Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1730

Experiment: KB with Rifampicin 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1728 and Psyr_1729 are separated by 149 nucleotidesPsyr_1729 and Psyr_1730 are separated by 72 nucleotidesPsyr_1730 and Psyr_1731 are separated by 63 nucleotides Psyr_1728: Psyr_1728 - tRNA--hydroxylase, at 1,962,478 to 1,963,089 _1728 Psyr_1729: Psyr_1729 - transcriptional regulator, MarR family, at 1,963,239 to 1,963,727 _1729 Psyr_1730: Psyr_1730 - Secretion protein HlyD, at 1,963,800 to 1,965,008 _1730 Psyr_1731: Psyr_1731 - Drug resistance transporter EmrB/QacA subfamily, at 1,965,072 to 1,966,610 _1731 Position (kb) 1963 1964 1965 1966Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1962.907 kb on + strand, within Psyr_1728at 1962.950 kb on - strand, within Psyr_1728at 1963.073 kb on + strandat 1963.074 kb on - strandat 1963.151 kb on - strandat 1963.153 kb on + strandat 1963.166 kb on - strandat 1963.188 kb on + strandat 1963.198 kb on + strandat 1963.199 kb on - strandat 1963.224 kb on + strandat 1963.224 kb on + strandat 1963.225 kb on - strandat 1963.225 kb on - strandat 1963.225 kb on - strandat 1963.299 kb on - strand, within Psyr_1729at 1963.332 kb on + strand, within Psyr_1729at 1963.333 kb on - strand, within Psyr_1729at 1963.333 kb on - strand, within Psyr_1729at 1963.333 kb on - strand, within Psyr_1729at 1963.344 kb on + strand, within Psyr_1729at 1963.344 kb on + strand, within Psyr_1729at 1963.345 kb on - strand, within Psyr_1729at 1963.351 kb on + strand, within Psyr_1729at 1963.352 kb on - strand, within Psyr_1729at 1963.352 kb on - strand, within Psyr_1729at 1963.719 kb on - strandat 1963.786 kb on + strandat 1963.792 kb on + strandat 1963.932 kb on + strand, within Psyr_1730at 1963.941 kb on + strand, within Psyr_1730at 1963.941 kb on + strand, within Psyr_1730at 1963.942 kb on - strand, within Psyr_1730at 1963.974 kb on + strandat 1963.974 kb on + strand, within Psyr_1730at 1963.974 kb on + strand, within Psyr_1730at 1963.974 kb on + strand, within Psyr_1730at 1963.974 kb on + strand, within Psyr_1730at 1963.974 kb on + strand, within Psyr_1730at 1963.975 kb on - strand, within Psyr_1730at 1963.975 kb on - strand, within Psyr_1730at 1963.975 kb on - strand, within Psyr_1730at 1963.975 kb on - strand, within Psyr_1730at 1963.975 kb on - strand, within Psyr_1730at 1964.030 kb on + strand, within Psyr_1730at 1964.031 kb on - strand, within Psyr_1730at 1964.163 kb on + strand, within Psyr_1730at 1964.165 kb on + strand, within Psyr_1730at 1964.235 kb on + strand, within Psyr_1730at 1964.235 kb on + strand, within Psyr_1730at 1964.235 kb on + strand, within Psyr_1730at 1964.235 kb on + strand, within Psyr_1730at 1964.235 kb on + strand, within Psyr_1730at 1964.235 kb on + strand, within Psyr_1730at 1964.235 kb on + strand, within Psyr_1730at 1964.235 kb on + strand, within Psyr_1730at 1964.235 kb on + strand, within Psyr_1730at 1964.235 kb on + strand, within Psyr_1730at 1964.235 kb on + strand, within Psyr_1730at 1964.236 kb on - strand, within Psyr_1730at 1964.236 kb on - strand, within Psyr_1730at 1964.236 kb on - strand, within Psyr_1730at 1964.236 kb on - strand, within Psyr_1730at 1964.236 kb on - strand, within Psyr_1730at 1964.236 kb on - strand, within Psyr_1730at 1964.236 kb on - strand, within Psyr_1730at 1964.236 kb on - strand, within Psyr_1730at 1964.236 kb on - strand, within Psyr_1730at 1964.236 kb on - strand, within Psyr_1730at 1964.236 kb on - strand, within Psyr_1730at 1964.236 kb on - strand, within Psyr_1730at 1964.236 kb on - strand, within Psyr_1730at 1964.236 kb on - strand, within Psyr_1730at 1964.236 kb on - strand, within Psyr_1730at 1964.236 kb on - strand, within Psyr_1730at 1964.236 kb on - strand, within Psyr_1730at 1964.436 kb on + strand, within Psyr_1730at 1964.643 kb on + strandat 1964.661 kb on + strand, within Psyr_1730at 1964.661 kb on + strand, within Psyr_1730at 1964.661 kb on + strand, within Psyr_1730at 1964.662 kb on - strand, within Psyr_1730at 1964.780 kb on + strand, within Psyr_1730at 1964.780 kb on + strand, within Psyr_1730at 1964.805 kb on + strand, within Psyr_1730at 1964.806 kb on - strand, within Psyr_1730at 1964.916 kb on + strandat 1964.916 kb on + strandat 1964.916 kb on + strandat 1964.917 kb on - strandat 1964.917 kb on - strandat 1964.917 kb on - strandat 1964.917 kb on - strandat 1964.917 kb on - strandat 1965.570 kb on + strand, within Psyr_1731at 1965.570 kb on + strand, within Psyr_1731at 1965.570 kb on + strand, within Psyr_1731at 1965.570 kb on + strand, within Psyr_1731at 1965.570 kb on + strand, within Psyr_1731at 1965.571 kb on - strand, within Psyr_1731at 1965.571 kb on - strand, within Psyr_1731at 1965.571 kb on - strand, within Psyr_1731at 1965.629 kb on - strand, within Psyr_1731at 1965.636 kb on - strand, within Psyr_1731at 1965.684 kb on + strand, within Psyr_1731at 1965.684 kb on + strand, within Psyr_1731at 1965.685 kb on - strand, within Psyr_1731at 1965.685 kb on - strand, within Psyr_1731at 1965.685 kb on - strand, within Psyr_1731at 1965.685 kb on - strand, within Psyr_1731at 1965.685 kb on - strand, within Psyr_1731at 1965.685 kb on - strand, within Psyr_1731at 1965.731 kb on - strand, within Psyr_1731at 1965.746 kb on + strand, within Psyr_1731at 1965.978 kb on + strand, within Psyr_1731at 1965.978 kb on + strand, within Psyr_1731at 1965.979 kb on - strand, within Psyr_1731at 1965.979 kb on - strand, within Psyr_1731

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Rifampicin 0.1 mg/ml
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1,962,907 + Psyr_1728 0.70 +0.8
1,962,950 - Psyr_1728 0.77 +0.4
1,963,073 + +1.5
1,963,074 - +1.1
1,963,151 - +1.5
1,963,153 + +1.1
1,963,166 - -0.2
1,963,188 + -1.0
1,963,198 + -0.4
1,963,199 - +0.5
1,963,224 + -0.4
1,963,224 + -0.4
1,963,225 - -0.0
1,963,225 - -1.2
1,963,225 - +0.1
1,963,299 - Psyr_1729 0.12 -0.3
1,963,332 + Psyr_1729 0.19 +0.5
1,963,333 - Psyr_1729 0.19 +0.4
1,963,333 - Psyr_1729 0.19 -2.2
