Experiment: KB with Rifampicin 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_2482 and Psyr_2483 overlap by 4 nucleotides Psyr_2483 and Psyr_2484 overlap by 4 nucleotides
Psyr_2482: Psyr_2482 - Secretion protein HlyD, at 2,879,475 to 2,880,779
_2482
Psyr_2483: Psyr_2483 - Acriflavin resistance protein, at 2,880,776 to 2,883,886
_2483
Psyr_2484: Psyr_2484 - Acriflavin resistance protein, at 2,883,883 to 2,886,990
_2484
Position (kb)
2880
2881
2882
2883
2884 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 2879.799 kb on + strand, within Psyr_2482 at 2879.800 kb on - strand, within Psyr_2482 at 2879.891 kb on + strand, within Psyr_2482 at 2880.018 kb on + strand, within Psyr_2482 at 2880.019 kb on - strand, within Psyr_2482 at 2880.425 kb on + strand, within Psyr_2482 at 2880.427 kb on + strand, within Psyr_2482 at 2880.427 kb on + strand, within Psyr_2482 at 2880.428 kb on - strand, within Psyr_2482 at 2880.428 kb on - strand, within Psyr_2482 at 2880.428 kb on - strand, within Psyr_2482 at 2880.511 kb on - strand, within Psyr_2482 at 2880.775 kb on + strand at 2880.775 kb on + strand at 2880.775 kb on + strand at 2880.775 kb on - strand at 2880.776 kb on - strand at 2880.776 kb on - strand at 2880.776 kb on - strand at 2880.776 kb on - strand at 2880.860 kb on + strand at 2880.862 kb on + strand at 2880.863 kb on - strand at 2881.048 kb on + strand at 2881.048 kb on + strand at 2881.160 kb on + strand, within Psyr_2483 at 2881.259 kb on - strand, within Psyr_2483 at 2881.496 kb on + strand, within Psyr_2483 at 2881.887 kb on + strand, within Psyr_2483 at 2881.907 kb on + strand, within Psyr_2483 at 2881.908 kb on - strand, within Psyr_2483 at 2881.908 kb on - strand, within Psyr_2483 at 2882.324 kb on + strand, within Psyr_2483 at 2882.411 kb on + strand, within Psyr_2483 at 2882.411 kb on + strand, within Psyr_2483 at 2882.411 kb on + strand, within Psyr_2483 at 2882.411 kb on + strand, within Psyr_2483 at 2882.411 kb on + strand, within Psyr_2483 at 2882.412 kb on - strand, within Psyr_2483 at 2882.412 kb on - strand, within Psyr_2483 at 2882.573 kb on + strand, within Psyr_2483 at 2882.573 kb on + strand, within Psyr_2483 at 2882.574 kb on - strand, within Psyr_2483 at 2882.906 kb on + strand, within Psyr_2483 at 2882.907 kb on - strand, within Psyr_2483 at 2883.011 kb on + strand, within Psyr_2483 at 2883.011 kb on + strand, within Psyr_2483 at 2883.011 kb on + strand, within Psyr_2483 at 2883.011 kb on + strand, within Psyr_2483 at 2883.011 kb on + strand, within Psyr_2483 at 2883.011 kb on + strand, within Psyr_2483 at 2883.011 kb on + strand, within Psyr_2483 at 2883.011 kb on + strand, within Psyr_2483 at 2883.012 kb on - strand, within Psyr_2483 at 2883.012 kb on - strand, within Psyr_2483 at 2883.012 kb on - strand, within Psyr_2483 at 2883.012 kb on - strand, within Psyr_2483 at 2883.012 kb on - strand, within Psyr_2483 at 2883.012 kb on - strand, within Psyr_2483 at 2883.383 kb on + strand, within Psyr_2483 at 2883.383 kb on + strand, within Psyr_2483 