Experiment: KB with Rifampicin 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_1158 and Psyr_1159 are separated by 51 nucleotides Psyr_1159 and Psyr_1160 are separated by 824 nucleotides
Psyr_1158: Psyr_1158 - Gluconate transporter, at 1,310,315 to 1,311,685
_1158
Psyr_1159: Psyr_1159 - PAS:GGDEF, at 1,311,737 to 1,313,983
_1159
Psyr_1160: Psyr_1160 - Uncharacterized protein conserved in bacteria-like protein, at 1,314,808 to 1,315,554
_1160
Position (kb) 1311
1312
1313
1314 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1310.930 kb on + strand, within Psyr_1158 at 1311.093 kb on + strand, within Psyr_1158 at 1311.094 kb on - strand, within Psyr_1158 at 1311.094 kb on - strand, within Psyr_1158 at 1311.368 kb on + strand, within Psyr_1158 at 1311.369 kb on - strand, within Psyr_1158 at 1311.451 kb on + strand, within Psyr_1158 at 1311.575 kb on + strand at 1311.696 kb on - strand at 1311.769 kb on + strand at 1311.769 kb on + strand at 1311.769 kb on + strand at 1311.810 kb on + strand at 1311.810 kb on + strand at 1311.852 kb on + strand at 1311.852 kb on + strand at 1311.852 kb on + strand at 1311.852 kb on + strand at 1311.852 kb on + strand at 1311.852 kb on + strand at 1311.852 kb on + strand at 1311.852 kb on + strand at 1311.852 kb on + strand at 1311.852 kb on + strand at 1311.852 kb on + strand at 1311.852 kb on + strand at 1311.853 kb on - strand at 1311.853 kb on - strand at 1311.853 kb on - strand at 1311.853 kb on - strand at 1311.853 kb on - strand at 1311.853 kb on - strand at 1311.853 kb on - strand at 1311.853 kb on - strand at 1311.853 kb on - strand at 1311.948 kb on + strand at 1311.948 kb on + strand at 1311.948 kb on + strand at 1311.948 kb on + strand at 1311.948 kb on + strand at 1311.948 kb on + strand at 1311.948 kb on + strand at 1311.949 kb on - strand at 1311.949 kb on - strand at 1311.949 kb on - strand at 1311.949 kb on - strand at 1311.949 kb on - strand at 1311.949 kb on - strand at 1311.949 kb on - strand at 1312.014 kb on + strand, within Psyr_1159 at 1312.014 kb on + strand, within Psyr_1159 at 1312.015 kb on - strand, within Psyr_1159 at 1312.153 kb on + strand, within Psyr_1159 at 1312.153 kb on + strand, within Psyr_1159 at 1312.331 kb on - strand, within Psyr_1159 at 1312.446 kb on + strand, within Psyr_1159 at 1312.446 kb on + strand, within Psyr_1159 at 1312.446 kb on + strand, within Psyr_1159 at 1312.446 kb on + strand, within Psyr_1159 at 1312.447 kb on - strand, within Psyr_1159 at 1312.458 kb on + strand, within Psyr_1159 at 1312.458 kb on + strand, within Psyr_1159 at 1312.458 kb on + strand, within Psyr_1159 at 1312.458 kb on + strand, within Psyr_1159 at 1312.459 kb on - strand, within Psyr_1159 at 1312.459 kb on - strand, within Psyr_1159 at 1312.590 kb on + strand, within Psyr_1159 at 1312.590 kb on + strand, within Psyr_1159 at 1312.590 kb on + strand, within Psyr_1159 at 1312.590 kb on + strand, within Psyr_1159 at 1312.590 kb on + strand, within Psyr_1159 at 1312.590 kb