Experiment: KB with Rifampicin 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_1527 and Psyr_1528 are separated by 2 nucleotides Psyr_1528 and Psyr_1529 are separated by 231 nucleotides Psyr_1529 and Psyr_1530 are separated by 1 nucleotides Psyr_1530 and Psyr_1531 overlap by 4 nucleotides
Psyr_1527: Psyr_1527 - conserved hypothetical protein, at 1,717,367 to 1,719,127
_1527
Psyr_1528: Psyr_1528 - Arc-like DNA binding protein, at 1,719,130 to 1,719,393
_1528
Psyr_1529: Psyr_1529 - hypothetical protein, at 1,719,625 to 1,720,032
_1529
Psyr_1530: Psyr_1530 - hypothetical protein, at 1,720,034 to 1,720,375
_1530
Psyr_1531: Psyr_1531 - replicative DNA helicase (phage and plasmid), at 1,720,372 to 1,721,718
_1531
Position (kb) 1719
1720 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 1718.268 kb on - strand, within Psyr_1527 at 1718.280 kb on + strand, within Psyr_1527 at 1718.280 kb on + strand, within Psyr_1527 at 1718.281 kb on - strand, within Psyr_1527 at 1718.372 kb on + strand, within Psyr_1527 at 1718.372 kb on + strand, within Psyr_1527 at 1718.372 kb on + strand, within Psyr_1527 at 1718.373 kb on - strand, within Psyr_1527 at 1718.373 kb on - strand, within Psyr_1527 at 1718.373 kb on - strand, within Psyr_1527 at 1718.373 kb on - strand, within Psyr_1527 at 1718.373 kb on - strand, within Psyr_1527 at 1718.373 kb on - strand, within Psyr_1527 at 1718.373 kb on - strand, within Psyr_1527 at 1718.373 kb on - strand, within Psyr_1527 at 1718.373 kb on - strand, within Psyr_1527 at 1718.375 kb on + strand, within Psyr_1527 at 1718.375 kb on + strand, within Psyr_1527 at 1718.375 kb on + strand, within Psyr_1527 at 1718.375 kb on + strand, within Psyr_1527 at 1718.375 kb on + strand, within Psyr_1527 at 1718.375 kb on + strand, within Psyr_1527 at 1718.375 kb on + strand, within Psyr_1527 at 1718.375 kb on + strand, within Psyr_1527 at 1718.376 kb on - strand, within Psyr_1527 at 1718.376 kb on - strand, within Psyr_1527 at 1718.376 kb on - strand, within Psyr_1527 at 1718.376 kb on - strand, within Psyr_1527 at 1718.376 kb on - strand, within Psyr_1527 at 1718.376 kb on - strand, within Psyr_1527 at 1718.376 kb on - strand, within Psyr_1527 at 1718.376 kb on - strand, within Psyr_1527 at 1718.376 kb on - strand, within Psyr_1527 at 1718.425 kb on + strand, within Psyr_1527 at 1718.425 kb on + strand, within Psyr_1527 at 1718.425 kb on + strand, within Psyr_1527 at 1718.426 kb on - strand, within Psyr_1527 at 1718.426 kb on - strand, within Psyr_1527 at 1718.426 kb on - strand, within Psyr_1527 at 1718.459 kb on + strand, within Psyr_1527 at 1718.543 kb on - strand, within Psyr_1527 at 1718.560 kb on + strand, within Psyr_1527 at 1718.560 kb on + strand, within Psyr_1527 at 1718.560 kb on + strand, within Psyr_1527 at 1718.561 kb on - strand, within Psyr_1527 at 1718.561 kb on - strand, within Psyr_1527 at 1718.561 kb on - strand, within Psyr_1527 at 1718.561 kb on - strand, within Psyr_1527 at 1718.561 kb on - strand, within Psyr_1527 at 1718.561 kb on - strand, within Psyr_1527 at 1718.621 kb on + strand, within Psyr_1527 at 1718.646 kb on + strand, within Psyr_1527 at 1718.646 kb on + strand, within Psyr_1527 at 1718.646 kb on + strand, within Psyr_1527 at 1718.646 kb on + strand, within Psyr_1527 at 1718.647 kb on - strand, within Psyr_1527 at 1718.647 kb on - strand, within Psyr_1527 at 1718.647 kb on - strand, within Psyr_1527 at 1718.647 kb on - strand, within Psyr_1527 at 1718.647 kb on - strand, within Psyr_1527 at 1718.647 kb on - strand, within Psyr_1527 at 1718.647 kb on - strand, within Psyr_1527 at 1718.741 kb on - strand, within Psyr_1527 at 1718.818 kb on - strand, within Psyr_1527 at 1718.845 kb on + strand, within Psyr_1527 at 1718.868 kb on + strand, within Psyr_1527 at 1718.868 kb on + strand, within Psyr_1527 at 1718.868 kb on + strand, within Psyr_1527 at 1718.869 kb on - strand, within Psyr_1527 at 1718.869 kb on - strand, within Psyr_1527 at 1718.895 kb on - strand, within Psyr_1527 at 1718.900 kb on - strand, within Psyr_1527 at 1718.949 kb on + strand, within Psyr_1527 at 1718.949 kb on + strand, within Psyr_1527 at 1718.949 kb on + strand, within Psyr_1527 at 1718.950 kb on - strand, within Psyr_1527 at 1718.950 kb on - strand, within Psyr_1527 at 1718.950 kb on - strand, within Psyr_1527 at 1718.950 kb on - strand, within Psyr_1527 at 1718.950 kb on - strand, within Psyr_1527 at 1719.022 kb on + strand at 1719.022 kb on + strand at 1719.023 kb on - strand at 1719.023 kb on - strand at 1719.023 kb on - strand at 1719.026 kb on + strand at 1719.026 kb on + strand at 1719.026 kb on + strand at 1719.026 kb on + strand at 1719.026 kb on + strand at 1719.027 kb on - strand at 1719.027 kb on - strand at 1719.027 kb on - strand at 1719.027 kb on - strand at 1719.027 kb on - strand at 1719.027 kb on - strand at 1719.083 kb on + strand at 1719.083 kb on + strand at 1719.084 kb on - strand at 1719.084 kb on - strand at 1719.131 kb on + strand at 1719.207 kb on + strand, within Psyr_1528 at 1719.207 kb on + strand, within Psyr_1528 at 1719.207 kb on + strand, within Psyr_1528 at 1719.256 kb on + strand, within Psyr_1528 at 1719.256 kb on + strand, within Psyr_1528 at 1719.324 kb on + strand, within Psyr_1528 at 1719.521 kb on - strand at 1719.521 kb on - strand at 1719.521 kb on - strand at 1719.521 kb on - strand at 1719.521 kb on - strand at 1719.613 kb on + strand at 1719.613 kb on + strand at 1719.613 kb on + strand at 1719.613 kb on + strand at 1719.613 kb on + strand at 1719.613 kb on + strand at 1719.613 kb on + strand at 1719.613 kb on + strand at 1719.613 kb on + strand at 1719.613 kb on + strand at 1719.613 kb on + strand at 1719.613 kb on + strand at 1719.613 kb on + strand at 1719.613 kb on + strand at 1719.613 kb on + strand at 1719.613 kb on + strand at 1719.614 kb on - strand at 1719.614 kb on - strand at 1719.614 kb on - strand at 1719.614 kb on - strand at 1719.614 kb on - strand at 1719.614 kb on - strand at 1719.614 kb on - strand at 1719.619 kb on + strand at 1719.619 kb on + strand at 