Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0356

Experiment: KB with Rifampicin 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0355 and Psyr_0356 are separated by 577 nucleotidesPsyr_0356 and Psyr_0357 are separated by 3 nucleotidesPsyr_0357 and Psyr_0358 overlap by 4 nucleotides Psyr_0355: Psyr_0355 - conserved hypothetical protein, at 380,690 to 381,409 _0355 Psyr_0356: Psyr_0356 - L-cystine ABC transporter ATP-binding protein / Diaminopimelate ABC transporter ATP-binding protein, at 381,987 to 382,730 _0356 Psyr_0357: Psyr_0357 - Diaminopimelate ABC transporter membrane protein / L-cystine ABC transporter membrane protein, at 382,734 to 383,402 _0357 Psyr_0358: Psyr_0358 - Diaminopimelate-binding protein / L-cystine-binding protein, at 383,399 to 384,196 _0358 Position (kb) 381 382 383Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 380.990 kb on + strand, within Psyr_0355at 380.990 kb on + strand, within Psyr_0355at 380.990 kb on + strand, within Psyr_0355at 381.009 kb on + strand, within Psyr_0355at 381.009 kb on + strand, within Psyr_0355at 381.009 kb on + strand, within Psyr_0355at 381.009 kb on + strand, within Psyr_0355at 381.009 kb on + strand, within Psyr_0355at 381.009 kb on + strand, within Psyr_0355at 381.009 kb on + strand, within Psyr_0355at 381.009 kb on + strand, within Psyr_0355at 381.009 kb on + strand, within Psyr_0355at 381.010 kb on - strand, within Psyr_0355at 381.010 kb on - strand, within Psyr_0355at 381.010 kb on - strand, within Psyr_0355at 381.010 kb on - strand, within Psyr_0355at 381.010 kb on - strand, within Psyr_0355at 381.010 kb on - strand, within Psyr_0355at 381.010 kb on - strand, within Psyr_0355at 381.086 kb on + strand, within Psyr_0355at 381.086 kb on + strand, within Psyr_0355at 381.086 kb on + strand, within Psyr_0355at 381.087 kb on - strand, within Psyr_0355at 381.087 kb on - strand, within Psyr_0355at 381.141 kb on + strand, within Psyr_0355at 381.141 kb on + strand, within Psyr_0355at 381.141 kb on + strand, within Psyr_0355at 381.141 kb on + strand, within Psyr_0355at 381.141 kb on + strand, within Psyr_0355at 381.142 kb on - strand, within Psyr_0355at 381.142 kb on - strand, within Psyr_0355at 381.142 kb on - strand, within Psyr_0355at 381.142 kb on - strand, within Psyr_0355at 381.142 kb on - strand, within Psyr_0355at 381.142 kb on - strand, within Psyr_0355at 381.142 kb on - strand, within Psyr_0355at 381.142 kb on - strand, within Psyr_0355at 381.142 kb on - strand, within Psyr_0355at 381.142 kb on - strand, within Psyr_0355at 381.142 kb on - strand, within Psyr_0355at 381.142 kb on - strand, within Psyr_0355at 381.142 kb on - strand, within Psyr_0355at 381.142 kb on - strand, within Psyr_0355at 381.185 kb on + strand, within Psyr_0355at 381.185 kb on + strand, within Psyr_0355at 381.185 kb on + strand, within Psyr_0355at 381.186 kb on - strand, within Psyr_0355at 381.186 kb on - strand, within Psyr_0355at 381.186 kb on - strand, within Psyr_0355at 381.237 kb on + strand, within Psyr_0355at 381.237 kb on + strand, within Psyr_0355at 381.237 kb on + strand, within Psyr_0355at 381.238 kb on - strand, within Psyr_0355at 381.332 kb on + strand, within Psyr_0355at 381.332 kb on + strand, within Psyr_0355at 381.332 kb on + strand, within Psyr_0355at 381.333 kb on - strand, within Psyr_0355at 381.333 kb on - strand, within Psyr_0355at 381.380 kb on - strandat 381.434 kb on - strandat 381.434 kb on - strandat 381.456 kb on - strandat 381.502 kb on + strandat 381.677 kb on - strandat 381.677 kb on - strandat 381.683 kb on + strandat 381.683 kb on + strandat 381.683 kb on + strandat 381.683 kb on + strandat 381.683 kb on + strandat 381.683 kb on + strandat 381.684 kb on - strandat 381.709 kb on + strandat 381.732 kb on + strandat 381.732 kb on + strandat 381.732 kb on + strandat 381.733 kb on - strandat 381.733 kb on - strandat 381.841 kb on + strandat 381.841 kb on + strandat 382.600 kb on - strand, within Psyr_0356at 382.600 kb on - strand, within Psyr_0356at 382.726 kb on - strandat 382.726 kb on - strandat 382.726 kb on - strandat 382.726 kb on - strandat 382.813 kb on + strand, within Psyr_0357at 382.813 kb on + strand, within Psyr_0357at 382.814 kb on - strand, within Psyr_0357at 382.834 kb on + strand, within Psyr_0357at 382.834 kb on + strand, within Psyr_0357at 382.834 kb on + strand, within Psyr_0357at 382.834 kb on + strand, within Psyr_0357at 382.834 kb on + strand, within Psyr_0357at 382.834 kb on + strand, within Psyr_0357at 382.834 kb on + strand, within Psyr_0357at 382.834 kb on + strand, within Psyr_0357at 382.835 kb on - strand, within Psyr_0357at 382.835 kb on - strand, within Psyr_0357at 382.835 kb on - strand, within Psyr_0357at 382.835 kb on - strand, within Psyr_0357at 382.835 kb on - strand, within Psyr_0357at 382.835 kb on - strand, within Psyr_0357at 382.835 kb on - strand, within Psyr_0357at 382.835 kb on - strand, within Psyr_0357at 382.835 kb on - strand, within Psyr_0357at 382.835 kb on - strand, within Psyr_0357at 383.027 kb on + strand, within Psyr_0357at 383.028 kb on - strand, within Psyr_0357at 383.105 kb on + strand, within Psyr_0357at 383.106 kb on - strand, within Psyr_0357at 383.176 kb on + strand, within Psyr_0357at 383.176 kb on + strand, within Psyr_0357at 383.177 kb on - strand, within Psyr_0357at 383.177 kb on - strand, within Psyr_0357at 383.227 kb on + strand, within Psyr_0357at 383.227 kb on + strand, within Psyr_0357at 383.227 kb on + strand, within Psyr_0357at 383.227 kb on + strand, within Psyr_0357at 383.227 kb on + strand, within Psyr_0357at 383.227 kb on + strand, within Psyr_0357at 383.227 kb on + strand, within Psyr_0357at 383.227 kb on + strand, within Psyr_0357at 383.227 kb on + strand, within Psyr_0357at 383.227 kb on + strand, within Psyr_0357at 383.227 kb on + strand, within Psyr_0357at 