on + strand, within Psyr_1159 at 1312.591 kb on - strand, within Psyr_1159 at 1312.591 kb on - strand, within Psyr_1159 at 1312.591 kb on - strand, within Psyr_1159 at 1312.633 kb on + strand, within Psyr_1159 at 1312.634 kb on - strand, within Psyr_1159 at 1312.932 kb on - strand, within Psyr_1159 at 1312.958 kb on - strand, within Psyr_1159 at 1312.995 kb on + strand, within Psyr_1159 at 1312.995 kb on + strand, within Psyr_1159 at 1312.996 kb on - strand, within Psyr_1159 at 1313.040 kb on + strand, within Psyr_1159 at 1313.040 kb on + strand, within Psyr_1159 at 1313.040 kb on + strand, within Psyr_1159 at 1313.040 kb on + strand, within Psyr_1159 at 1313.040 kb on + strand, within Psyr_1159 at 1313.040 kb on + strand, within Psyr_1159 at 1313.040 kb on + strand, within Psyr_1159 at 1313.040 kb on + strand, within Psyr_1159 at 1313.041 kb on - strand, within Psyr_1159 at 1313.041 kb on - strand, within Psyr_1159 at 1313.041 kb on - strand, within Psyr_1159 at 1313.041 kb on - strand, within Psyr_1159 at 1313.041 kb on - strand, within Psyr_1159 at 1313.041 kb on - strand, within Psyr_1159 at 1313.041 kb on - strand, within Psyr_1159 at 1313.041 kb on - strand, within Psyr_1159 at 1313.041 kb on - strand, within Psyr_1159 at 1313.041 kb on - strand, within Psyr_1159 at 1313.041 kb on - strand, within Psyr_1159 at 1313.041 kb on - strand, within Psyr_1159 at 1313.041 kb on - strand, within Psyr_1159 at 1313.041 kb on - strand, within Psyr_1159 at 1313.309 kb on - strand, within Psyr_1159 at 1313.367 kb on - strand, within Psyr_1159 at 1313.367 kb on - strand, within Psyr_1159 at 1313.418 kb on + strand, within Psyr_1159 at 1313.425 kb on + strand, within Psyr_1159 at 1313.464 kb on + strand, within Psyr_1159 at 1313.571 kb on + strand, within Psyr_1159 at 1313.571 kb on + strand, within Psyr_1159 at 1313.572 kb on - strand, within Psyr_1159 at 1313.572 kb on - strand, within Psyr_1159 at 1313.575 kb on + strand, within Psyr_1159 at 1313.576 kb on - strand, within Psyr_1159 at 1313.576 kb on - strand, within Psyr_1159 at 1313.581 kb on + strand, within Psyr_1159 at 1313.581 kb on + strand, within Psyr_1159 at 1313.582 kb on - strand, within Psyr_1159 at 1313.582 kb on - strand, within Psyr_1159 at 1313.700 kb on + strand, within Psyr_1159 at 1313.700 kb on + strand, within Psyr_1159 at 1313.700 kb on + strand, within Psyr_1159 at 1313.700 kb on + strand, within Psyr_1159 at 1313.700 kb on + strand, within Psyr_1159 at 1313.700 kb on + strand, within Psyr_1159 at 1313.700 kb on + strand, within Psyr_1159 at 1313.701 kb on - strand, within Psyr_1159 at 1313.701 kb on - strand, within Psyr_1159 at 1313.701 kb on - strand, within Psyr_1159 at 1313.778 kb on + strand at 1313.967 kb on + strand at 1313.968 kb on - strand at 1314.041 kb on - strand at 1314.127 kb on + strand at 1314.127 kb on + strand at 1314.127 kb on + strand at 1314.127 kb on + strand at 1314.128 kb on - strand at 1314.128 kb on - strand at 1314.128 kb on - strand at 