Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1232

Experiment: KB with Rifampicin 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1231 and Psyr_1232 are separated by 108 nucleotidesPsyr_1232 and Psyr_1233 are separated by 66 nucleotides Psyr_1231: Psyr_1231 - protein translocase subunit secF, at 1,389,879 to 1,390,790 _1231 Psyr_1232: Psyr_1232 - conserved hypothetical protein, at 1,390,899 to 1,391,438 _1232 Psyr_1233: Psyr_1233 - Inositol monophosphatase, at 1,391,505 to 1,392,320 _1233 Position (kb) 1390 1391 1392Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1390.789 kb on - strandat 1390.803 kb on + strandat 1390.803 kb on + strandat 1390.803 kb on + strandat 1390.804 kb on - strandat 1390.804 kb on - strandat 1390.910 kb on + strandat 1390.910 kb on + strandat 1390.910 kb on + strandat 1390.910 kb on + strandat 1390.910 kb on + strandat 1390.910 kb on + strandat 1390.911 kb on - strandat 1390.911 kb on - strandat 1390.911 kb on - strandat 1390.911 kb on - strandat 1390.930 kb on + strandat 1390.930 kb on + strandat 1390.930 kb on + strandat 1390.931 kb on - strandat 1390.971 kb on + strand, within Psyr_1232at 1390.971 kb on + strand, within Psyr_1232at 1390.971 kb on + strand, within Psyr_1232at 1390.971 kb on + strand, within Psyr_1232at 1390.971 kb on + strand, within Psyr_1232at 1390.971 kb on + strand, within Psyr_1232at 1390.971 kb on + strand, within Psyr_1232at 1390.971 kb on + strand, within Psyr_1232at 1390.971 kb on + strand, within Psyr_1232at 1390.971 kb on + strand, within Psyr_1232at 1390.971 kb on + strand, within Psyr_1232at 1390.971 kb on + strand, within Psyr_1232at 1390.971 kb on + strand, within Psyr_1232at 1390.972 kb on - strand, within Psyr_1232at 1390.972 kb on - strand, within Psyr_1232at 1390.972 kb on - strand, within Psyr_1232at 1390.972 kb on - strand, within Psyr_1232at 1390.972 kb on - strand, within Psyr_1232at 1390.972 kb on - strand, within Psyr_1232at 1390.972 kb on - strand, within Psyr_1232at 1390.972 kb on - strand, within Psyr_1232at 1390.972 kb on - strand, within Psyr_1232at 1390.972 kb on - strand, within Psyr_1232at 1390.972 kb on - strand, within Psyr_1232at 1390.973 kb on + strand, within Psyr_1232at 1390.973 kb on + strand, within Psyr_1232at 1390.973 kb on + strand, within Psyr_1232at 1390.973 kb on + strand, within Psyr_1232at 1390.973 kb on + strand, within Psyr_1232at 1390.974 kb on - strand, within Psyr_1232at 1390.974 kb on - strand, within Psyr_1232at 1390.974 kb on - strand, within Psyr_1232at 1390.974 kb on - strand, within Psyr_1232at 1390.974 kb on - strand, within Psyr_1232at 1390.974 kb on - strand, within Psyr_1232at 1390.998 kb on + strand, within Psyr_1232at 1391.008 kb on + strand, within Psyr_1232at 1391.008 kb on + strand, within Psyr_1232at 1391.008 kb on + strand, within Psyr_1232at 1391.008 kb on + strand, within Psyr_1232at 1391.008 kb on + strand, within Psyr_1232at 1391.008 kb on + strand, within Psyr_1232at 1391.009 kb on - strand, within Psyr_1232at 1391.069 kb on - strand, within Psyr_1232at 1391.262 kb on + strand, within Psyr_1232at 1391.262 kb on + strand, within Psyr_1232at 1391.263 kb on - strand, within Psyr_1232at 1391.263 kb on - strand, within Psyr_1232at 1391.263 kb on - strand, within Psyr_1232at 1391.263 kb on - strand, within Psyr_1232at 1391.323 kb on - strand, within Psyr_1232at 