Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1503

Experiment: KB with Rifampicin 0.1 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Rifampicin 0.1 mg/ml
1,689,227	-		Psyr_1501	0.40	-0.2
1,689,266	-		Psyr_1501	0.45	+2.4
1,689,374	-		Psyr_1501	0.60	-1.5
1,689,374	-		Psyr_1501	0.60	-0.3
1,689,374	-		Psyr_1501	0.60	+0.8
1,689,374	-		Psyr_1501	0.60	+0.1
1,689,383	-		Psyr_1501	0.61	-0.7
1,689,383	-		Psyr_1501	0.61	-0.8
1,689,610	+				+0.5
1,689,610	+				-1.6
1,689,616	+				-1.0
1,689,616	+				-2.3
1,689,616	+				+0.4
1,689,616	+				-2.1
1,689,616	+				-1.4
1,689,617	-				+0.9
1,689,678	+				-1.2
1,689,678	+				+0.7
1,689,678	+				-0.9
1,689,678	+				+0.8
1,689,678	+				-0.2
1,689,678	+				+0.8
1,689,679	-				-1.1
1,689,679	-				+0.6
1,689,679	-				+0.1
1,689,679	-				+0.3
1,689,679	-				+0.4
1,689,679	-				+0.0
1,689,679	-				-0.4
1,689,679	-				-2.1
1,689,679	-				-0.6
1,689,761	+		Psyr_1502	0.20	-0.2
1,689,865	+		Psyr_1502	0.42	+1.2
1,689,865	+		Psyr_1502	0.42	+0.3
1,689,865	+		Psyr_1502	0.42	+0.2
1,689,866	-		Psyr_1502	0.42	+0.7
1,689,866	-		Psyr_1502	0.42	-0.9
1,689,866	-		Psyr_1502	0.42	-2.0
1,689,866	-		Psyr_1502	0.42	+0.7
1,689,866	-		Psyr_1502	0.42	-0.0
1,689,868	-		Psyr_1502	0.43	-0.4
1,689,915	-		Psyr_1502	0.53	+0.1
1,689,955	+		Psyr_1502	0.61	-1.1
1,689,969	-		Psyr_1502	0.64	-0.2
1,689,978	+		Psyr_1502	0.66	+0.3
1,689,979	-		Psyr_1502	0.66	+0.2
1,689,992	+		Psyr_1502	0.69	-0.2
1,689,992	+		Psyr_1502	0.69	-0.3
1,689,992	+		Psyr_1502	0.69	-0.7
1,689,993	-		Psyr_1502	0.69	+0.6
1,689,993	-		Psyr_1502	0.69	-1.5
1,689,993	-		Psyr_1502	0.69	-2.1
1,690,107	-				-1.2
1,690,121	+				-0.9
1,690,121	+				+0.1
1,690,121	+				+1.0
1,690,121	+				-0.3
1,690,121	+				+0.7
1,690,121	+				+0.7
1,690,121	+				-0.2
1,690,121	+				+0.3
1,690,121	+				-0.9
1,690,121	+				-0.7
1,690,122	-				-0.1
1,690,122	-				+0.6
1,690,122	-				-0.9
1,690,122	-				+0.1
1,690,122	-				-0.2
1,690,122	-				-0.7
1,690,122	-				+0.5
1,690,122	-				+0.4
1,690,122	-				+0.3
1,690,122	-				+2.3
1,690,122	-				-0.5
1,690,122	-				+0.2
1,690,125	+				+0.4
1,690,125	+				-0.7
1,690,125	+				+0.7
1,690,125	+				-0.7
1,690,126	-				-1.1
1,690,147	-				+0.6
1,690,147	-				+0.7
1,690,230	+				-0.7
1,690,230	+				+0.1
1,690,230	+				+1.2
1,690,230	+				+1.1
1,690,230	+				+0.8
1,690,231	-				-0.3
1,690,231	-				+1.1
1,690,231	-				-0.1
1,690,231	-				-0.5
1,690,231	-				-0.1
1,690,231	-				-0.7
1,690,231	-				+0.1
1,690,234	-				-0.2