1719.619 kb on + strand at 1719.619 kb on + strand at 1719.619 kb on + strand at 1719.619 kb on + strand at 1719.619 kb on + strand at 1719.619 kb on + strand at 1719.619 kb on + strand at 1719.619 kb on + strand at 1719.619 kb on + strand at 1719.619 kb on + strand at 1719.619 kb on + strand at 1719.619 kb on + strand at 1719.619 kb on + strand at 1719.619 kb on + strand at 1719.620 kb on - strand at 1719.620 kb on - strand at 1719.620 kb on - strand at 1719.620 kb on - strand at 1719.620 kb on - strand at 1719.620 kb on - strand at 1719.620 kb on - strand at 1719.620 kb on - strand at 1719.620 kb on - strand at 1719.620 kb on - strand at 1719.620 kb on - strand at 1719.620 kb on - strand at 1719.620 kb on - strand at 1719.620 kb on - strand at 1719.620 kb on - strand at 1719.620 kb on - strand at 1719.620 kb on - strand at 1719.620 kb on - strand at 1719.678 kb on - strand, within Psyr_1529 at 1719.689 kb on - strand, within Psyr_1529 at 1719.689 kb on - strand, within Psyr_1529 at 1719.868 kb on - strand, within Psyr_1529 at 1719.931 kb on + strand, within Psyr_1529 at 1719.931 kb on + strand, within Psyr_1529 at 1719.931 kb on + strand, within Psyr_1529 at 1719.931 kb on + strand, within Psyr_1529 at 1719.931 kb on + strand, within Psyr_1529 at 1719.932 kb on - strand, within Psyr_1529 at 1719.932 kb on - strand, within Psyr_1529 at 1719.932 kb on - strand, within Psyr_1529 at 1719.932 kb on - strand, within Psyr_1529 at 1719.932 kb on - strand, within Psyr_1529 at 1719.932 kb on - strand, within Psyr_1529 at 1719.932 kb on - strand, within Psyr_1529 at 1719.932 kb on - strand, within Psyr_1529 at 1719.932 kb on - strand, within Psyr_1529 at 1719.932 kb on - strand, within Psyr_1529 at 1719.935 kb on + strand, within Psyr_1529 at 1719.935 kb on + strand, within Psyr_1529 at 1719.935 kb on + strand, within Psyr_1529 at 1719.936 kb on - strand, within Psyr_1529 at 1719.936 kb on - strand, within Psyr_1529 at 1719.936 kb on - strand, within Psyr_1529 at 1720.014 kb on + strand at 1720.022 kb on + strand at 1720.023 kb on - strand at 1720.023 kb on - strand at 1720.023 kb on - strand at 1720.024 kb on + strand at 1720.024 kb on + strand at 1720.024 kb on + strand at 1720.024 kb on + strand at 1720.024 kb on + strand at 1720.024 kb on + strand at 1720.024 kb on + strand at 1720.024 kb on + strand at 1720.024 kb on + strand at 1720.024 kb on + strand at 1720.025 kb on - strand at 1720.025 kb on - strand at 1720.025 kb on - strand at 1720.025 kb on - strand at 1720.025 kb on - strand at 1720.025 kb on - strand at 1720.025 kb on - strand at 1720.025 kb on - strand at 1720.025 kb on - strand at 1720.025 kb on - strand at 1720.025 kb on - strand at 1720.025 kb on - strand at 1720.025 kb on - strand at 1720.025 kb on - strand at 1720.025 kb on - strand at 1720.144 kb on + strand, within Psyr_1530 at 1720.145 kb on - strand, within Psyr_1530 at 1720.145 kb on - strand, within Psyr_1530 at 1720.173 kb on + strand, within Psyr_1530 at 1720.173 kb on + strand, within Psyr_1530 at 