1,963,333 - Psyr_1729 0.19 +0.9
1,963,344 + Psyr_1729 0.21 -0.3
1,963,344 + Psyr_1729 0.21 +0.3
1,963,345 - Psyr_1729 0.22 -0.7
1,963,351 + Psyr_1729 0.23 +0.3
1,963,352 - Psyr_1729 0.23 -0.1
1,963,352 - Psyr_1729 0.23 +0.8
1,963,719 - -0.9
1,963,786 + +0.3
1,963,792 + -0.6
1,963,932 + Psyr_1730 0.11 -0.6
1,963,941 + Psyr_1730 0.12 +1.0
1,963,941 + Psyr_1730 0.12 -0.5
1,963,942 - Psyr_1730 0.12 +0.2
1,963,974 + -0.5
1,963,974 + Psyr_1730 0.14 +2.0
1,963,974 + Psyr_1730 0.14 -0.5
1,963,974 + Psyr_1730 0.14 +0.5
1,963,974 + Psyr_1730 0.14 +1.2
1,963,974 + Psyr_1730 0.14 +0.5
1,963,975 - Psyr_1730 0.14 +1.1
1,963,975 - Psyr_1730 0.14 -0.8
1,963,975 - Psyr_1730 0.14 +1.1
1,963,975 - Psyr_1730 0.14 -0.5
1,963,975 - Psyr_1730 0.14 +1.5
1,964,030 + Psyr_1730 0.19 -0.9
1,964,031 - Psyr_1730 0.19 +0.7
1,964,163 + Psyr_1730 0.30 -0.5
1,964,165 + Psyr_1730 0.30 +0.9
1,964,235 + Psyr_1730 0.36 -1.0
1,964,235 + Psyr_1730 0.36 +0.3
1,964,235 + Psyr_1730 0.36 -0.3
1,964,235 + Psyr_1730 0.36 -0.1
1,964,235 + Psyr_1730 0.36 -0.5
1,964,235 + Psyr_1730 0.36 +1.1
1,964,235 + Psyr_1730 0.36 +0.1
1,964,235 + Psyr_1730 0.36 -0.2
1,964,235 + Psyr_1730 0.36 -0.8
1,964,235 + Psyr_1730 0.36 +0.7
1,964,235 + Psyr_1730 0.36 +1.4
1,964,236 - Psyr_1730 0.36 -0.7
1,964,236 - Psyr_1730 0.36 +1.0
1,964,236 - Psyr_1730 0.36 +0.2
1,964,236 - Psyr_1730 0.36 -0.4
1,964,236 - Psyr_1730 0.36 -1.0
1,964,236 - Psyr_1730 0.36 +2.0
1,964,236 - Psyr_1730 0.36 -1.6
1,964,236 - Psyr_1730 0.36 -2.9
1,964,236 - Psyr_1730 0.36 +0.7
1,964,236 - Psyr_1730 0.36 +0.1
1,964,236 - Psyr_1730 0.36 -0.3
1,964,236 - Psyr_1730 0.36 -1.0
1,964,236 - Psyr_1730 0.36 +1.5
1,964,236 - Psyr_1730 0.36 +0.3
1,964,236 - Psyr_1730 0.36 +0.3
1,964,236 - Psyr_1730 0.36 +0.1
1,964,236 - Psyr_1730 0.36 +0.9
1,964,436 + Psyr_1730 0.53 +2.1
1,964,643 + +2.1
1,964,661 + Psyr_1730 0.71 +0.5
1,964,661 + Psyr_1730 0.71 -1.5
1,964,661 + Psyr_1730 0.71 +0.3
1,964,662 - Psyr_1730 0.71 -0.2
1,964,780 + Psyr_1730 0.81 +0.4
1,964,780 + Psyr_1730 0.81 +0.2
1,964,805 + Psyr_1730 0.83 +0.5
1,964,806 - Psyr_1730 0.83 +1.6
1,964,916 + -0.6
1,964,916 + +0.0
1,964,916 + -0.1
1,964,917 - +0.1
1,964,917 - -0.7
1,964,917 - -0.5
1,964,917 - +1.2
1,964,917 - +0.0
1,965,570 + Psyr_1731 0.32 -1.8
1,965,570 + Psyr_1731 0.32 +0.1
1,965,570 + Psyr_1731 0.32 +1.2
1,965,570 + Psyr_1731 0.32 +0.0
1,965,570 + Psyr_1731 0.32 -1.0
1,965,571 - Psyr_1731 0.32 +0.1
1,965,571 - Psyr_1731 0.32 -2.5
1,965,571 - Psyr_1731 0.32 +0.1
1,965,629 - Psyr_1731 0.36 -1.5
1,965,636 - Psyr_1731 0.37 -0.1
1,965,684 + Psyr_1731 0.40 -0.7
1,965,684 + Psyr_1731 0.40 -0.2
1,965,685 - Psyr_1731 0.40 -1.4
1,965,685 - Psyr_1731 0.40 +0.5
1,965,685 - Psyr_1731 0.40 +2.9
1,965,685 - Psyr_1731 0.40 -0.2
1,965,685 - Psyr_1731 0.40 +0.5
1,965,685 - Psyr_1731 0.40 +0.9
1,965,731 - Psyr_1731 0.43 +1.0
1,965,746 + Psyr_1731 0.44 -0.6
1,965,978 + Psyr_1731 0.59 -0.7
1,965,978 + Psyr_1731 0.59 -1.3
1,965,979 - Psyr_1731 0.59 -0.9
1,965,979 - Psyr_1731 0.59 -0.6

Or see this region's nucleotide sequence