383.227 kb on + strand, within Psyr_0357at 383.228 kb on - strand, within Psyr_0357at 383.228 kb on - strand, within Psyr_0357at 383.228 kb on - strand, within Psyr_0357at 383.228 kb on - strand, within Psyr_0357at 383.228 kb on - strand, within Psyr_0357at 383.228 kb on - strand, within Psyr_0357at 383.338 kb on + strandat 383.338 kb on + strandat 383.338 kb on + strandat 383.339 kb on - strandat 383.339 kb on - strandat 383.341 kb on + strandat 383.341 kb on + strandat 383.341 kb on + strandat 383.342 kb on - strandat 383.512 kb on + strand, within Psyr_0358at 383.636 kb on + strand, within Psyr_0358at 383.636 kb on + strand, within Psyr_0358at 383.636 kb on + strand, within Psyr_0358at 383.636 kb on + strand, within Psyr_0358at 383.636 kb on + strand, within Psyr_0358at 383.637 kb on - strand, within Psyr_0358at 383.637 kb on - strand, within Psyr_0358at 383.637 kb on - strand, within Psyr_0358at 383.637 kb on - strand, within Psyr_0358at 383.674 kb on - strand, within Psyr_0358at 383.674 kb on - strand, within Psyr_0358at 383.674 kb on - strand, within Psyr_0358at 383.674 kb on - strand, within Psyr_0358at 383.721 kb on + strand, within Psyr_0358at 383.721 kb on + strand, within Psyr_0358at 383.721 kb on + strand, within Psyr_0358at 383.722 kb on - strand, within Psyr_0358at 383.722 kb on - strand, within Psyr_0358

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Rifampicin 0.1 mg/ml
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380,990 + Psyr_0355 0.42 -0.5
380,990 + Psyr_0355 0.42 +0.5
380,990 + Psyr_0355 0.42 -0.1
381,009 + Psyr_0355 0.44 +0.6
381,009 + Psyr_0355 0.44 +3.0
381,009 + Psyr_0355 0.44 +0.8
381,009 + Psyr_0355 0.44 +2.0
381,009 + Psyr_0355 0.44 +0.1
381,009 + Psyr_0355 0.44 -0.1
381,009 + Psyr_0355 0.44 +0.4
381,009 + Psyr_0355 0.44 -1.4
381,009 + Psyr_0355 0.44 +1.5
381,010 - Psyr_0355 0.44 +0.1
381,010 - Psyr_0355 0.44 -0.5
381,010 - Psyr_0355 0.44 +0.3
381,010 - Psyr_0355 0.44 +0.5
381,010 - Psyr_0355 0.44 +0.9
381,010 - Psyr_0355 0.44 -3.5
381,010 - Psyr_0355 0.44 -1.6
381,086 + Psyr_0355 0.55 -0.0
381,086 + Psyr_0355 0.55 -0.1
381,086 + Psyr_0355 0.55 -0.0
381,087 - Psyr_0355 0.55 -1.2
381,087 - Psyr_0355 0.55 +2.4
381,141 + Psyr_0355 0.63 +0.9
381,141 + Psyr_0355 0.63 +0.1
381,141 + Psyr_0355 0.63 +1.0
381,141 + Psyr_0355 0.63 -0.2
381,141 + Psyr_0355 0.63 -0.1
381,142 - Psyr_0355 0.63 +1.7
381,142 - Psyr_0355 0.63 +0.5
381,142 - Psyr_0355 0.63 +1.3
381,142 - Psyr_0355 0.63 +1.3
381,142 - Psyr_0355 0.63 -0.0
381,142 - Psyr_0355 0.63 -1.3
381,142 - Psyr_0355 0.63 +0.1
381,142 - Psyr_0355 0.63 +0.3
381,142 - Psyr_0355 0.63 -0.1
381,142 - Psyr_0355 0.63 -1.5
381,142 - Psyr_0355 0.63 +0.4
381,142 - Psyr_0355 0.63 +3.6
381,142 - Psyr_0355 0.63 -0.1
381,142 - Psyr_0355 0.63 +1.0
381,185 + Psyr_0355 0.69 -1.5
381,185 + Psyr_0355 0.69 -0.2
381,185 + Psyr_0355 0.69 +0.1
381,186 - Psyr_0355 0.69 +0.2
381,186 - Psyr_0355 0.69 -1.0
