Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2483

Experiment: KB with Rifampicin 0.1 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Rifampicin 0.1 mg/ml
2,879,799	+		Psyr_2482	0.25	-2.0
2,879,800	-		Psyr_2482	0.25	-0.1
2,879,891	+		Psyr_2482	0.32	-2.6
2,880,018	+		Psyr_2482	0.42	-2.3
2,880,019	-		Psyr_2482	0.42	+0.1
2,880,425	+		Psyr_2482	0.73	-1.1
2,880,427	+		Psyr_2482	0.73	-1.6
2,880,427	+		Psyr_2482	0.73	-1.2
2,880,428	-		Psyr_2482	0.73	-1.1
2,880,428	-		Psyr_2482	0.73	-2.2
2,880,428	-		Psyr_2482	0.73	-0.5
2,880,511	-		Psyr_2482	0.79	-2.1
2,880,775	+				-1.5
2,880,775	+				-2.7
2,880,775	+				-0.5
2,880,775	-				-0.5
2,880,776	-				-2.7
2,880,776	-				-4.0
2,880,776	-				-3.0
2,880,776	-				-1.3
2,880,860	+				-3.6
2,880,862	+				-1.1
2,880,863	-				-2.5
2,881,048	+				-2.1
2,881,048	+				-1.7
2,881,160	+		Psyr_2483	0.12	-2.1
2,881,259	-		Psyr_2483	0.16	-3.6
2,881,496	+		Psyr_2483	0.23	-1.4
2,881,887	+		Psyr_2483	0.36	-0.8
2,881,907	+		Psyr_2483	0.36	-0.8
2,881,908	-		Psyr_2483	0.36	-4.0
2,881,908	-		Psyr_2483	0.36	-3.5
2,882,324	+		Psyr_2483	0.50	-3.0
2,882,411	+		Psyr_2483	0.53	-1.9
2,882,411	+		Psyr_2483	0.53	-2.1
2,882,411	+		Psyr_2483	0.53	-1.8
2,882,411	+		Psyr_2483	0.53	-2.1
2,882,411	+		Psyr_2483	0.53	-3.7
2,882,412	-		Psyr_2483	0.53	-3.1
2,882,412	-		Psyr_2483	0.53	-0.9
2,882,573	+		Psyr_2483	0.58	-3.3
2,882,573	+		Psyr_2483	0.58	-3.9
2,882,574	-		Psyr_2483	0.58	-0.8
2,882,906	+		Psyr_2483	0.68	-1.5
2,882,907	-		Psyr_2483	0.68	-1.1
2,883,011	+		Psyr_2483	0.72	-2.7
2,883,011	+		Psyr_2483	0.72	-2.0
2,883,011	+		Psyr_2483	0.72	+0.5
2,883,011	+		Psyr_2483	0.72	-0.9
2,883,011	+		Psyr_2483	0.72	-0.9
2,883,011	+		Psyr_2483	0.72	-3.1
2,883,011	+		Psyr_2483	0.72	-3.8
2,883,011	+		Psyr_2483	0.72	-0.8
2,883,012	-		Psyr_2483	0.72	-1.5
2,883,012	-		Psyr_2483	0.72	-0.3
2,883,012	-		Psyr_2483	0.72	+0.5
2,883,012	-		Psyr_2483	0.72	-0.5
2,883,012	-		Psyr_2483	0.72	-3.5
2,883,012	-		Psyr_2483	0.72	-1.8
2,883,383	+		Psyr_2483	0.84	-2.6
2,883,383	+		Psyr_2483	0.84	-3.2
2,883,383	+		Psyr_2483	0.84	+1.5
2,883,383	+		Psyr_2483	0.84	-2.7
2,883,383	+		Psyr_2483	0.84	-4.1
2,883,383	+		Psyr_2483	0.84	-2.7
2,883,383	+		Psyr_2483	0.84	-2.7
2,883,383	+				+1.5
2,883,383	+		Psyr_2483	0.84	-1.4
2,883,384	-		Psyr_2483	0.84	-2.1
2,883,384	-		Psyr_2483	0.84	-2.8
2,883,384	-		Psyr_2483	0.84	-3.1
2,883,384	-		Psyr_2483	0.84	-3.2
2,883,384	-		Psyr_2483	0.84	-2.8
2,883,384	-		Psyr_2483	0.84	-0.9
2,883,384	-		Psyr_2483	0.84	-1.1
2,883,384	-		Psyr_2483	0.84	+0.1
2,883,384	-		Psyr_2483	0.84	-0.5
2,883,384	-		Psyr_2483	0.84	-2.1
2,883,405	-		Psyr_2483	0.85	-3.0
2,883,413	+		Psyr_2483	0.85	-2.1
2,883,413	+		Psyr_2483	0.85	-1.1
2,883,413	+		Psyr_2483	0.85	-2.8
2,883,413	+		Psyr_2483	0.85	-3.2
2,883,414	-		Psyr_2483	0.85	-2.3
2,883,414	-		Psyr_2483	0.85	-2.0
2,883,414	-		Psyr_2483	0.85	-2.1
2,883,414	-		Psyr_2483	0.85	-2.7
2,883,414	-		Psyr_2483	0.85	-1.1
2,883,414	-		Psyr_2483	0.85	-3.0
2,883,414	-		Psyr_2483	0.85	-3.5
2,883,414	-		Psyr_2483	0.85	-2.3
2,883,414	-		Psyr_2483	0.85	-2.5
2,883,414	-		Psyr_2483	0.85	-1.2
2,883,414	-		Psyr_2483	0.85	-2.4
2,883,623	+				-2.9
2,883,624	-				-4.3
2,883,624	-				-3.4
2,883,806	+				-3.2
2,883,807	-				-2.5
2,883,807	-				-1.8
2,883,807	-				+0.5
2,883,812	+				-1.8
2,883,812	+				-2.8
2,883,813	-				+0.1
2,884,267	+		Psyr_2484	0.12	-3.4
2,884,268	-		Psyr_2484	0.12	-1.1
2,884,268	-		Psyr_2484	0.12	-3.7
2,884,346	-		Psyr_2484	0.15	-2.7
2,884,520	+		Psyr_2484	0.20	-2.5
2,884,520	+		Psyr_2484	0.20	-3.0
2,884,520	+		Psyr_2484	0.20	-3.1
2,884,521	-		Psyr_2484	0.21	-2.7
2,884,557	+		Psyr_2484	0.22	-0.2
2,884,557	+		Psyr_2484	0.22	-1.2
2,884,558	-		Psyr_2484	0.22	-0.5
2,884,603	+		Psyr_2484	0.23	-2.1
2,884,624	+		Psyr_2484	0.24	-2.2
2,884,706	-		Psyr_2484	0.26	-2.5
2,884,706	-		Psyr_2484	0.26	-2.7
2,884,706	-		Psyr_2484	0.26	+1.1