1314.128 kb on - strand at 1314.145 kb on - strand at 1314.233 kb on + strand at 1314.233 kb on + strand at 1314.233 kb on + strand at 1314.233 kb on + strand at 1314.233 kb on + strand at 1314.234 kb on - strand at 1314.234 kb on - strand at 1314.234 kb on - strand at 1314.234 kb on - strand at 1314.234 kb on - strand at 1314.234 kb on - strand at 1314.234 kb on - strand at 1314.234 kb on - strand at 1314.234 kb on - strand at 1314.234 kb on - strand at 1314.234 kb on - strand at 1314.234 kb on - strand at 1314.234 kb on - strand at 1314.234 kb on - strand at 1314.236 kb on + strand at 1314.236 kb on + strand at 1314.237 kb on - strand at 1314.237 kb on - strand at 1314.237 kb on - strand at 1314.237 kb on - strand at 1314.239 kb on + strand at 1314.239 kb on + strand at 1314.239 kb on + strand at 1314.239 kb on + strand at 1314.240 kb on - strand at 1314.240 kb on - strand at 1314.240 kb on - strand at 1314.240 kb on - strand at 1314.240 kb on - strand at 1314.287 kb on - strand at 1314.402 kb on + strand at 1314.402 kb on + strand at 1314.402 kb on + strand at 1314.402 kb on + strand at 1314.402 kb on + strand at 1314.403 kb on - strand at 1314.406 kb on + strand at 1314.406 kb on + strand at 1314.407 kb on - strand at 1314.457 kb on + strand at 1314.503 kb on + strand at 1314.503 kb on + strand at 1314.503 kb on + strand at 1314.503 kb on + strand at 1314.504 kb on - strand at 1314.504 kb on - strand at 1314.551 kb on - strand at 1314.575 kb on - strand at 1314.591 kb on - strand at 1314.815 kb on + strand at 1314.819 kb on + strand at 1314.820 kb on - strand at 1314.820 kb on - strand at 1314.830 kb on + strand at 1314.831 kb on - strand at 1314.831 kb on - strand at 1314.831 kb on - strand at 1314.875 kb on + strand at 1314.875 kb on + strand at 1314.876 kb on - strand at 1314.876 kb on - strand at 1314.876 kb on - strand at 1314.876 kb on - strand at 1314.876 kb on - strand at 1314.876 kb on - strand at 1314.876 kb on - strand at 1314.876 kb on - strand at 1314.896 kb on - strand, within Psyr_1160 at 1314.896 kb on - strand, within Psyr_1160 at 1314.901 kb on + strand, within Psyr_1160 at 1314.901 kb on + strand, within Psyr_1160 at 1314.902 kb on - strand, within Psyr_1160 at 1314.902 kb on - strand, within Psyr_1160 at 1314.948 kb on + strand, within Psyr_1160 at 1314.948 kb on + strand, within Psyr_1160 at 1314.948 kb on + strand, within Psyr_1160 at 1314.949 kb on - strand, within Psyr_1160 at 1314.950 kb on + strand, within Psyr_1160 at 1314.950 kb on + strand, within Psyr_1160 at 1314.950 kb on + strand, within Psyr_1160 at 1314.950 kb on + strand, within Psyr_1160 at 1314.950 kb on + strand, within Psyr_1160 at 1314.951 kb on - strand, within Psyr_1160 at 1314.951 kb on - strand, within Psyr_1160 at 1314.951 kb on - strand, within Psyr_1160 at 1314.951 kb on - strand, within Psyr_1160 at 1314.951 kb on - strand, within Psyr_1160 at 1314.951 kb on - strand, within Psyr_1160 at 1314.951 kb on - strand, within Psyr_1160 at 1314.951 kb on - strand, within Psyr_1160 at 1314.951 kb on - strand, within Psyr_1160