381,186 - Psyr_0355 0.69 +0.0
381,237 + Psyr_0355 0.76 -0.2
381,237 + Psyr_0355 0.76 +0.3
381,237 + Psyr_0355 0.76 -0.8
381,238 - Psyr_0355 0.76 -0.5
381,332 + Psyr_0355 0.89 +0.1
381,332 + Psyr_0355 0.89 +0.9
381,332 + Psyr_0355 0.89 -0.4
381,333 - Psyr_0355 0.89 +0.1
381,333 - Psyr_0355 0.89 +1.0
381,380 - +0.2
381,434 - +0.9
381,434 - +0.1
381,456 - +0.0
381,502 + +0.4
381,677 - +0.3
381,677 - -0.1
381,683 + +0.1
381,683 + +1.6
381,683 + +0.5
381,683 + -1.0
381,683 + -0.6
381,683 + -0.1
381,684 - +0.9
381,709 + +0.2
381,732 + +1.3
381,732 + +0.4
381,732 + +0.0
381,733 - +0.8
381,733 - +0.0
381,841 + -0.5
381,841 + -0.7
382,600 - Psyr_0356 0.82 -0.4
382,600 - Psyr_0356 0.82 -0.6
382,726 - -0.6
382,726 - +0.4
382,726 - +1.3
382,726 - +0.4
382,813 + Psyr_0357 0.12 -1.6
382,813 + Psyr_0357 0.12 +1.1
382,814 - Psyr_0357 0.12 -1.3
382,834 + Psyr_0357 0.15 +0.7
382,834 + Psyr_0357 0.15 +0.1
382,834 + Psyr_0357 0.15 +0.9
382,834 + Psyr_0357 0.15 -0.4
382,834 + Psyr_0357 0.15 -2.6
382,834 + Psyr_0357 0.15 +1.2
382,834 + Psyr_0357 0.15 +0.1
382,834 + Psyr_0357 0.15 +1.6
382,835 - Psyr_0357 0.15 +0.1
382,835 - Psyr_0357 0.15 +0.3
382,835 - Psyr_0357 0.15 -0.7
382,835 - Psyr_0357 0.15 +0.2
382,835 - Psyr_0357 0.15 +2.8
382,835 - Psyr_0357 0.15 +1.0
382,835 - Psyr_0357 0.15 -0.2
382,835 - Psyr_0357 0.15 +2.0
382,835 - Psyr_0357 0.15 +0.0
382,835 - Psyr_0357 0.15 +1.4
383,027 + Psyr_0357 0.44 +0.0
383,028 - Psyr_0357 0.44 -0.1
383,105 + Psyr_0357 0.55 -0.9
383,106 - Psyr_0357 0.56 +1.4
383,176 + Psyr_0357 0.66 +0.6
383,176 + Psyr_0357 0.66 +1.2
383,177 - Psyr_0357 0.66 +0.0
383,177 - Psyr_0357 0.66 +0.1
383,227 + Psyr_0357 0.74 -0.4
383,227 + Psyr_0357 0.74 +0.4
383,227 + Psyr_0357 0.74 +0.6
383,227 + Psyr_0357 0.74 -1.1
383,227 + Psyr_0357 0.74 -1.1
383,227 + Psyr_0357 0.74 +0.0
383,227 + Psyr_0357 0.74 +0.2
383,227 + Psyr_0357 0.74 +0.5
383,227 + Psyr_0357 0.74 -1.7
383,227 + Psyr_0357 0.74 -0.1
383,227 + Psyr_0357 0.74 -1.5
383,227 + Psyr_0357 0.74 +0.7
383,228 - Psyr_0357 0.74 -0.1
383,228 - Psyr_0357 0.74 +0.5
383,228 - Psyr_0357 0.74 -0.8
383,228 - Psyr_0357 0.74 +1.0
383,228 - Psyr_0357 0.74 +0.8
383,228 - Psyr_0357 0.74 -0.6
383,338 + +0.6
383,338 + -0.2
383,338 + +0.0
383,339 - -0.1
383,339 - -0.2
383,341 + -0.6
383,341 + +0.4
383,341 + +0.3
383,342 - +0.5
383,512 + Psyr_0358 0.14 -0.2
383,636 + Psyr_0358 0.30 +0.0
383,636 + Psyr_0358 0.30 -0.2
383,636 + Psyr_0358 0.30 -2.8
383,636 + Psyr_0358 0.30 -1.1
383,636 + Psyr_0358 0.30 -0.1
383,637 - Psyr_0358 0.30 -0.2
383,637 - Psyr_0358 0.30 -0.3
383,637 - Psyr_0358 0.30 -0.1
383,637 - Psyr_0358 0.30 +0.4
383,674 - Psyr_0358 0.34 +1.2
383,674 - Psyr_0358 0.34 +0.5
383,674 - Psyr_0358 0.34 -0.6
383,674 - Psyr_0358 0.34 -0.1
383,721 + Psyr_0358 0.40 -0.1
383,721 + Psyr_0358 0.40 +1.8
383,721 + Psyr_0358 0.40 +1.2
383,722 - Psyr_0358 0.40 +0.5
383,722 - Psyr_0358 0.40 +0.2

Or see this region's nucleotide sequence