Experiment: KB with Rifampicin 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_2087 and Psyr_2088 are separated by 136 nucleotides Psyr_2088 and Psyr_2089 are separated by 30 nucleotides
Psyr_2087: Psyr_2087 - aconitase / 2-methylcitrate dehydratase (trans-methylaconitate-forming), at 2,432,642 to 2,435,230
_2087
Psyr_2088: Psyr_2088 - 2-methylaconitate cis-trans isomerase, at 2,435,367 to 2,436,557
_2088
Psyr_2089: Psyr_2089 - Protein of unknown function DUF299, at 2,436,588 to 2,437,406
_2089
Position (kb)
2435
2436
2437 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2434.382 kb on + strand, within Psyr_2087 at 2434.382 kb on + strand, within Psyr_2087 at 2434.382 kb on + strand, within Psyr_2087 at 2434.383 kb on - strand, within Psyr_2087 at 2434.383 kb on - strand, within Psyr_2087 at 2434.383 kb on - strand, within Psyr_2087 at 2434.383 kb on - strand, within Psyr_2087 at 2434.383 kb on - strand, within Psyr_2087 at 2434.383 kb on - strand, within Psyr_2087 at 2434.383 kb on - strand, within Psyr_2087 at 2434.383 kb on - strand, within Psyr_2087 at 2434.383 kb on - strand, within Psyr_2087 at 2434.383 kb on - strand, within Psyr_2087 at 2434.383 kb on - strand, within Psyr_2087 at 2434.460 kb on + strand, within Psyr_2087 at 2434.460 kb on + strand, within Psyr_2087 at 2434.461 kb on - strand, within Psyr_2087 at 2434.461 kb on - strand, within Psyr_2087 at 2434.817 kb on + strand, within Psyr_2087 at 2434.818 kb on - strand, within Psyr_2087 at 2434.818 kb on - strand, within Psyr_2087 at 2434.818 kb on - strand, within Psyr_2087 at 2434.818 kb on - strand, within Psyr_2087 at 2434.818 kb on - strand, within Psyr_2087 at 2435.164 kb on + strand at 2435.164 kb on + strand at 2435.164 kb on + strand at 2435.164 kb on + strand at 2435.165 kb on - strand at 2435.168 kb on + strand at 2435.168 kb on + strand at 2435.228 kb on + strand at 2435.228 kb on + strand at 2435.228 kb on + strand at 2435.228 kb on + strand at 2435.228 kb on + strand at 2435.229 kb on - strand at 2435.229 kb on - strand at 2435.229 kb on - strand at 2435.229 kb on - strand at 2435.232 kb on + strand at 2435.232 kb on + strand at 2435.233 kb on - strand at 2435.274 kb on - strand at 2435.403 kb on + strand at 2435.403 kb on + strand at 2435.403 kb on + strand at 2435.403 kb on + strand at 2435.403 kb on + strand at 2435.403 kb on + strand at 2435.403 kb on + strand at 2435.404 kb on - strand at 2435.404 kb on - strand at 2435.404 kb on - strand at 2435.404 kb on - strand at 2435.404 kb on - strand at 2435.404 kb on - strand at 2435.404 kb on - strand at 2435.404 kb on - strand at 2435.404 kb on - strand at 2435.404 kb on - strand at 2435.622 kb on + strand, within