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Rifampicin 0.1 mg/ml remove 1,310,930 + Psyr_1158 0.45 -2.6 1,311,093 + Psyr_1158 0.57 +0.9 1,311,094 - Psyr_1158 0.57 +0.5 1,311,094 - Psyr_1158 0.57 +1.4 1,311,368 + Psyr_1158 0.77 -0.9 1,311,369 - Psyr_1158 0.77 +1.2 1,311,451 + Psyr_1158 0.83 +0.6 1,311,575 + -0.0 1,311,696 - -1.0 1,311,769 + -0.6 1,311,769 + +0.2 1,311,769 + -0.4 1,311,810 + +0.1 1,311,810 + -0.9 1,311,852 + +0.9 1,311,852 + -0.3 1,311,852 + -1.7 1,311,852 + -0.4 1,311,852 + +0.3 1,311,852 + +0.7 1,311,852 + +1.0 1,311,852 + -0.9 1,311,852 + -0.9 1,311,852 + +3.2 1,311,852 + -0.6 1,311,852 + +1.3 1,311,853 - +0.5 1,311,853 - +0.2 1,311,853 - +0.4 1,311,853 - -1.6 1,311,853 - +3.0 1,311,853 - -0.3 1,311,853 - +1.9 1,311,853 - -0.2 1,311,853 - -0.3 1,311,948 + -0.1 1,311,948 + -0.3 1,311,948 + -0.3 1,311,948 + -0.1 1,311,948 + +1.3 1,311,948 + -0.7 1,311,948 + +1.0 1,311,949 - -0.2 1,311,949 - -1.3 1,311,949 - +0.3 1,311,949 - -0.3 1,311,949 - -0.3 1,311,949 - +0.9 1,311,949 - +0.7 1,312,014 + Psyr_1159 0.12 -0.5 1,312,014 + Psyr_1159 0.12 +0.5 1,312,015 - Psyr_1159 0.12 +0.5 1,312,153 + Psyr_1159 0.19 -0.3 1,312,153 + Psyr_1159 0.19 +0.6 1,312,331 - Psyr_1159 0.26 -0.5 1,312,446 + Psyr_1159 0.32 -0.1 1,312,446 + Psyr_1159 0.32 +0.5 1,312,446 + Psyr_1159 0.32 -0.3 1,312,446 + Psyr_1159 0.32 -0.2 1,312,447 - Psyr_1159 0.32 +0.5 1,312,458 + Psyr_1159 0.32 +1.7 1,312,458 + Psyr_1159 0.32 +2.7 1,312,458 + Psyr_1159 0.32 -1.7 1,312,458 + Psyr_1159 0.32 -0.2 1,312,459 - Psyr_1159 0.32 -0.3 1,312,459 - Psyr_1159 0.32 +0.1 1,312,590 + Psyr_1159 0.38 -1.1 1,312,590 + Psyr_1159 0.38 +0.3 1,312,590 + Psyr_1159 0.38 +1.7 1,312,590 + Psyr_1159 0.38 +1.0 1,312,590 + Psyr_1159 0.38 -0.1 1,312,590 + Psyr_1159 0.38 +0.5 1,312,591 - Psyr_1159 0.38 -0.3 1,312,591 - Psyr_1159 0.38 -0.7 1,312,591 - Psyr_1159 0.38 +1.7 1,312,633 + Psyr_1159 0.40 -0.5 1,312,634 - Psyr_1159 0.40 -0.2 1,312,932 - Psyr_1159 0.53 -0.7 1,312,958 - Psyr_1159 0.54 +1.4 1,312,995 + Psyr_1159 0.56 -0.6 1,312,995 + Psyr_1159 0.56 +0.8 1,312,996 - Psyr_1159 0.56 -1.3 1,313,040 + Psyr_1159 0.58 -0.4 1,313,040 + Psyr_1159 0.58 -1.4 1,313,040 + Psyr_1159 0.58 -1.5 1,313,040 + Psyr_1159 0.58 -1.2 1,313,040 + Psyr_1159 0.58 -1.0 1,313,040 + Psyr_1159 0.58 -0.0 1,313,040 + Psyr_1159 0.58 -0.6 1,313,040 + Psyr_1159 0.58 -0.7 1,313,041 - Psyr_1159 0.58 +0.7 1,313,041 - Psyr_1159 0.58 +0.2 1,313,041 - Psyr_1159 0.58 -0.5 1,313,041 - Psyr_1159 0.58 -1.4 1,313,041 - Psyr_1159 0.58 -0.9 1,313,041 - Psyr_1159 0.58 -0.6 1,313,041 - Psyr_1159 0.58 -0.6 1,313,041 - Psyr_1159 0.58 -0.1 1,313,041 - Psyr_1159 0.58 +0.9 1,313,041 - Psyr_1159 0.58 -1.1 1,313,041 - Psyr_1159 0.58 -0.2 1,313,041 - Psyr_1159 0.58 -0.3 1,313,041 - Psyr_1159 0.58 +0.2 1,313,041 - Psyr_1159 0.58 +0.5 1,313,309 - Psyr_1159 0.70 -0.2 1,313,367 - Psyr_1159 0.73 -1.5 1,313,367 - Psyr_1159 0.73 -0.3 1,313,418 + Psyr_1159 0.75 -0.4 