Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0745

Experiment: KB with Rifampicin 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0743 and Psyr_0744 are separated by 75 nucleotidesPsyr_0744 and Psyr_0745 overlap by 124 nucleotidesPsyr_0745 and Psyr_0746 are separated by 61 nucleotidesPsyr_0746 and Psyr_0747 are separated by 25 nucleotidesPsyr_0747 and Psyr_0748 are separated by 209 nucleotides Psyr_0743: Psyr_0743 - CDS, at 846,969 to 847,376 _0743 Psyr_0744: Psyr_0744 - CDS, at 847,452 to 848,153 _0744 Psyr_0745: Psyr_0745 - CDS, at 848,030 to 848,569 _0745 Psyr_0746: Psyr_0746 - IS66 Orf2 like protein, at 848,631 to 848,996 _0746 Psyr_0747: Psyr_0747 - CDS, at 849,022 to 849,339 _0747 Psyr_0748: Psyr_0748 - Major facilitator superfamily, at 849,549 to 850,991 _0748 Position (kb) 848 849Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 847.232 kb on + strand, within Psyr_0743at 847.232 kb on + strand, within Psyr_0743at 847.232 kb on + strand, within Psyr_0743at 847.232 kb on + strand, within Psyr_0743at 847.233 kb on - strand, within Psyr_0743at 847.233 kb on - strand, within Psyr_0743at 847.233 kb on - strand, within Psyr_0743at 847.233 kb on - strand, within Psyr_0743at 847.233 kb on - strand, within Psyr_0743at 847.233 kb on - strand, within Psyr_0743at 847.235 kb on + strand, within Psyr_0743at 847.236 kb on - strand, within Psyr_0743at 847.236 kb on - strand, within Psyr_0743at 847.236 kb on - strand, within Psyr_0743at 847.370 kb on + strandat 847.371 kb on - strandat 847.454 kb on - strandat 847.468 kb on + strandat 847.468 kb on + strandat 847.469 kb on - strandat 847.469 kb on - strandat 847.469 kb on - strandat 847.469 kb on - strandat 847.585 kb on + strand, within Psyr_0744at 847.586 kb on - strand, within Psyr_0744at 847.613 kb on + strand, within Psyr_0744at 847.613 kb on + strand, within Psyr_0744at 847.675 kb on + strand, within Psyr_0744at 847.675 kb on + strand, within Psyr_0744at 847.675 kb on + strand, within Psyr_0744at 847.726 kb on + strand, within Psyr_0744at 847.726 kb on + strand, within Psyr_0744at 847.726 kb on + strand, within Psyr_0744at 847.726 kb on + strand, within Psyr_0744at 847.727 kb on - strand, within Psyr_0744at 847.727 kb on - strand, within Psyr_0744at 847.727 kb on - strand, within Psyr_0744at 847.727 kb on - strand, within Psyr_0744at 847.727 kb on - strand, within Psyr_0744at 847.809 kb on + strand, within Psyr_0744at 847.810 kb on - strand, within Psyr_0744at 847.810 kb on - strand, within Psyr_0744at 847.810 kb on - strand, within Psyr_0744at 847.810 kb on - strand, within Psyr_0744at 848.084 kb on + strandat 848.084 kb on + strandat 848.084 kb on + strandat 848.084 kb on + strandat 848.088 kb on + strandat 848.088 kb on + strandat 848.088 kb on + strandat 848.101 kb on + strandat 848.102 kb on - strandat 848.133 kb on - strandat 848.153 kb on + strandat 848.153 kb on + strandat 848.153 kb on + strandat 848.153 kb on + strandat 848.153 kb on + strandat 848.153 kb on + strandat 848.153 kb on + strandat 848.153 kb on + strandat 848.153 kb on + strandat 848.153 kb on + strandat 848.153 kb on + strandat 848.154 kb on - strand, within Psyr_0745at 848.154 kb on - strand, within Psyr_0745at 848.154 kb on - strand, within Psyr_0745at 848.154 kb on - strand, within Psyr_0745at 848.154 kb on - strand, within Psyr_0745at 848.154 kb on - strand, within Psyr_0745at 848.154 kb on - strand, within Psyr_0745at 848.154 kb on - strand, within Psyr_0745at 848.187 kb on - strand, within Psyr_0745at 848.501 kb on + strand, within Psyr_0745at 848.502 kb on - strand, within Psyr_0745at 848.502 kb on - strand, within Psyr_0745at 848.502 kb on - strand, within Psyr_0745at 848.502 kb on - strand, within Psyr_0745at 848.540 kb on - strandat 848.661 kb on + strandat 848.661 kb on + strandat 848.685 kb on + strand, within Psyr_0746at 848.686 kb on - strand, within Psyr_0746at 848.689 kb on - strand, within Psyr_0746at 848.738 kb on + strand, within Psyr_0746at 848.738 kb on + strand, within Psyr_0746at 848.739 kb on - strand, within Psyr_0746at 848.848 kb on + strand, within Psyr_0746at 848.849 kb on - strand, within Psyr_0746at 849.023 kb on + strandat 849.024 kb on - strandat 849.024 kb on - strandat 849.024 kb on - strandat 849.024 kb on - strandat 849.079 kb on + strand, within Psyr_0747at 849.079 kb on + strand, within Psyr_0747at 849.079 kb on + strand, within Psyr_0747at 849.080 kb on - strand, within Psyr_0747at 849.184 kb on - strand, within Psyr_0747at 849.204 kb on + strand, within Psyr_0747at 849.204 kb on + strand, within Psyr_0747at 849.204 kb on + strand, within Psyr_0747at 849.205 kb on - strand, within Psyr_0747at 849.205 kb on - strand, within Psyr_0747at 849.205 kb on - strand, within Psyr_0747at 849.269 kb on + strand, within Psyr_0747at 849.276 kb on + strand, within Psyr_0747at 849.276 kb on + strand, within Psyr_0747at 849.276 kb on + strand, within Psyr_0747at 849.276 kb on + strand, within Psyr_0747at 849.276 kb on + strand, within Psyr_0747at 849.276 kb on + strand, within Psyr_0747at 849.276 kb on + strand, within Psyr_0747at 849.276 kb on + strand, within Psyr_0747at 849.277 kb on - strand, within Psyr_0747at 849.277 kb on - strand, within Psyr_0747at 849.277 kb on - strand, within Psyr_0747at 849.277 kb on - strand, within Psyr_0747at 849.277 kb on - strand, within Psyr_0747at 849.277 kb on - strand, within Psyr_0747at 849.277 kb on - strand, within Psyr_0747at 849.277 kb on - strand, within Psyr_0747at 849.277 kb on - strand, within Psyr_0747at 849.277 kb on - strand, within Psyr_0747at 849.277 kb on - strand, within Psyr_0747at 849.310 kb on - strandat 849.324 kb on - strandat 849.361 kb on + strandat 849.362 kb on - strandat 849.362 kb on - strandat 849.387 kb on - strandat 849.390 kb on + strandat 849.390 kb on + strandat 849.390 kb on + strandat 849.391 kb on - strandat 849.399 kb on + strandat 849.399 kb on + strandat 849.399 kb on + strandat 849.403 kb on - strandat 849.403 kb on - strandat 849.428 kb on + strandat 849.428 kb on + strandat 849.428 kb on + strandat 849.429 kb on - strandat 849.429 kb on - strandat 849.429 kb on - strandat 849.432 kb on + strandat 849.432 kb on + strandat 849.432 kb on + strandat 849.433 kb on - strandat 849.433 kb on - strandat 849.453 kb on + strandat 849.532 kb on - strandat 849.534 kb on + strandat 849.534 kb on + strandat 849.535 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Rifampicin 0.1 mg/ml
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847,232 + Psyr_0743 0.64 +0.7
847,232 + Psyr_0743 0.64 +0.8
847,232 + Psyr_0743 0.64 -0.4
847,232 + Psyr_0743 0.64 +0.7
847,233 - Psyr_0743 0.65 +0.3
847,233 - Psyr_0743 0.65 +0.9
847,233 - Psyr_0743 0.65 +0.4
847,233 - Psyr_0743 0.65 +0.5
847,233 - Psyr_0743 0.65 -0.9
847,233 - Psyr_0743 0.65 +0.3
847,235 + Psyr_0743 0.65 +0.4
