Experiment: KB with Rifampicin 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_1248 and Psyr_1249 are separated by 22 nucleotides Psyr_1249 and Psyr_1250 are separated by 39 nucleotides Psyr_1250 and Psyr_1251 are separated by 1 nucleotides
Psyr_1248: Psyr_1248 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, at 1,403,345 to 1,404,454
_1248
Psyr_1249: Psyr_1249 - histidyl-tRNA synthetase, at 1,404,477 to 1,405,766
_1249
Psyr_1250: Psyr_1250 - conserved hypothetical protein, at 1,405,806 to 1,406,447
_1250
Psyr_1251: Psyr_1251 - quinoprotein, at 1,406,449 to 1,407,594
_1251
Position (kb) 1404
1405
1406 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1404.483 kb on - strand at 1404.602 kb on + strand at 1404.678 kb on + strand, within Psyr_1249 at 1404.678 kb on + strand, within Psyr_1249 at 1404.678 kb on + strand, within Psyr_1249 at 1404.678 kb on + strand, within Psyr_1249 at 1404.678 kb on + strand, within Psyr_1249 at 1404.678 kb on + strand, within Psyr_1249 at 1404.678 kb on + strand, within Psyr_1249 at 1404.678 kb on + strand, within Psyr_1249 at 1404.798 kb on + strand, within Psyr_1249 at 1404.798 kb on + strand, within Psyr_1249 at 1404.798 kb on + strand, within Psyr_1249 at 1405.230 kb on + strand, within Psyr_1249 at 1405.230 kb on + strand, within Psyr_1249 at 1405.230 kb on + strand, within Psyr_1249 at 1405.230 kb on + strand, within Psyr_1249 at 1405.266 kb on + strand, within Psyr_1249 at 1405.269 kb on + strand, within Psyr_1249 at 1405.476 kb on + strand, within Psyr_1249 at 1405.712 kb on + strand at 1405.712 kb on + strand at 1405.775 kb on + strand at 1405.799 kb on + strand at 1405.932 kb on + strand, within Psyr_1250 at 1406.073 kb on + strand, within Psyr_1250 at 1406.073 kb on + strand, within Psyr_1250 at 1406.349 kb on + strand, within Psyr_1250 at 1406.349 kb on + strand, within Psyr_1250 at 1406.617 kb on + strand, within Psyr_1251 at 1406.656 kb on + strand, within Psyr_1251 at 1406.656 kb on + strand, within Psyr_1251 at 1406.656 kb on + strand, within Psyr_1251 at 1406.764 kb on + strand, within Psyr_1251
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Rifampicin 0.1 mg/ml remove 1,404,483 - +0.7 1,404,602 + -0.3 1,404,678 + Psyr_1249 0.16 -1.9 1,404,678 + Psyr_1249 0.16 -1.8 1,404,678 + Psyr_1249 0.16 +0.5 1,404,678 + Psyr_1249 0.16 -1.4 1,404,678 + Psyr_1249 0.16 -1.6 1,404,678 + Psyr_1249 0.16 -1.1 1,404,678 + Psyr_1249 0.16 +0.7 1,404,678 + Psyr_1249 0.16 -0.9 1,404,798 + Psyr_1249 0.25 -0.6 1,404,798 + Psyr_1249 0.25 +0.7 1,404,798 + Psyr_1249 0.25 -1.9 1,405,230 + Psyr_1249 0.58 +1.2 1,405,230 + Psyr_1249 0.58 -1.2 1,405,230 + Psyr_1249 0.58 +0.3 1,405,230 + Psyr_1249 0.58 -1.6 1,405,266 + Psyr_1249 0.61 -1.8 1,405,269 + Psyr_1249 0.61 -0.8 1,405,476 + Psyr_1249 0.77 -1.0 1,405,712 + +2.3 1,405,712 + -0.2 1,405,775 + -0.3 1,405,799 + -0.5 1,405,932 + Psyr_1250 0.20 -2.3 1,406,073 + Psyr_1250 0.42 -0.1 1,406,073 + Psyr_1250 0.42 +1.5 1,406,349 + Psyr_1250 0.85 -0.9 1,406,349 + Psyr_1250 0.85 +0.4 1,406,617 + Psyr_1251 0.15 +0.5 1,406,656 + Psyr_1251 0.18 -1.7 1,406,656 + Psyr_1251 0.18 -1.8 1,406,656 + Psyr_1251 0.18 +0.7 1,406,764 + Psyr_1251 0.27 -1.0
Or see this region's nucleotide sequence