1,690,304	-		Psyr_1503	0.12	+0.3
1,690,328	-		Psyr_1503	0.14	+1.0
1,690,347	+		Psyr_1503	0.16	-0.0
1,690,347	+		Psyr_1503	0.16	-1.0
1,690,347	+		Psyr_1503	0.16	-0.1
1,690,347	+		Psyr_1503	0.16	+0.7
1,690,348	-		Psyr_1503	0.16	+0.6
1,690,348	-		Psyr_1503	0.16	+0.8
1,690,393	+		Psyr_1503	0.19	+1.4
1,690,418	-		Psyr_1503	0.21	+0.2
1,690,475	-		Psyr_1503	0.26	+1.0
1,690,511	+		Psyr_1503	0.28	-0.9
1,690,554	+		Psyr_1503	0.32	-0.8
1,690,566	+		Psyr_1503	0.33	-0.2
1,690,566	+		Psyr_1503	0.33	+0.5
1,690,566	+		Psyr_1503	0.33	+1.7
1,690,567	-		Psyr_1503	0.33	-1.5
1,690,567	-		Psyr_1503	0.33	+0.0
1,690,567	-		Psyr_1503	0.33	+0.7
1,690,567	-		Psyr_1503	0.33	+2.0
1,690,567	-		Psyr_1503	0.33	+1.0
1,690,567	-		Psyr_1503	0.33	-2.8
1,690,712	+		Psyr_1503	0.44	-1.5
1,690,736	+		Psyr_1503	0.46	-1.3
1,690,737	-		Psyr_1503	0.46	+1.1
1,690,737	-		Psyr_1503	0.46	+0.3
1,690,843	-		Psyr_1503	0.54	+0.9
1,690,843	-		Psyr_1503	0.54	+0.0
1,690,911	+		Psyr_1503	0.59	+0.2
1,690,925	+		Psyr_1503	0.60	-1.0
1,690,925	+		Psyr_1503	0.60	+1.2
1,690,925	+		Psyr_1503	0.60	+0.1
1,691,025	-		Psyr_1503	0.68	-1.2
1,691,029	+		Psyr_1503	0.69	-0.0
1,691,029	+		Psyr_1503	0.69	+0.9
1,691,030	-		Psyr_1503	0.69	-1.7
1,691,030	-		Psyr_1503	0.69	+0.3
1,691,069	+		Psyr_1503	0.72	-0.9
1,691,069	+		Psyr_1503	0.72	+0.1
1,691,069	+		Psyr_1503	0.72	-0.9
1,691,069	+		Psyr_1503	0.72	+0.4
1,691,069	+				+0.7
1,691,069	+		Psyr_1503	0.72	-0.1
1,691,070	-		Psyr_1503	0.72	-0.4
1,691,111	+		Psyr_1503	0.75	+1.0
1,691,111	+		Psyr_1503	0.75	-0.7
1,691,111	+		Psyr_1503	0.75	+1.4
1,691,112	-		Psyr_1503	0.75	+2.1
1,691,132	+		Psyr_1503	0.77	+0.3
1,691,132	+		Psyr_1503	0.77	-1.0
1,691,132	+		Psyr_1503	0.77	-0.3
1,691,132	+		Psyr_1503	0.77	-0.2
1,691,132	+		Psyr_1503	0.77	+0.3
1,691,133	-		Psyr_1503	0.77	-0.2
1,691,133	-		Psyr_1503	0.77	+0.4
1,691,133	-		Psyr_1503	0.77	-1.3
1,691,133	-		Psyr_1503	0.77	-0.6
1,691,133	-		Psyr_1503	0.77	+0.2
1,691,153	+		Psyr_1503	0.78	+0.1
1,691,153	+		Psyr_1503	0.78	-0.3
1,691,255	-		Psyr_1503	0.86	+0.3
1,691,260	+		Psyr_1503	0.86	+0.3
1,691,276	+		Psyr_1503	0.88	+0.0
1,691,276	+		Psyr_1503	0.88	+0.0
1,691,276	+		Psyr_1503	0.88	+0.7
1,691,276	+		Psyr_1503	0.88	-0.6
1,691,276	+		Psyr_1503	0.88	-0.5
1,691,276	+		Psyr_1503	0.88	-0.6
1,691,276	+		Psyr_1503	0.88	-0.6
1,691,277	-		Psyr_1503	0.88	+1.3
1,691,277	-		Psyr_1503	0.88	-0.8
1,691,277	-		Psyr_1503	0.88	-0.3
1,691,289	-		Psyr_1503	0.89	+0.6
1,691,293	+		Psyr_1503	0.89	-0.2
1,691,294	-		Psyr_1503	0.89	-1.0