at 2883.383 kb on + strand, within Psyr_2483 at 2883.383 kb on + strand, within Psyr_2483 at 2883.383 kb on + strand, within Psyr_2483 at 2883.383 kb on + strand, within Psyr_2483 at 2883.383 kb on + strand, within Psyr_2483 at 2883.383 kb on + strand at 2883.383 kb on + strand, within Psyr_2483 at 2883.384 kb on - strand, within Psyr_2483 at 2883.384 kb on - strand, within Psyr_2483 at 2883.384 kb on - strand, within Psyr_2483 at 2883.384 kb on - strand, within Psyr_2483 at 2883.384 kb on - strand, within Psyr_2483 at 2883.384 kb on - strand, within Psyr_2483 at 2883.384 kb on - strand, within Psyr_2483 at 2883.384 kb on - strand, within Psyr_2483 at 2883.384 kb on - strand, within Psyr_2483 at 2883.384 kb on - strand, within Psyr_2483 at 2883.405 kb on - strand, within Psyr_2483 at 2883.413 kb on + strand, within Psyr_2483 at 2883.413 kb on + strand, within Psyr_2483 at 2883.413 kb on + strand, within Psyr_2483 at 2883.413 kb on + strand, within Psyr_2483 at 2883.414 kb on - strand, within Psyr_2483 at 2883.414 kb on - strand, within Psyr_2483 at 2883.414 kb on - strand, within Psyr_2483 at 2883.414 kb on - strand, within Psyr_2483 at 2883.414 kb on - strand, within Psyr_2483 at 2883.414 kb on - strand, within Psyr_2483 at 2883.414 kb on - strand, within Psyr_2483 at 2883.414 kb on - strand, within Psyr_2483 at 2883.414 kb on - strand, within Psyr_2483 at 2883.414 kb on - strand, within Psyr_2483 at 2883.414 kb on - strand, within Psyr_2483 at 2883.623 kb on + strand at 2883.624 kb on - strand at 2883.624 kb on - strand at 2883.806 kb on + strand at 2883.807 kb on - strand at 2883.807 kb on - strand at 2883.807 kb on - strand at 2883.812 kb on + strand at 2883.812 kb on + strand at 2883.813 kb on - strand at 2884.267 kb on + strand, within Psyr_2484 at 2884.268 kb on - strand, within Psyr_2484 at 2884.268 kb on - strand, within Psyr_2484 at 2884.346 kb on - strand, within Psyr_2484 at 2884.520 kb on + strand, within Psyr_2484 at 2884.520 kb on + strand, within Psyr_2484 at 2884.520 kb on + strand, within Psyr_2484 at 2884.521 kb on - strand, within Psyr_2484 at 2884.557 kb on + strand, within Psyr_2484 at 2884.557 kb on + strand, within Psyr_2484 at 2884.558 kb on - strand, within Psyr_2484 at 2884.603 kb on + strand, within Psyr_2484 at 2884.624 kb on + strand, within Psyr_2484 at 2884.706 kb on - strand, within Psyr_2484 at 2884.706 kb on - strand, within Psyr_2484 at 2884.706 kb on - strand, within Psyr_2484
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Rifampicin 0.1 mg/ml remove 2,879,799 + Psyr_2482 0.25 -2.0 2,879,800 - Psyr_2482 0.25 -0.1 2,879,891 + Psyr_2482 0.32 -2.6 2,880,018 + Psyr_2482 0.42 -2.3 2,880,019 - Psyr_2482 0.42 +0.1 2,880,425 + Psyr_2482 0.73 -1.1 2,880,427 + Psyr_2482 0.73 -1.6 2,880,427 + Psyr_2482 0.73 -1.2 2,880,428 - Psyr_2482 0.73 -1.1 2,880,428 - Psyr_2482 0.73 -2.2 2,880,428 - Psyr_2482 0.73 -0.5 2,880,511 - Psyr_2482 0.79 -2.1 2,880,775 + -1.5 2,880,775 + -2.7 2,880,775 + -0.5 2,880,775 - -0.5 2,880,776 - -2.7 2,880,776 - -4.0 