Psyr_2088 at 2435.623 kb on - strand, within Psyr_2088 at 2436.228 kb on + strand, within Psyr_2088 at 2436.589 kb on + strand at 2436.590 kb on - strand at 2436.881 kb on - strand, within Psyr_2089 at 2436.916 kb on + strand, within Psyr_2089 at 2436.916 kb on + strand, within Psyr_2089 at 2436.916 kb on + strand, within Psyr_2089 at 2436.916 kb on + strand, within Psyr_2089 at 2436.916 kb on + strand, within Psyr_2089 at 2436.916 kb on + strand, within Psyr_2089 at 2436.917 kb on - strand, within Psyr_2089 at 2436.917 kb on - strand, within Psyr_2089 at 2436.917 kb on - strand, within Psyr_2089 at 2436.917 kb on - strand, within Psyr_2089 at 2436.917 kb on - strand, within Psyr_2089 at 2436.917 kb on - strand, within Psyr_2089 at 2436.979 kb on + strand, within Psyr_2089 at 2436.980 kb on - strand, within Psyr_2089 at 2436.980 kb on - strand, within Psyr_2089 at 2436.982 kb on + strand, within Psyr_2089 at 2436.983 kb on - strand, within Psyr_2089 at 2437.045 kb on + strand, within Psyr_2089 at 2437.046 kb on - strand, within Psyr_2089 at 2437.046 kb on - strand, within Psyr_2089 at 2437.055 kb on + strand, within Psyr_2089 at 2437.055 kb on + strand, within Psyr_2089 at 2437.055 kb on + strand, within Psyr_2089 at 2437.087 kb on + strand, within Psyr_2089 at 2437.103 kb on + strand, within Psyr_2089 at 2437.103 kb on + strand, within Psyr_2089 at 2437.103 kb on + strand, within Psyr_2089 at 2437.103 kb on + strand, within Psyr_2089 at 2437.103 kb on + strand, within Psyr_2089 at 2437.104 kb on - strand, within Psyr_2089 at 2437.104 kb on - strand, within Psyr_2089 at 2437.104 kb on - strand, within Psyr_2089 at 2437.104 kb on - strand, within Psyr_2089 at 2437.257 kb on + strand, within Psyr_2089 at 2437.291 kb on + strand, within Psyr_2089 at 2437.291 kb on + strand, within Psyr_2089 at 2437.292 kb on - strand, within Psyr_2089 at 2437.292 kb on - strand, within Psyr_2089 at 2437.316 kb on + strand, within Psyr_2089 at 2437.316 kb on + strand, within Psyr_2089 at 2437.449 kb on + strand at 2437.449 kb on + strand at 2437.449 kb on + strand at 2437.449 kb on + strand at 2437.450 kb on - strand at 2437.450 kb on - strand at 2437.450 kb on - strand at 2437.450 kb on - strand at 2437.536 kb on - strand at 2437.536 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Rifampicin 0.1 mg/ml remove 2,434,382 + Psyr_2087 0.67 +0.3 2,434,382 + Psyr_2087 0.67 -1.6 2,434,382 + Psyr_2087 0.67 -0.1 2,434,383 - Psyr_2087 0.67 -1.2 2,434,383 - Psyr_2087 0.67 -0.1 2,434,383 - Psyr_2087 0.67 -1.2 2,434,383 - Psyr_2087 0.67 -1.3 2,434,383 - Psyr_2087 0.67 -0.6 2,434,383 - Psyr_2087 0.67 +0.7 2,434,383 - Psyr_2087 0.67 -0.2 2,434,383 - Psyr_2087 0.67 +0.0 