Experiment: KB with Rifampicin 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_1234 and Psyr_1235 overlap by 1 nucleotides Psyr_1235 and Psyr_1236 are separated by 159 nucleotides Psyr_1236 and Psyr_1237 are separated by 44 nucleotides
Psyr_1234: Psyr_1234 - RNA methyltransferase TrmH, group 1, at 1,392,536 to 1,393,300
_1234
Psyr_1235: Psyr_1235 - serine O-acetyltransferase, at 1,393,300 to 1,394,076
_1235
Psyr_1236: Psyr_1236 - transcriptional regulator, BadM/Rrf2 family, at 1,394,236 to 1,394,727
_1236
Psyr_1237: Psyr_1237 - cysteine desulfurase IscS, at 1,394,772 to 1,395,986
_1237
Position (kb) 1394
1395 Strain fitness (log2 ratio) -2
-1
0
1 at 1393.280 kb on + strand at 1393.280 kb on + strand at 1393.281 kb on - strand at 1393.281 kb on - strand at 1393.281 kb on - strand at 1393.281 kb on - strand at 1393.694 kb on + strand, within Psyr_1235 at 1393.694 kb on + strand, within Psyr_1235 at 1393.694 kb on + strand, within Psyr_1235 at 1393.695 kb on - strand, within Psyr_1235 at 1393.695 kb on - strand, within Psyr_1235 at 1393.695 kb on - strand, within Psyr_1235 at 1393.887 kb on + strand, within Psyr_1235 at 1394.105 kb on + strand at 1394.105 kb on + strand at 1394.106 kb on - strand at 1394.121 kb on + strand at 1394.122 kb on - strand at 1394.200 kb on + strand at 1394.200 kb on + strand at 1394.200 kb on + strand at 1394.247 kb on + strand at 1394.247 kb on + strand at 1394.343 kb on + strand, within Psyr_1236 at 1394.343 kb on + strand, within Psyr_1236 at 1394.356 kb on + strand, within Psyr_1236 at 1394.639 kb on + strand, within Psyr_1236 at 1394.700 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Rifampicin 0.1 mg/ml remove 1,393,280 + +0.5 1,393,280 + -0.3 1,393,281 - -0.1 1,393,281 - -0.6 1,393,281 - -0.1 1,393,281 - -0.0 1,393,694 + Psyr_1235 0.51 -0.5 1,393,694 + Psyr_1235 0.51 -0.2 1,393,694 + Psyr_1235 0.51 +0.1 1,393,695 - Psyr_1235 0.51 -0.1 1,393,695 - Psyr_1235 0.51 -1.1 1,393,695 - Psyr_1235 0.51 +1.0 1,393,887 + Psyr_1235 0.76 -1.1 1,394,105 + +0.6 1,394,105 + -0.6 1,394,106 - -0.3 1,394,121 + -0.7 1,394,122 - -0.6 1,394,200 + +0.9 1,394,200 + +0.7 1,394,200 + +0.5 1,394,247 + +0.4 1,394,247 + +0.2 1,394,343 + Psyr_1236 0.22 -2.1 1,394,343 + Psyr_1236 0.22 -0.3 1,394,356 + Psyr_1236 0.24 -1.1 1,394,639 + Psyr_1236 0.82 +0.2 1,394,700 + -0.6
Or see this region's nucleotide sequence