand, within Psyr_2756at 3344.528 kb on - strand, within Psyr_2756at 3344.528 kb on - strand, within Psyr_2756at 3344.528 kb on - strand, within Psyr_2756at 3344.528 kb on - strand, within Psyr_2756at 3344.528 kb on - strand, within Psyr_2756at 3344.528 kb on - strand, within Psyr_2756at 3344.528 kb on - strand, within Psyr_2756at 3344.550 kb on - strand, within Psyr_2756at 3344.550 kb on - strand, within Psyr_2756at 3344.688 kb on + strand, within Psyr_2756at 3344.755 kb on + strand, within Psyr_2756at 3344.755 kb on + strand, within Psyr_2756at 3344.755 kb on + strand, within Psyr_2756at 3344.756 kb on - strand, within Psyr_2756at 3344.756 kb on - strand, within Psyr_2756at 3344.756 kb on - strand, within Psyr_2756at 3344.756 kb on - strand, within Psyr_2756at 3344.756 kb on - strand, within Psyr_2756at 3344.938 kb on + strandat 3344.938 kb on + strandat 3344.939 kb on - strandat 3345.134 kb on - strand, within Psyr_2757at 3345.177 kb on + strand, within Psyr_2757at 3345.177 kb on + strand, within Psyr_2757at 3345.321 kb on + strand, within Psyr_2757at 3345.322 kb on - strand, within Psyr_2757at 3345.440 kb on + strand, within Psyr_2757at 3345.587 kb on - strandat 3345.587 kb on - strandat 3345.587 kb on - strandat 3345.587 kb on - strandat 3345.871 kb on + strand, within Psyr_2758at 3346.195 kb on + strand, within Psyr_2758at 3346.195 kb on + strand, within Psyr_2758at 3346.196 kb on - strand, within Psyr_2758at 3346.196 kb on - strand, within Psyr_2758at 3346.196 kb on - strand, within Psyr_2758at 3346.266 kb on - strand, within Psyr_2758at 3346.366 kb on + strand, within Psyr_2758at 3346.366 kb on + strand, within Psyr_2758at 3346.367 kb on - strand, within Psyr_2758at 3346.367 kb on - strand, within Psyr_2758at 3346.367 kb on - strand, within Psyr_2758at 3346.379 kb on - strand, within Psyr_2758

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Rifampicin 0.1 mg/ml
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3,344,102 + -0.3
3,344,103 - -1.1
3,344,104 + +0.2
3,344,105 - +1.3
3,344,106 + -0.8
3,344,106 + -0.2
3,344,106 + -0.3
3,344,106 + +1.2
3,344,106 + -0.4
3,344,107 - +1.0
3,344,107 - -0.5
3,344,111 - -0.3
3,344,114 + -0.7
3,344,115 - -0.5
3,344,115 - -0.2
3,344,115 - -0.3
3,344,117 - -1.3
3,344,184 + -1.1
3,344,374 + Psyr_2756 0.26 +0.1
3,344,374 + Psyr_2756 0.26 +2.9
3,344,374 + Psyr_2756 0.26 -0.9
3,344,374 + Psyr_2756 0.26 -0.2
3,344,374 + Psyr_2756 0.26 +0.9
3,344,375 - Psyr_2756 0.26 -2.1
3,344,375 - Psyr_2756 0.26 +0.2
3,344,375 - Psyr_2756 0.26 +0.3
3,344,375 - Psyr_2756 0.26 +0.3
3,344,481 + Psyr_2756 0.40 -0.5
3,344,486 - Psyr_2756 0.41 +0.0
3,344,527 + Psyr_2756 0.46 -0.6
3,344,527 + Psyr_2756 0.46 -0.5
3,344,527 + Psyr_2756 0.46 +0.9
3,344,527 + Psyr_2756 0.46 -0.1
3,344,527 + Psyr_2756 0.46 +0.9
3,344,528 - Psyr_2756 0.46 -0.1
3,344,528 - Psyr_2756 0.46 +0.2
3,344,528 - Psyr_2756 0.46 -0.6
3,344,528 - Psyr_2756 0.46 +0.5
3,344,528 - Psyr_2756 0.46 +0.5
3,344,528 - Psyr_2756 0.46 +0.9
3,344,528 - Psyr_2756 0.46 -0.1
3,344,550 - Psyr_2756 0.49 +2.1
3,344,550 - Psyr_2756 0.49 -0.3
3,344,688 + Psyr_2756 0.67 +0.0
3,344,755 + Psyr_2756 0.76 -0.1
3,344,755 + Psyr_2756 0.76 -0.9
3,344,755 + Psyr_2756 0.76 -1.3
3,344,756 - Psyr_2756 0.76 +0.2
3,344,756 - Psyr_2756 0.76 +2.7
3,344,756 - Psyr_2756 0.76 +0.7
3,344,756 - Psyr_2756 0.76 +2.0
3,344,756 - Psyr_2756 0.76 +1.6
3,344,938 + +0.8
3,344,938 + +0.4
3,344,939 - +0.3
3,345,134 - Psyr_2757 0.28 -0.1
3,345,177 + Psyr_2757 0.35 +1.7
3,345,177 + Psyr_2757 0.35 +1.5
3,345,321 + Psyr_2757 0.56 +1.0
3,345,322 - Psyr_2757 0.56 +0.8
3,345,440 + Psyr_2757 0.73 +1.9
3,345,587 - -1.5
3,345,587 - +1.2
3,345,587 - -0.8
3,345,587 - -0.3
3,345,871 + Psyr_2758 0.23 +0.7
3,346,195 + Psyr_2758 0.52 -0.9
3,346,195 + Psyr_2758 0.52 +2.1
3,346,196 - Psyr_2758 0.52 -0.1
3,346,196 - Psyr_2758 0.52 +0.0
3,346,196 - Psyr_2758 0.52 -0.3
3,346,266 - Psyr_2758 0.59 +1.5
3,346,366 + Psyr_2758 0.68 +0.1
3,346,366 + Psyr_2758 0.68 -0.1
3,346,367 - Psyr_2758 0.68 -2.8
3,346,367 - Psyr_2758 0.68 -0.1
3,346,367 - Psyr_2758 0.68 +1.2
3,346,379 - Psyr_2758 0.69 +0.7

Or see this region's nucleotide sequence