2,434,383 - Psyr_2087 0.67 +1.6 2,434,383 - Psyr_2087 0.67 -0.8 2,434,383 - Psyr_2087 0.67 -1.2 2,434,460 + Psyr_2087 0.70 -1.7 2,434,460 + Psyr_2087 0.70 -0.4 2,434,461 - Psyr_2087 0.70 +0.1 2,434,461 - Psyr_2087 0.70 +1.4 2,434,817 + Psyr_2087 0.84 +0.2 2,434,818 - Psyr_2087 0.84 +0.7 2,434,818 - Psyr_2087 0.84 +1.7 2,434,818 - Psyr_2087 0.84 +0.3 2,434,818 - Psyr_2087 0.84 -0.0 2,434,818 - Psyr_2087 0.84 +0.1 2,435,164 + +0.4 2,435,164 + +0.3 2,435,164 + -1.3 2,435,164 + +0.4 2,435,165 - +0.9 2,435,168 + +0.9 2,435,168 + -1.4 2,435,228 + +0.3 2,435,228 + -1.1 2,435,228 + +0.2 2,435,228 + -0.3 2,435,228 + -0.2 2,435,229 - -3.3 2,435,229 - -2.7 2,435,229 - -0.9 2,435,229 - -1.3 2,435,232 + -0.2 2,435,232 + -0.1 2,435,233 - -0.3 2,435,274 - -0.9 2,435,403 + +0.1 2,435,403 + +0.5 2,435,403 + +1.4 2,435,403 + -0.2 2,435,403 + -0.2 2,435,403 + -2.4 2,435,403 + -1.1 2,435,404 - -2.4 2,435,404 - +1.0 2,435,404 - -1.6 2,435,404 - +0.8 2,435,404 - +1.3 2,435,404 - -0.9 2,435,404 - +0.3 2,435,404 - +0.3 2,435,404 - -0.8 2,435,404 - -0.3 2,435,622 + Psyr_2088 0.21 -0.2 2,435,623 - Psyr_2088 0.21 -0.9 2,436,228 + Psyr_2088 0.72 -0.9 2,436,589 + +0.2 2,436,590 - -2.0 2,436,881 - Psyr_2089 0.36 -1.3 2,436,916 + Psyr_2089 0.40 +1.8 2,436,916 + Psyr_2089 0.40 +0.6 2,436,916 + Psyr_2089 0.40 -1.3 2,436,916 + Psyr_2089 0.40 -1.1 2,436,916 + Psyr_2089 0.40 +0.6 2,436,916 + Psyr_2089 0.40 +1.0 2,436,917 - Psyr_2089 0.40 +0.7 2,436,917 - Psyr_2089 0.40 -4.0 2,436,917 - Psyr_2089 0.40 +0.3 2,436,917 - Psyr_2089 0.40 -0.9 2,436,917 - Psyr_2089 0.40 +0.4 2,436,917 - Psyr_2089 0.40 +0.9 2,436,979 + Psyr_2089 0.48 -0.9 2,436,980 - Psyr_2089 0.48 -2.6 2,436,980 - Psyr_2089 0.48 +1.8 2,436,982 + Psyr_2089 0.48 +1.1 2,436,983 - Psyr_2089 0.48 +0.1 2,437,045 + Psyr_2089 0.56 +0.9 2,437,046 - Psyr_2089 0.56 +0.1 2,437,046 - Psyr_2089 0.56 +0.9 2,437,055 + Psyr_2089 0.57 +2.0 2,437,055 + Psyr_2089 0.57 -0.4 2,437,055 + Psyr_2089 0.57 -0.7 2,437,087 + Psyr_2089 0.61 +2.2 2,437,103 + Psyr_2089 0.63 +1.4 2,437,103 + Psyr_2089 0.63 -1.0 2,437,103 + Psyr_2089 0.63 +0.4 2,437,103 + Psyr_2089 0.63 -0.8 2,437,103 + Psyr_2089 0.63 -0.6 2,437,104 - Psyr_2089 0.63 +0.6 2,437,104 - Psyr_2089 0.63 -0.4 2,437,104 - Psyr_2089 0.63 +0.2 2,437,104 - Psyr_2089 0.63 +0.3 2,437,257 + Psyr_2089 0.82 -0.1 2,437,291 + Psyr_2089 0.86 -0.7 2,437,291 + Psyr_2089 0.86 +0.4 2,437,292 - Psyr_2089 0.86 -0.8 2,437,292 - Psyr_2089 0.86 +0.1 2,437,316 + Psyr_2089 0.89 +0.1 2,437,316 + Psyr_2089 0.89 -0.1 2,437,449 + -1.1 2,437,449 + +0.9 2,437,449 + -1.0 2,437,449 + +0.3 2,437,450 - +0.0 2,437,450 - -0.6 2,437,450 - -0.9 2,437,450 - +1.2 2,437,536 - +0.4 2,437,536 - +0.8
Or see this region's nucleotide sequence