847,236 - Psyr_0743 0.65 +3.9
847,236 - Psyr_0743 0.65 +1.0
847,236 - Psyr_0743 0.65 +2.0
847,370 + -2.2
847,371 - +0.2
847,454 - -1.5
847,468 + -1.0
847,468 + +0.2
847,469 - -0.9
847,469 - -0.2
847,469 - +0.1
847,469 - +0.6
847,585 + Psyr_0744 0.19 -0.8
847,586 - Psyr_0744 0.19 -0.9
847,613 + Psyr_0744 0.23 -0.5
847,613 + Psyr_0744 0.23 +1.2
847,675 + Psyr_0744 0.32 +0.7
847,675 + Psyr_0744 0.32 +1.8
847,675 + Psyr_0744 0.32 +0.9
847,726 + Psyr_0744 0.39 +1.4
847,726 + Psyr_0744 0.39 -0.7
847,726 + Psyr_0744 0.39 -0.2
847,726 + Psyr_0744 0.39 -0.3
847,727 - Psyr_0744 0.39 -1.1
847,727 - Psyr_0744 0.39 -2.6
847,727 - Psyr_0744 0.39 -0.4
847,727 - Psyr_0744 0.39 -1.0
847,727 - Psyr_0744 0.39 -0.4
847,809 + Psyr_0744 0.51 +0.3
847,810 - Psyr_0744 0.51 +0.1
847,810 - Psyr_0744 0.51 +0.1
847,810 - Psyr_0744 0.51 -0.4
847,810 - Psyr_0744 0.51 -1.0
848,084 + -0.5
848,084 + +0.1
848,084 + +0.0
848,084 + -0.7
848,088 + +0.2
848,088 + +0.5
848,088 + -0.1
848,101 + +0.2
848,102 - +0.7
848,133 - -0.3
848,153 + -0.3
848,153 + +0.3
848,153 + +0.2
848,153 + +0.1
848,153 + -1.0
848,153 + -1.1
848,153 + -0.1
848,153 + +0.0
848,153 + +0.9
848,153 + +0.5
848,153 + -2.6
848,154 - Psyr_0745 0.23 -2.6
848,154 - Psyr_0745 0.23 -1.5
848,154 - Psyr_0745 0.23 -0.2
848,154 - Psyr_0745 0.23 +0.7
848,154 - Psyr_0745 0.23 -1.8
848,154 - Psyr_0745 0.23 +0.6
848,154 - Psyr_0745 0.23 +0.3
848,154 - Psyr_0745 0.23 -0.4
848,187 - Psyr_0745 0.29 -0.2
848,501 + Psyr_0745 0.87 +0.3
848,502 - Psyr_0745 0.87 -0.3
848,502 - Psyr_0745 0.87 -1.2
848,502 - Psyr_0745 0.87 -1.5
848,502 - Psyr_0745 0.87 -0.9
848,540 - +0.8
848,661 + +1.0
848,661 + +1.2
848,685 + Psyr_0746 0.15 +0.6
848,686 - Psyr_0746 0.15 -0.5
848,689 - Psyr_0746 0.16 -0.9
848,738 + Psyr_0746 0.29 -0.5
848,738 + Psyr_0746 0.29 -1.0
848,739 - Psyr_0746 0.30 +0.4
848,848 + Psyr_0746 0.59 -0.8
848,849 - Psyr_0746 0.60 -0.8
849,023 + +2.2
849,024 - +2.0
849,024 - -1.0
849,024 - +0.6
849,024 - +0.2
849,079 + Psyr_0747 0.18 -1.4
849,079 + Psyr_0747 0.18 +0.1
849,079 + Psyr_0747 0.18 +0.7
849,080 - Psyr_0747 0.18 +0.4
849,184 - Psyr_0747 0.51 -0.3
849,204 + Psyr_0747 0.57 -2.1
849,204 + Psyr_0747 0.57 -0.2
849,204 + Psyr_0747 0.57 +0.2
849,205 - Psyr_0747 0.58 +0.4
849,205 - Psyr_0747 0.58 -1.8
849,205 - Psyr_0747 0.58 -0.2
849,269 + Psyr_0747 0.78 +0.4
849,276 + Psyr_0747 0.80 +1.6
849,276 + Psyr_0747 0.80 -0.2
849,276 + Psyr_0747 0.80 +1.6
849,276 + Psyr_0747 0.80 +0.3
849,276 + Psyr_0747 0.80 -2.6
849,276 + Psyr_0747 0.80 -1.0
849,276 + Psyr_0747 0.80 +0.6
849,276 + Psyr_0747 0.80 +0.2
849,277 - Psyr_0747 0.80 +0.4
849,277 - Psyr_0747 0.80 +0.3
849,277 - Psyr_0747 0.80 -0.4
849,277 - Psyr_0747 0.80 -0.5
849,277 - Psyr_0747 0.80 +2.0
849,277 - Psyr_0747 0.80 -0.3
849,277 - Psyr_0747 0.80 +1.6
849,277 - Psyr_0747 0.80 -1.8
849,277 - Psyr_0747 0.80 -0.2
849,277 - Psyr_0747 0.80 -0.5
849,277 - Psyr_0747 0.80 -0.4
849,310 - -0.3
849,324 - -0.3
849,361 + -0.6
849,362 - +3.6
849,362 - -1.4
849,387 - +0.2
849,390 + -0.1
849,390 + +0.1
849,390 + -0.7
849,391 - -0.3
849,399 + +1.2
849,399 + +0.2
849,399 + -1.4
849,403 - +0.6
849,403 - -1.0
849,428 + -0.2
849,428 + -0.0
849,428 + +1.8
849,429 - +0.3
849,429 - -0.9
849,429 - +0.7
849,432 + -1.0
849,432 + -0.1
849,432 + +0.2
849,433 - +1.0
849,433 - +0.9
849,453 + -0.8
849,532 - -0.2
849,534 + -1.4
849,534 + -0.1
849,535 - +0.7

Or see this region's nucleotide sequence