2,880,776 - -3.0 2,880,776 - -1.3 2,880,860 + -3.6 2,880,862 + -1.1 2,880,863 - -2.5 2,881,048 + -2.1 2,881,048 + -1.7 2,881,160 + Psyr_2483 0.12 -2.1 2,881,259 - Psyr_2483 0.16 -3.6 2,881,496 + Psyr_2483 0.23 -1.4 2,881,887 + Psyr_2483 0.36 -0.8 2,881,907 + Psyr_2483 0.36 -0.8 2,881,908 - Psyr_2483 0.36 -4.0 2,881,908 - Psyr_2483 0.36 -3.5 2,882,324 + Psyr_2483 0.50 -3.0 2,882,411 + Psyr_2483 0.53 -1.9 2,882,411 + Psyr_2483 0.53 -2.1 2,882,411 + Psyr_2483 0.53 -1.8 2,882,411 + Psyr_2483 0.53 -2.1 2,882,411 + Psyr_2483 0.53 -3.7 2,882,412 - Psyr_2483 0.53 -3.1 2,882,412 - Psyr_2483 0.53 -0.9 2,882,573 + Psyr_2483 0.58 -3.3 2,882,573 + Psyr_2483 0.58 -3.9 2,882,574 - Psyr_2483 0.58 -0.8 2,882,906 + Psyr_2483 0.68 -1.5 2,882,907 - Psyr_2483 0.68 -1.1 2,883,011 + Psyr_2483 0.72 -2.7 2,883,011 + Psyr_2483 0.72 -2.0 2,883,011 + Psyr_2483 0.72 +0.5 2,883,011 + Psyr_2483 0.72 -0.9 2,883,011 + Psyr_2483 0.72 -0.9 2,883,011 + Psyr_2483 0.72 -3.1 2,883,011 + Psyr_2483 0.72 -3.8 2,883,011 + Psyr_2483 0.72 -0.8 2,883,012 - Psyr_2483 0.72 -1.5 2,883,012 - Psyr_2483 0.72 -0.3 2,883,012 - Psyr_2483 0.72 +0.5 2,883,012 - Psyr_2483 0.72 -0.5 2,883,012 - Psyr_2483 0.72 -3.5 2,883,012 - Psyr_2483 0.72 -1.8 2,883,383 + Psyr_2483 0.84 -2.6 2,883,383 + Psyr_2483 0.84 -3.2 2,883,383 + Psyr_2483 0.84 +1.5 2,883,383 + Psyr_2483 0.84 -2.7 2,883,383 + Psyr_2483 0.84 -4.1 2,883,383 + Psyr_2483 0.84 -2.7 2,883,383 + Psyr_2483 0.84 -2.7 2,883,383 + +1.5 2,883,383 + Psyr_2483 0.84 -1.4 2,883,384 - Psyr_2483 0.84 -2.1 2,883,384 - Psyr_2483 0.84 -2.8 2,883,384 - Psyr_2483 0.84 -3.1 2,883,384 - Psyr_2483 0.84 -3.2 2,883,384 - Psyr_2483 0.84 -2.8 2,883,384 - Psyr_2483 0.84 -0.9 2,883,384 - Psyr_2483 0.84 -1.1 2,883,384 - Psyr_2483 0.84 +0.1 2,883,384 - Psyr_2483 0.84 -0.5 2,883,384 - Psyr_2483 0.84 -2.1 2,883,405 - Psyr_2483 0.85 -3.0 2,883,413 + Psyr_2483 0.85 -2.1 2,883,413 + Psyr_2483 0.85 -1.1 2,883,413 + Psyr_2483 0.85 -2.8 2,883,413 + Psyr_2483 0.85 -3.2 2,883,414 - Psyr_2483 0.85 -2.3 2,883,414 - Psyr_2483 0.85 -2.0 2,883,414 - Psyr_2483 0.85 -2.1 2,883,414 - Psyr_2483 0.85 -2.7 2,883,414 - Psyr_2483 0.85 -1.1 2,883,414 - Psyr_2483 0.85 -3.0 2,883,414 - Psyr_2483 0.85 -3.5 2,883,414 - Psyr_2483 0.85 -2.3 2,883,414 - Psyr_2483 0.85 -2.5 2,883,414 - Psyr_2483 0.85 -1.2 2,883,414 - Psyr_2483 0.85 -2.4 2,883,623 + -2.9 2,883,624 - -4.3 2,883,624 - -3.4 2,883,806 + -3.2 2,883,807 - -2.5 2,883,807 - -1.8 2,883,807 - +0.5 2,883,812 + -1.8 2,883,812 + -2.8 2,883,813 - +0.1 2,884,267 + Psyr_2484 0.12 -3.4 2,884,268 - Psyr_2484 0.12 -1.1 2,884,268 - Psyr_2484 0.12 -3.7 2,884,346 - Psyr_2484 0.15 -2.7 2,884,520 + Psyr_2484 0.20 -2.5 2,884,520 + Psyr_2484 0.20 -3.0 2,884,520 + Psyr_2484 0.20 -3.1 2,884,521 - Psyr_2484 0.21 -2.7 2,884,557 + Psyr_2484 0.22 -0.2 2,884,557 + Psyr_2484 0.22 -1.2 2,884,558 - Psyr_2484 0.22 -0.5 2,884,603 + Psyr_2484 0.23 -2.1 2,884,624 + Psyr_2484 0.24 -2.2 2,884,706 - Psyr_2484 0.26 -2.5 2,884,706 - Psyr_2484 0.26 -2.7 2,884,706 - Psyr_2484 0.26 +1.1
Or see this region's nucleotide sequence