Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2481

Experiment: KB with Rifampicin 0.1 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Rifampicin 0.1 mg/ml
2,877,965	+		Psyr_2480	0.17	+1.5
2,878,006	-		Psyr_2480	0.21	-0.5
2,878,006	-		Psyr_2480	0.21	-1.0
2,878,006	-		Psyr_2480	0.21	-2.3
2,878,008	+		Psyr_2480	0.21	+0.5
2,878,008	+				+4.5
2,878,305	-		Psyr_2480	0.54	-0.3
2,878,305	-		Psyr_2480	0.54	-0.5
2,878,323	+		Psyr_2480	0.56	+0.6
2,878,414	-		Psyr_2480	0.65	-0.5
2,878,495	-		Psyr_2480	0.74	-3.4
2,878,495	-		Psyr_2480	0.74	-2.8
2,878,706	+				+1.7
2,878,754	+				+0.3
2,878,754	+				+1.4
2,878,754	+				+1.3
2,878,755	-				-3.3
2,878,755	-				-4.1
2,878,964	-		Psyr_2481	0.29	-3.2
2,878,988	+		Psyr_2481	0.33	-0.8
2,879,011	+		Psyr_2481	0.38	-0.3
2,879,015	+		Psyr_2481	0.39	-0.1
2,879,016	-		Psyr_2481	0.39	-3.8
2,879,016	-		Psyr_2481	0.39	-2.3
2,879,016	-		Psyr_2481	0.39	-2.5
2,879,169	+		Psyr_2481	0.69	+1.8
2,879,170	-		Psyr_2481	0.70	-2.4
2,879,170	-		Psyr_2481	0.70	-1.1
2,879,292	+				+1.0
2,879,293	-				+2.3
2,879,293	-				-2.5
2,879,319	+				-0.5
2,879,320	-				-2.3
2,879,334	+				-0.3
2,879,334	+				-0.1
2,879,335	-				-1.5
2,879,335	-				-0.7
2,879,335	-				-1.3
2,879,335	-				-2.3
2,879,335	-				-2.8
2,879,336	+				-0.7
2,879,382	+				-0.1
2,879,425	+				-1.1
2,879,425	+				+0.2
2,879,430	+				+0.3
2,879,430	+				-0.2
2,879,430	+				-0.2
2,879,431	-				-2.8
2,879,431	-				-3.4
2,879,431	-				-2.8
2,879,440	+				+0.5
2,879,441	-				-2.1
2,879,485	+				-2.8
2,879,485	+				-2.8
2,879,485	+				-1.5
2,879,718	+		Psyr_2482	0.19	-3.0
2,879,718	+		Psyr_2482	0.19	-2.2
2,879,719	-		Psyr_2482	0.19	+0.5
2,879,719	-		Psyr_2482	0.19	-1.0
2,879,719	-		Psyr_2482	0.19	-1.1
2,879,719	-		Psyr_2482	0.19	-3.1
2,879,722	-		Psyr_2482	0.19	-1.4
2,879,799	+		Psyr_2482	0.25	-2.0
2,879,800	-		Psyr_2482	0.25	-0.1
2,879,891	+		Psyr_2482	0.32	-2.6
2,880,018	+		Psyr_2482	0.42	-2.3
2,880,019	-		Psyr_2482	0.42	+0.1