1,313,425 + Psyr_1159 0.75 +0.7 1,313,464 + Psyr_1159 0.77 -0.1 1,313,571 + Psyr_1159 0.82 -0.6 1,313,571 + Psyr_1159 0.82 -1.0 1,313,572 - Psyr_1159 0.82 +0.6 1,313,572 - Psyr_1159 0.82 +0.6 1,313,575 + Psyr_1159 0.82 +2.0 1,313,576 - Psyr_1159 0.82 -0.9 1,313,576 - Psyr_1159 0.82 -1.7 1,313,581 + Psyr_1159 0.82 +0.6 1,313,581 + Psyr_1159 0.82 -2.3 1,313,582 - Psyr_1159 0.82 +0.6 1,313,582 - Psyr_1159 0.82 -0.8 1,313,700 + Psyr_1159 0.87 +0.4 1,313,700 + Psyr_1159 0.87 -0.8 1,313,700 + Psyr_1159 0.87 +0.4 1,313,700 + Psyr_1159 0.87 -0.6 1,313,700 + Psyr_1159 0.87 +0.4 1,313,700 + Psyr_1159 0.87 +0.5 1,313,700 + Psyr_1159 0.87 +0.0 1,313,701 - Psyr_1159 0.87 +0.1 1,313,701 - Psyr_1159 0.87 -1.0 1,313,701 - Psyr_1159 0.87 -0.5 1,313,778 + -0.3 1,313,967 + +1.0 1,313,968 - +0.7 1,314,041 - +1.0 1,314,127 + +0.7 1,314,127 + -1.3 1,314,127 + -0.6 1,314,127 + +0.4 1,314,128 - -1.1 1,314,128 - +0.8 1,314,128 - +1.4 1,314,128 - +0.1 1,314,145 - -0.2 1,314,233 + +0.7 1,314,233 + +1.0 1,314,233 + +0.8 1,314,233 + +0.7 1,314,233 + -0.0 1,314,234 - +1.0 1,314,234 - +0.9 1,314,234 - -1.2 1,314,234 - +0.7 1,314,234 - +0.7 1,314,234 - -0.4 1,314,234 - +0.0 1,314,234 - -0.2 1,314,234 - -0.3 1,314,234 - -2.1 1,314,234 - +0.7 1,314,234 - +0.7 1,314,234 - +1.0 1,314,234 - -0.8 1,314,236 + +0.3 1,314,236 + -0.3 1,314,237 - +0.3 1,314,237 - +0.3 1,314,237 - -0.7 1,314,237 - +0.9 1,314,239 + +0.5 1,314,239 + -0.4 1,314,239 + -0.3 1,314,239 + +1.9 1,314,240 - +0.1 1,314,240 - -0.8 1,314,240 - +0.4 1,314,240 - -0.4 1,314,240 - +0.9 1,314,287 - -0.8 1,314,402 + -0.9 1,314,402 + +0.3 1,314,402 + -0.9 1,314,402 + +0.3 1,314,402 + -0.6 1,314,403 - -0.9 1,314,406 + +0.6 1,314,406 + -0.1 1,314,407 - -2.7 1,314,457 + -0.1 1,314,503 + +0.4 1,314,503 + +1.0 1,314,503 + -0.9 1,314,503 + +0.3 1,314,504 - +0.7 1,314,504 - -0.9 1,314,551 - +2.2 1,314,575 - -2.3 1,314,591 - -0.1 1,314,815 + +0.3 1,314,819 + -1.4 1,314,820 - +1.2 1,314,820 - -1.3 1,314,830 + +0.3 1,314,831 - +0.5 1,314,831 - -0.3 1,314,831 - -0.3 1,314,875 + -1.6 1,314,875 + -0.9 1,314,876 - -0.8 1,314,876 - -0.2 1,314,876 - +0.6 1,314,876 - +1.3 1,314,876 - -0.1 1,314,876 - -1.2 1,314,876 - -0.1 1,314,876 - -0.5 1,314,896 - Psyr_1160 0.12 +0.8 1,314,896 - Psyr_1160 0.12 +0.7 1,314,901 + Psyr_1160 0.12 -0.4 1,314,901 + Psyr_1160 0.12 -0.9 1,314,902 - Psyr_1160 0.13 -1.1 1,314,902 - Psyr_1160 0.13 +1.0 1,314,948 + Psyr_1160 0.19 -1.3 1,314,948 + Psyr_1160 0.19 -0.3 1,314,948 + Psyr_1160 0.19 -0.8 1,314,949 - Psyr_1160 0.19 +0.7 1,314,950 + Psyr_1160 0.19 +2.3 1,314,950 + Psyr_1160 0.19 +1.7 1,314,950 + Psyr_1160 0.19 -0.0 1,314,950 + Psyr_1160 0.19 -0.4 1,314,950 + Psyr_1160 0.19 +0.3 1,314,951 - Psyr_1160 0.19 -0.3 1,314,951 - Psyr_1160 0.19 -2.6 1,314,951 - Psyr_1160 0.19 -0.5 1,314,951 - Psyr_1160 0.19 -1.6 1,314,951 - Psyr_1160 0.19 -0.1 1,314,951 - Psyr_1160 0.19 -0.9 1,314,951 - Psyr_1160 0.19 -1.6 1,314,951 - Psyr_1160 0.19 +1.1 1,314,951 - Psyr_1160 0.19 +0.8
Or see this region's nucleotide sequence