Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2221

Experiment: KB with Rifampicin 0.1 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Rifampicin 0.1 mg/ml
2,580,836	+		Psyr_2220	0.60	+0.7
2,580,836	+		Psyr_2220	0.60	-0.5
2,580,836	+		Psyr_2220	0.60	-0.1
2,580,836	+		Psyr_2220	0.60	+1.5
2,580,836	+		Psyr_2220	0.60	-0.7
2,580,837	-		Psyr_2220	0.60	+0.5
2,581,115	-		Psyr_2220	0.74	-2.8
2,581,137	-		Psyr_2220	0.75	-0.5
2,581,139	+		Psyr_2220	0.75	-1.0
2,581,139	+		Psyr_2220	0.75	+1.3
2,581,140	-		Psyr_2220	0.75	-0.1
2,581,140	-		Psyr_2220	0.75	-0.1
2,581,140	-		Psyr_2220	0.75	+0.2
2,581,188	-		Psyr_2220	0.78	-2.7
2,581,211	+		Psyr_2220	0.79	+0.3
2,581,212	-		Psyr_2220	0.79	+0.8
2,581,247	+		Psyr_2220	0.81	-0.1
2,581,247	+		Psyr_2220	0.81	-1.0
2,581,248	-		Psyr_2220	0.81	+0.3
2,581,248	-		Psyr_2220	0.81	+0.9
2,581,248	-		Psyr_2220	0.81	-0.1
2,581,248	-		Psyr_2220	0.81	-0.4
2,581,248	-		Psyr_2220	0.81	+0.5
2,581,269	-		Psyr_2220	0.82	-0.2
2,581,277	+		Psyr_2220	0.82	+1.4
2,581,277	+		Psyr_2220	0.82	-0.1
2,581,278	-		Psyr_2220	0.82	-0.1
2,581,278	-		Psyr_2220	0.82	+1.4
2,581,278	-		Psyr_2220	0.82	+0.4
2,581,370	+		Psyr_2220	0.87	+0.5
2,581,370	+		Psyr_2220	0.87	-0.9
2,581,370	+		Psyr_2220	0.87	+0.5
2,581,370	+		Psyr_2220	0.87	+0.1
2,581,370	+		Psyr_2220	0.87	+0.5
2,581,371	-		Psyr_2220	0.87	-0.8
2,581,371	-		Psyr_2220	0.87	+0.8
2,581,371	-		Psyr_2220	0.87	-1.6
2,581,371	-		Psyr_2220	0.87	-0.9
2,581,421	+		Psyr_2220	0.90	-0.4
2,581,421	+		Psyr_2220	0.90	-0.5
2,581,421	+		Psyr_2220	0.90	-0.2
2,581,422	-		Psyr_2220	0.90	-1.5
2,581,422	-		Psyr_2220	0.90	+1.1
2,581,422	-		Psyr_2220	0.90	+0.8
2,581,438	-				-2.5
2,581,559	-				-1.1
2,581,559	-				-0.6
2,581,562	-				-0.2
2,581,668	+				-0.1
2,581,709	-				-0.3
2,581,709	-				-0.2
2,581,715	+				+1.2
2,581,735	+				-1.1
2,581,736	-				+0.7
2,581,821	+				-1.3
2,581,835	+				-0.8
2,581,835	+				-0.7
2,581,835	+				+0.8
2,581,835	+				+0.3
2,581,835	+				+0.9
2,581,836	-				-1.8
2,581,836	-				-0.2
2,581,836	-				+1.1
2,581,836	-				-0.9
2,581,836	-				-1.5
2,581,836	-				+0.3
2,581,840	-				-0.7
2,581,887	+				+1.0
2,581,887	+				-1.5
2,581,887	+				+0.0
2,581,887	+				+0.1
2,581,888	-				-0.8
2,581,888	-				+0.6
2,582,109	+		Psyr_2221	0.48	+2.5
2,582,194	-		Psyr_2221	0.63	+0.6
2,582,354	+				-0.5
2,582,535	+				+0.3
2,582,828	+		Psyr_2222	0.14	+0.6
2,582,828	+		Psyr_2222	0.14	-0.1
2,582,828	+		Psyr_2222	0.14	-1.5
2,583,016	-		Psyr_2222	0.21	+0.8
2,583,174	+		Psyr_2222	0.26	+1.7
2,583,175	-		Psyr_2222	0.26	-1.7
2,583,210	+		Psyr_2222	0.28	-0.9
2,583,210	+		Psyr_2222	0.28	+1.2
2,583,211	-		Psyr_2222	0.28	+0.5
2,583,327	+		Psyr_2222	0.32	-1.4
2,583,327	+		Psyr_2222	0.32	+0.7
2,583,328	-		Psyr_2222	0.32	-1.1