1720.173 kb on + strand, within Psyr_1530 at 1720.174 kb on - strand, within Psyr_1530 at 1720.241 kb on + strand, within Psyr_1530 at 1720.346 kb on + strand at 1720.360 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Rifampicin 0.1 mg/ml remove 1,718,268 - Psyr_1527 0.51 -1.0 1,718,280 + Psyr_1527 0.52 -0.2 1,718,280 + Psyr_1527 0.52 +1.0 1,718,281 - Psyr_1527 0.52 -0.0 1,718,372 + Psyr_1527 0.57 -0.3 1,718,372 + Psyr_1527 0.57 +1.9 1,718,372 + Psyr_1527 0.57 -0.2 1,718,373 - Psyr_1527 0.57 +0.1 1,718,373 - Psyr_1527 0.57 +0.1 1,718,373 - Psyr_1527 0.57 -1.9 1,718,373 - Psyr_1527 0.57 -0.5 1,718,373 - Psyr_1527 0.57 -0.3 1,718,373 - Psyr_1527 0.57 +0.2 1,718,373 - Psyr_1527 0.57 -0.0 1,718,373 - Psyr_1527 0.57 +0.7 1,718,373 - Psyr_1527 0.57 +0.1 1,718,375 + Psyr_1527 0.57 +0.8 1,718,375 + Psyr_1527 0.57 -1.5 1,718,375 + Psyr_1527 0.57 +0.4 1,718,375 + Psyr_1527 0.57 -1.1 1,718,375 + Psyr_1527 0.57 +0.4 1,718,375 + Psyr_1527 0.57 -1.6 1,718,375 + Psyr_1527 0.57 +0.6 1,718,375 + Psyr_1527 0.57 +3.9 1,718,376 - Psyr_1527 0.57 +0.7 1,718,376 - Psyr_1527 0.57 -0.1 1,718,376 - Psyr_1527 0.57 +0.7 1,718,376 - Psyr_1527 0.57 +0.3 1,718,376 - Psyr_1527 0.57 +0.3 1,718,376 - Psyr_1527 0.57 -0.6 1,718,376 - Psyr_1527 0.57 -0.6 1,718,376 - Psyr_1527 0.57 +0.0 1,718,376 - Psyr_1527 0.57 -0.2 1,718,425 + Psyr_1527 0.60 -1.2 1,718,425 + Psyr_1527 0.60 -0.2 1,718,425 + Psyr_1527 0.60 +0.4 1,718,426 - Psyr_1527 0.60 -1.1 1,718,426 - Psyr_1527 0.60 -0.4 1,718,426 - Psyr_1527 0.60 +0.4 1,718,459 + Psyr_1527 0.62 -1.8 1,718,543 - Psyr_1527 0.67 -0.2 1,718,560 + Psyr_1527 0.68 +2.1 1,718,560 + Psyr_1527 0.68 -0.9 1,718,560 + Psyr_1527 0.68 +0.9 1,718,561 - Psyr_1527 0.68 +0.2 1,718,561 - Psyr_1527 0.68 -0.0 1,718,561 - Psyr_1527 0.68 +0.7 1,718,561 - Psyr_1527 0.68 +0.2 1,718,561 - Psyr_1527 0.68 -0.0 1,718,561 - Psyr_1527 0.68 -0.8 1,718,621 + Psyr_1527 0.71 +0.7 1,718,646 + Psyr_1527 0.73 -1.4 1,718,646 + Psyr_1527 0.73 +0.4 1,718,646 + Psyr_1527 0.73 -0.7 1,718,646 + Psyr_1527 0.73 +1.0 1,718,647 - Psyr_1527 0.73 -0.7 1,718,647 - Psyr_1527 0.73 +0.0 1,718,647 - Psyr_1527 0.73 +0.8 1,718,647 - Psyr_1527 0.73 +0.4 1,718,647 - Psyr_1527 0.73 -0.2 1,718,647 - Psyr_1527 0.73 +0.6 1,718,647 - Psyr_1527 0.73 +0.8 1,718,741 - Psyr_1527 0.78 -0.4 1,718,818 - Psyr_1527 0.82 +1.5 1,718,845 + Psyr_1527 0.84 +1.1 1,718,868 + Psyr_1527 0.85 +0.6 1,718,868 + Psyr_1527 0.85 +0.1 1,718,868 + Psyr_1527 0.85 +0.7 1,718,869 - Psyr_1527 0.85 +0.3 1,718,869 - Psyr_1527 0.85 +0.7 1,718,895 - Psyr_1527 0.87 -0.3 1,718,900 - Psyr_1527 0.87 +0.8 1,718,949 + Psyr_1527 0.90 -1.2 1,718,949 + Psyr_1527 0.90 -0.9 1,718,949 + Psyr_1527 0.90 -1.3 1,718,950 - Psyr_1527 0.90 -0.9 1,718,950 - Psyr_1527 0.90 +0.9 1,718,950 - Psyr_1527 0.90 +0.3 1,718,950 - Psyr_1527 0.90 +0.5 1,718,950 - Psyr_1527 0.90 +0.3 1,719,022 + +1.3 1,719,022 + +0.4 1,719,023 - +0.0 1,719,023 - -0.6 1,719,023 - +1.2 1,719,026 + -0.3 1,719,026 + +0.1 1,719,026 + +1.4 1,719,026 + +0.5 1,719,026 + +0.7 1,719,027 - +0.3 1,719,027 - -0.3 1,719,027 - +1.2 