1391.323 kb on - strand, within Psyr_1232at 1391.334 kb on + strand, within Psyr_1232at 1391.334 kb on + strand, within Psyr_1232at 1391.334 kb on + strand, within Psyr_1232at 1391.335 kb on - strand, within Psyr_1232at 1391.335 kb on - strand, within Psyr_1232at 1391.335 kb on - strand, within Psyr_1232at 1391.335 kb on - strand, within Psyr_1232at 1391.335 kb on - strand, within Psyr_1232at 1391.335 kb on - strand, within Psyr_1232at 1391.335 kb on - strand, within Psyr_1232at 1391.335 kb on - strand, within Psyr_1232at 1391.335 kb on - strand, within Psyr_1232at 1391.335 kb on - strand, within Psyr_1232at 1391.465 kb on + strandat 1391.466 kb on - strandat 1391.466 kb on - strandat 1391.494 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Rifampicin 0.1 mg/ml
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1,390,789 - -0.5
1,390,803 + +0.7
1,390,803 + +4.0
1,390,803 + +3.3
1,390,804 - -0.6
1,390,804 - -0.5
1,390,910 + +1.4
1,390,910 + -0.6
1,390,910 + -1.3
1,390,910 + +1.0
1,390,910 + +1.0
1,390,910 + -0.9
1,390,911 - +0.6
1,390,911 - -0.0
1,390,911 - -0.3
1,390,911 - -0.1
1,390,930 + +0.0
1,390,930 + +0.5
1,390,930 + +0.0
1,390,931 - +0.7
1,390,971 + Psyr_1232 0.13 +0.5
1,390,971 + Psyr_1232 0.13 +1.3
1,390,971 + Psyr_1232 0.13 +1.6
1,390,971 + Psyr_1232 0.13 +0.7
1,390,971 + Psyr_1232 0.13 +0.1
1,390,971 + Psyr_1232 0.13 +0.3
1,390,971 + Psyr_1232 0.13 -0.2
1,390,971 + Psyr_1232 0.13 +0.6
1,390,971 + Psyr_1232 0.13 -0.1
1,390,971 + Psyr_1232 0.13 -0.7
1,390,971 + Psyr_1232 0.13 +0.2
1,390,971 + Psyr_1232 0.13 -0.4
1,390,971 + Psyr_1232 0.13 -0.0
1,390,972 - Psyr_1232 0.14 -0.9
1,390,972 - Psyr_1232 0.14 +0.1
1,390,972 - Psyr_1232 0.14 +1.4
1,390,972 - Psyr_1232 0.14 +0.4
1,390,972 - Psyr_1232 0.14 -0.1
1,390,972 - Psyr_1232 0.14 +0.3
1,390,972 - Psyr_1232 0.14 -0.4
1,390,972 - Psyr_1232 0.14 +0.1
1,390,972 - Psyr_1232 0.14 +0.1
1,390,972 - Psyr_1232 0.14 -0.9
1,390,972 - Psyr_1232 0.14 -1.9
1,390,973 + Psyr_1232 0.14 +0.7
1,390,973 + Psyr_1232 0.14 +1.7
1,390,973 + Psyr_1232 0.14 +1.2
1,390,973 + Psyr_1232 0.14 +0.1
1,390,973 + Psyr_1232 0.14 +0.2
1,390,974 - Psyr_1232 0.14 +1.1
1,390,974 - Psyr_1232 0.14 -0.6
1,390,974 - Psyr_1232 0.14 +0.4
1,390,974 - Psyr_1232 0.14 +1.1
1,390,974 - Psyr_1232 0.14 +0.1
1,390,974 - Psyr_1232 0.14 +0.5
1,390,998 + Psyr_1232 0.18 +2.3
1,391,008 + Psyr_1232 0.20 +0.4
1,391,008 + Psyr_1232 0.20 +0.2
1,391,008 + Psyr_1232 0.20 +0.8
1,391,008 + Psyr_1232 0.20 -1.3
1,391,008 + Psyr_1232 0.20 +0.6
1,391,008 + Psyr_1232 0.20 -0.6
1,391,009 - Psyr_1232 0.20 +0.5
1,391,069 - Psyr_1232 0.31 +0.4
1,391,262 + Psyr_1232 0.67 +1.5
1,391,262 + Psyr_1232 0.67 -0.8
1,391,263 - Psyr_1232 0.67 -0.6
1,391,263 - Psyr_1232 0.67 -0.6
1,391,263 - Psyr_1232 0.67 -0.7
1,391,263 - Psyr_1232 0.67 +0.4
1,391,323 - Psyr_1232 0.79 +0.2
1,391,323 - Psyr_1232 0.79 -0.6
1,391,334 + Psyr_1232 0.81 +0.2
1,391,334 + Psyr_1232 0.81 +2.7
1,391,334 + Psyr_1232 0.81 -0.5
1,391,335 - Psyr_1232 0.81 -1.3
1,391,335 - Psyr_1232 0.81 +0.2
1,391,335 - Psyr_1232 0.81 -0.0
1,391,335 - Psyr_1232 0.81 -0.8
1,391,335 - Psyr_1232 0.81 -0.5
1,391,335 - Psyr_1232 0.81 -0.1
1,391,335 - Psyr_1232 0.81 +2.1
1,391,335 - Psyr_1232 0.81 +1.6
1,391,335 - Psyr_1232 0.81 +0.7
1,391,335 - Psyr_1232 0.81 -0.0
1,391,465 + -0.5
1,391,466 - +1.4
1,391,466 - -0.3
1,391,494 - +0.5

Or see this region's nucleotide sequence