1,691,297	+		Psyr_1503	0.89	+0.4
1,691,297	+		Psyr_1503	0.89	+0.7
1,691,297	+		Psyr_1503	0.89	-1.9
1,691,297	+		Psyr_1503	0.89	+0.4
1,691,297	+		Psyr_1503	0.89	-1.6
1,691,297	+		Psyr_1503	0.89	-0.9
1,691,297	+		Psyr_1503	0.89	-0.7
1,691,298	-		Psyr_1503	0.89	+0.3
1,691,298	-		Psyr_1503	0.89	-0.5
1,691,298	-		Psyr_1503	0.89	-1.2
1,691,298	-		Psyr_1503	0.89	-0.3
1,691,298	-		Psyr_1503	0.89	+0.9
1,691,298	-		Psyr_1503	0.89	+0.7
1,691,298	-		Psyr_1503	0.89	+1.1
1,691,298	-		Psyr_1503	0.89	-0.2
1,691,298	-		Psyr_1503	0.89	+1.1
1,691,324	+				-1.4
1,691,325	-				-1.9
1,691,325	-				-0.1
1,691,325	-				+0.6
1,691,396	+				-1.4
1,691,408	+				-0.6
1,691,408	+				-0.2
1,691,408	+				-1.2
1,691,409	-				-0.4
1,691,409	-				-1.2
1,691,429	-				-0.1
1,691,429	-				+0.4
1,691,550	-		Psyr_1504	0.23	-1.1
1,691,565	-		Psyr_1504	0.27	-0.4
1,691,599	-		Psyr_1504	0.36	-0.7
1,691,601	+		Psyr_1504	0.36	+1.1
1,691,601	+		Psyr_1504	0.36	-0.5
1,691,601	+		Psyr_1504	0.36	+0.2
1,691,601	+		Psyr_1504	0.36	+0.7
1,691,601	+		Psyr_1504	0.36	-0.0
1,691,602	-		Psyr_1504	0.36	+0.5
1,691,602	-		Psyr_1504	0.36	-1.1
1,691,602	-		Psyr_1504	0.36	-0.0
1,691,701	+		Psyr_1504	0.61	+0.1
1,691,701	+		Psyr_1504	0.61	+0.1
1,691,701	+		Psyr_1504	0.61	-0.9
1,691,702	-		Psyr_1504	0.61	+1.0
1,691,717	+		Psyr_1504	0.65	-1.6
1,691,717	+		Psyr_1504	0.65	-0.6
1,691,717	+		Psyr_1504	0.65	-0.3
1,691,717	+		Psyr_1504	0.65	+1.0
1,691,717	+		Psyr_1504	0.65	-0.4
1,691,717	+		Psyr_1504	0.65	+1.0
1,691,717	+		Psyr_1504	0.65	-0.9
1,691,718	-		Psyr_1504	0.65	+0.0
1,691,718	-		Psyr_1504	0.65	+1.1
1,691,718	-		Psyr_1504	0.65	+0.5
1,691,718	-		Psyr_1504	0.65	-0.0
1,691,772	-		Psyr_1504	0.79	-0.3
1,691,831	-				+2.2
1,691,842	+				+0.7
1,691,850	+				-0.8
1,691,851	-				-0.7
1,691,851	-				-0.2
1,691,851	-				-0.8
1,691,884	+				+1.1
1,691,884	+				+0.3
1,691,884	+				+0.2
1,691,884	+				+0.3
1,691,884	+				+0.3
1,691,884	+				-1.0
1,691,885	-				-0.4
1,691,885	-				+0.5
1,691,885	-				-1.4
1,691,888	+				+0.1
1,691,888	+				-0.4
1,691,888	+				-0.7
1,691,888	+				+0.4
1,691,888	+				+0.9
1,691,889	-				+0.7
1,691,889	-				+0.7
1,691,889	-				-1.1
1,691,889	-				-0.5
1,691,889	-				+1.3
1,691,910	+				+0.2
1,691,910	+				-0.8
1,691,910	+				+1.0
1,691,911	-				+0.1
1,691,911	-				+0.2
1,691,911	-				-1.6
1,691,911	-				-2.3
1,691,936	+				-0.0
1,691,943	+				-0.2
1,691,943	+				-0.6
1,691,943	+				-0.5
1,691,985	-				-1.1
1,692,019	+				-0.3
1,692,019	+				+0.8
1,692,020	-				-1.0
1,692,020	-				-0.5