1,719,027 - +0.3 1,719,027 - +1.4 1,719,027 - +0.5 1,719,083 + -0.3 1,719,083 + -0.9 1,719,084 - -0.5 1,719,084 - +0.5 1,719,131 + -0.6 1,719,207 + Psyr_1528 0.29 -0.4 1,719,207 + Psyr_1528 0.29 -0.7 1,719,207 + Psyr_1528 0.29 -1.6 1,719,256 + Psyr_1528 0.48 -1.9 1,719,256 + Psyr_1528 0.48 +0.7 1,719,324 + Psyr_1528 0.73 -1.3 1,719,521 - +0.9 1,719,521 - -0.2 1,719,521 - +0.4 1,719,521 - -0.0 1,719,521 - +2.0 1,719,613 + -0.4 1,719,613 + -0.7 1,719,613 + +0.2 1,719,613 + -0.4 1,719,613 + +1.2 1,719,613 + -2.0 1,719,613 + -1.5 1,719,613 + +0.4 1,719,613 + +0.6 1,719,613 + -0.6 1,719,613 + +1.9 1,719,613 + -2.3 1,719,613 + +0.7 1,719,613 + +0.1 1,719,613 + +1.1 1,719,613 + +0.1 1,719,614 - -1.1 1,719,614 - +0.8 1,719,614 - -0.6 1,719,614 - -0.2 1,719,614 - -0.5 1,719,614 - +1.4 1,719,614 - +0.2 1,719,619 + -0.3 1,719,619 + -2.5 1,719,619 + -1.5 1,719,619 + +1.8 1,719,619 + +0.3 1,719,619 + +0.0 1,719,619 + +0.2 1,719,619 + +1.2 1,719,619 + -0.6 1,719,619 + -0.6 1,719,619 + -0.9 1,719,619 + +0.3 1,719,619 + -0.7 1,719,619 + +0.5 1,719,619 + +0.4 1,719,619 + +0.2 1,719,620 - -0.0 1,719,620 - +0.5 1,719,620 - -0.1 1,719,620 - +0.2 1,719,620 - +0.0 1,719,620 - -0.2 1,719,620 - -0.4 1,719,620 - +0.2 1,719,620 - -1.2 1,719,620 - -0.0 1,719,620 - -0.3 1,719,620 - +0.7 1,719,620 - -0.1 1,719,620 - -0.1 1,719,620 - +2.5 1,719,620 - -1.4 1,719,620 - +1.3 1,719,620 - -0.7 1,719,678 - Psyr_1529 0.13 +0.1 1,719,689 - Psyr_1529 0.16 -1.0 1,719,689 - Psyr_1529 0.16 +0.0 1,719,868 - Psyr_1529 0.60 +1.1 1,719,931 + Psyr_1529 0.75 -0.6 1,719,931 + Psyr_1529 0.75 -2.1 1,719,931 + Psyr_1529 0.75 -0.8 1,719,931 + Psyr_1529 0.75 +0.7 1,719,931 + Psyr_1529 0.75 -1.8 1,719,932 - Psyr_1529 0.75 +1.6 1,719,932 - Psyr_1529 0.75 +0.4 1,719,932 - Psyr_1529 0.75 +1.0 1,719,932 - Psyr_1529 0.75 +1.5 1,719,932 - Psyr_1529 0.75 -0.0 1,719,932 - Psyr_1529 0.75 +0.2 1,719,932 - Psyr_1529 0.75 -0.2 1,719,932 - Psyr_1529 0.75 +0.7 1,719,932 - Psyr_1529 0.75 +0.2 1,719,932 - Psyr_1529 0.75 -0.6 1,719,935 + Psyr_1529 0.76 -1.1 1,719,935 + Psyr_1529 0.76 -0.7 1,719,935 + Psyr_1529 0.76 +0.8 1,719,936 - Psyr_1529 0.76 -0.3 1,719,936 - Psyr_1529 0.76 +1.4 1,719,936 - Psyr_1529 0.76 +0.4 1,720,014 + +1.1 1,720,022 + -0.2 1,720,023 - +1.3 1,720,023 - +2.7 1,720,023 - +0.2 1,720,024 + -1.3 1,720,024 + -0.2 1,720,024 + +1.7 1,720,024 + -0.4 1,720,024 + +0.4 1,720,024 + -0.5 1,720,024 + -1.6 1,720,024 + +0.2 1,720,024 + +1.0 1,720,024 + -0.3 1,720,025 - -1.3 1,720,025 - -0.3 1,720,025 - -2.8 1,720,025 - -0.2 1,720,025 - -2.2 1,720,025 - -0.2 1,720,025 - +1.7 1,720,025 - +0.5 1,720,025 - -0.1 1,720,025 - -0.0 1,720,025 - -0.5 1,720,025 - -1.8 1,720,025 - -0.5 1,720,025 - +0.1 1,720,025 - -0.0 1,720,144 + Psyr_1530 0.32 -0.6 1,720,145 - Psyr_1530 0.32 +0.4 1,720,145 - Psyr_1530 0.32 -0.9 1,720,173 + Psyr_1530 0.41 -0.3 1,720,173 + Psyr_1530 0.41 +0.5 1,720,173 + Psyr_1530 0.41 -2.2 1,720,174 - Psyr_1530 0.41 -0.6 1,720,241 + Psyr_1530 0.61 +1.1 1,720,346 + +0.4 1,720,360 + +0.4
Or see this region's nucleotide sequence