Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0369

Experiment: KB with Rifampicin 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0367 and Psyr_0368 are separated by 180 nucleotidesPsyr_0368 and Psyr_0369 are separated by 3 nucleotidesPsyr_0369 and Psyr_0370 are separated by 251 nucleotides Psyr_0367: Psyr_0367 - formimidoylglutamate deiminase, at 391,324 to 392,688 _0367 Psyr_0368: Psyr_0368 - lipoprotein Blc, at 392,869 to 393,447 _0368 Psyr_0369: Psyr_0369 - lipoprotein, putative, at 393,451 to 393,705 _0369 Psyr_0370: Psyr_0370 - D-fructose 1,6-bisphosphatase, at 393,957 to 394,967 _0370 Position (kb) 393 394Strain fitness (log2 ratio) -2 -1 0 1 2 3at 392.512 kb on + strand, within Psyr_0367at 392.512 kb on + strand, within Psyr_0367at 392.513 kb on - strand, within Psyr_0367at 392.513 kb on - strand, within Psyr_0367at 392.513 kb on - strand, within Psyr_0367at 392.930 kb on + strand, within Psyr_0368at 392.931 kb on - strand, within Psyr_0368at 392.991 kb on + strand, within Psyr_0368at 392.992 kb on - strand, within Psyr_0368at 392.992 kb on - strand, within Psyr_0368at 393.011 kb on + strand, within Psyr_0368at 393.011 kb on + strand, within Psyr_0368at 393.011 kb on + strand, within Psyr_0368at 393.011 kb on + strand, within Psyr_0368at 393.012 kb on - strand, within Psyr_0368at 393.012 kb on - strand, within Psyr_0368at 393.249 kb on + strand, within Psyr_0368at 393.249 kb on + strand, within Psyr_0368at 393.249 kb on + strand, within Psyr_0368at 393.249 kb on + strand, within Psyr_0368at 393.249 kb on + strand, within Psyr_0368at 393.249 kb on + strand, within Psyr_0368at 393.249 kb on + strand, within Psyr_0368at 393.249 kb on + strand, within Psyr_0368at 393.249 kb on + strand, within Psyr_0368at 393.249 kb on + strand, within Psyr_0368at 393.249 kb on + strand, within Psyr_0368at 393.250 kb on - strand, within Psyr_0368at 393.250 kb on - strand, within Psyr_0368at 393.250 kb on - strand, within Psyr_0368at 393.250 kb on - strand, within Psyr_0368at 393.250 kb on - strand, within Psyr_0368at 393.250 kb on - strand, within Psyr_0368at 393.250 kb on - strand, within Psyr_0368at 393.250 kb on - strand, within Psyr_0368at 393.250 kb on - strand, within Psyr_0368at 393.250 kb on - strand, within Psyr_0368at 393.250 kb on - strand, within Psyr_0368at 393.327 kb on - strand, within Psyr_0368at 393.430 kb on + strandat 393.452 kb on + strandat 393.453 kb on - strandat 393.453 kb on - strandat 393.497 kb on + strand, within Psyr_0369at 393.498 kb on - strand, within Psyr_0369at 393.510 kb on + strand, within Psyr_0369at 393.510 kb on + strand, within Psyr_0369at 393.511 kb on - strand, within Psyr_0369at 393.629 kb on + strand, within Psyr_0369at 393.629 kb on + strand, within Psyr_0369at 393.682 kb on + strandat 393.683 kb on - strandat 393.711 kb on + strandat 393.711 kb on + strandat 393.711 kb on + strandat 393.711 kb on + strandat 393.711 kb on + strandat 393.711 kb on + strandat 393.711 kb on + strandat 393.711 kb on + strandat 393.711 kb on + strandat 393.711 kb on + strandat 393.711 kb on + strandat 393.711 kb on + strandat 393.711 kb on + strandat 393.711 kb on + strandat 393.711 kb on + strandat 393.711 kb on + strandat 393.711 kb on + strandat 393.712 kb on - strandat 393.712 kb on - strandat 393.712 kb on - strandat 393.712 kb on - strandat 393.712 kb on - strandat 393.712 kb on - strandat 393.712 kb on - strandat 393.712 kb on - strandat 393.712 kb on - strandat 393.712 kb on - strandat 393.712 kb on - strandat 393.712 kb on - strandat 393.785 kb on + strandat 393.785 kb on + strandat 393.786 kb on - strandat 393.786 kb on - strandat 393.786 kb on - strandat 393.829 kb on + strandat 393.845 kb on + strandat 393.845 kb on + strandat 393.959 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Rifampicin 0.1 mg/ml
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392,512 + Psyr_0367 0.87 +0.4
392,512 + Psyr_0367 0.87 +1.1
392,513 - Psyr_0367 0.87 -0.3
392,513 - Psyr_0367 0.87 +0.1
392,513 - Psyr_0367 0.87 +1.0
392,930 + Psyr_0368 0.11 -0.4
392,931 - Psyr_0368 0.11 +0.5
392,991 + Psyr_0368 0.21 -0.6
392,992 - Psyr_0368 0.21 +0.0
392,992 - Psyr_0368 0.21 -2.6
393,011 + Psyr_0368 0.25 +0.8
393,011 + Psyr_0368 0.25 +0.9
393,011 + Psyr_0368 0.25 +0.3
393,011 + Psyr_0368 0.25 -1.2
393,012 - Psyr_0368 0.25 -1.0
393,012 - Psyr_0368 0.25 +0.1
393,249 + Psyr_0368 0.66 +1.8
393,249 + Psyr_0368 0.66 -0.4
393,249 + Psyr_0368 0.66 -0.1
393,249 + Psyr_0368 0.66 -1.5
393,249 + Psyr_0368 0.66 +1.6
393,249 + Psyr_0368 0.66 +0.6
393,249 + Psyr_0368 0.66 +1.8
393,249 + Psyr_0368 0.66 -0.6
393,249 + Psyr_0368 0.66 +0.7
393,249 + Psyr_0368 0.66 -0.3
393,249 + Psyr_0368 0.66 -0.6
393,250 - Psyr_0368 0.66 +0.2
393,250 - Psyr_0368 0.66 +0.8
393,250 - Psyr_0368 0.66 -0.3
393,250 - Psyr_0368 0.66 +2.0
393,250 - Psyr_0368 0.66 -1.0
393,250 - Psyr_0368 0.66 +0.4
393,250 - Psyr_0368 0.66 -0.8
393,250 - Psyr_0368 0.66 +0.8
393,250 - Psyr_0368 0.66 -0.9
393,250 - Psyr_0368 0.66 +0.2
393,250 - Psyr_0368 0.66 -0.3
393,327 - Psyr_0368 0.79 +1.5
393,430 + -0.9
393,452 + +0.7
393,453 - +0.5
393,453 - +2.0
393,497 + Psyr_0369 0.18 -1.8
393,498 - Psyr_0369 0.18 -1.3
393,510 + Psyr_0369 0.23 -0.6
393,510 + Psyr_0369 0.23 -1.0
393,511 - Psyr_0369 0.24 -0.5
393,629 + Psyr_0369 0.70 -1.2
393,629 + Psyr_0369 0.70 -1.3
393,682 + +0.0
393,683 - +0.6
393,711 + +0.6
393,711 + +0.1
393,711 + +0.3
393,711 + +0.0
393,711 + -1.0
393,711 + +0.1
393,711 + +0.7
393,711 + +0.3
393,711 + +1.0
393,711 + -0.3
393,711 + -0.4
393,711 + -1.8
393,711 + +0.6
393,711 + -0.1
393,711 + +1.0
393,711 + +0.3
393,711 + -0.3
393,712 - +0.9
393,712 - -0.3
393,712 - -0.3
393,712 - +3.3
393,712 - +0.5
393,712 - +0.4
393,712 - +0.1
393,712 - +0.0
393,712 - +1.3
393,712 - +0.3
393,712 - +0.4
393,712 - +0.1
393,785 + -1.1
393,785 + -0.2
393,786 - +1.3
393,786 - -0.7
393,786 - +0.9
393,829 + -1.6
393,845 + +0.5
393,845 + -0.7
393,959 - -0.5

Or see this region's nucleotide sequence