1,692,020	-				-1.0
1,692,020	-				-0.5
1,692,020	-				-1.8
1,692,020	-				-1.1
1,692,020	-				-1.2
1,692,020	-				-0.3
1,692,020	-				-1.9
1,692,020	-				-2.9
1,692,045	-		Psyr_1505	0.13	-2.1
1,692,052	+		Psyr_1505	0.16	-0.5
1,692,082	+		Psyr_1505	0.26	-1.3
1,692,083	-		Psyr_1505	0.27	+3.0
1,692,083	-		Psyr_1505	0.27	-2.5
1,692,152	+		Psyr_1505	0.52	-0.7
1,692,153	-		Psyr_1505	0.52	-0.7
1,692,273	+				+1.1
1,692,326	-				+0.3
1,692,326	-				-2.9
1,692,339	+				+1.4
1,692,339	+				-0.4
1,692,339	+				+0.2
1,692,339	+				+0.4
1,692,339	+				+1.0
1,692,339	+				-1.3
1,692,339	+				-0.8
1,692,339	+				+0.4
1,692,339	+				-1.0
1,692,339	+				+0.3
1,692,339	+				-0.3
1,692,339	+				-1.8
1,692,339	+				-1.9
1,692,339	+				+1.0
1,692,339	+				-0.7
1,692,339	+				+0.5
1,692,339	+				+0.0
1,692,339	+				+0.7
1,692,339	+				-1.5
1,692,339	+				+0.4
1,692,339	+				+0.7
1,692,339	+				-0.8
1,692,339	+				-0.1
1,692,339	+				-0.6
1,692,340	-				+0.5
1,692,340	-				-0.9
1,692,340	-				-0.1
1,692,340	-				+1.2
1,692,340	-				+0.3
1,692,340	-				-0.4
1,692,340	-				+0.7
1,692,340	-				-0.3
1,692,340	-				+0.6
1,692,340	-				+0.6
1,692,340	-				+2.7
1,692,340	-				+1.7
1,692,340	-				-0.8
1,692,340	-				+0.4
1,692,340	-				+1.7
1,692,340	-				+0.5
1,692,340	-				+0.4
1,692,340	-				-0.5
1,692,340	-				-2.1
1,692,341	+				+0.7
1,692,341	+				+0.5
1,692,341	+				+2.0
1,692,341	+				-1.6
1,692,342	-				+2.7
1,692,342	-				-0.7
1,692,393	+		Psyr_1506	0.11	+0.7
1,692,393	+		Psyr_1506	0.11	-2.4
1,692,393	+		Psyr_1506	0.11	-1.7
1,692,393	+		Psyr_1506	0.11	-1.2
1,692,393	+		Psyr_1506	0.11	+0.3
1,692,393	+		Psyr_1506	0.11	-1.2
1,692,393	+		Psyr_1506	0.11	-0.6
1,692,393	+		Psyr_1506	0.11	+0.3
1,692,393	+		Psyr_1506	0.11	+1.4
1,692,393	+		Psyr_1506	0.11	-0.0
1,692,393	+		Psyr_1506	0.11	+0.4
1,692,393	+		Psyr_1506	0.11	+0.1
1,692,393	+		Psyr_1506	0.11	-0.9
1,692,393	+		Psyr_1506	0.11	-0.6
1,692,393	+		Psyr_1506	0.11	+0.7
1,692,394	-		Psyr_1506	0.12	+0.0
1,692,394	-		Psyr_1506	0.12	-0.1
1,692,394	-		Psyr_1506	0.12	-0.7
1,692,394	-		Psyr_1506	0.12	+0.6
1,692,394	-		Psyr_1506	0.12	-1.3
1,692,394	-		Psyr_1506	0.12	+1.5
1,692,394	-		Psyr_1506	0.12	+3.7
1,692,394	-		Psyr_1506	0.12	-0.5
1,692,394	-		Psyr_1506	0.12	+0.9
1,692,394	-		Psyr_1506	0.12	+1.1
1,692,394	-		Psyr_1506	0.12	-1.0
1,692,394	-		Psyr_1506	0.12	+1.1
1,692,397	+		Psyr_1506	0.12	-1.0
1,692,398	-		Psyr_1506	0.12	+0.1
1,692,425	-		Psyr_1506	0.15	-1.1
1,692,434	+		Psyr_1506	0.16	-1.1