Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2216
Experiment: KB with Rifampicin 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | KB with Rifampicin 0.1 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,576,364 | + | Psyr_2215 | 0.63 | -0.1 | |
2,576,376 | + | Psyr_2215 | 0.64 | +2.3 | |
2,576,945 | + | -1.2 | |||
2,576,946 | - | -1.1 | |||
2,577,625 | + | +0.8 | |||
2,577,625 | + | -0.8 | |||
2,577,625 | + | -0.9 | |||
2,577,625 | + | -0.7 | |||
2,577,626 | - | +2.8 | |||
2,577,626 | - | -0.7 | |||
2,577,637 | + | -0.2 | |||
2,578,075 | + | Psyr_2218 | 0.41 | -0.2 | |
2,578,076 | - | Psyr_2218 | 0.42 | +0.5 | |
2,578,076 | - | Psyr_2218 | 0.42 | -0.6 | |
2,578,079 | + | Psyr_2218 | 0.42 | -0.3 | |
2,578,079 | + | Psyr_2218 | 0.42 | -1.1 | |
2,578,079 | + | Psyr_2218 | 0.42 | -0.2 | |
2,578,079 | + | Psyr_2218 | 0.42 | +0.3 |
Or see this region's nucleotide sequence