Experiment: KB with Rifampicin 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0024 and Psyr_0025 overlap by 1 nucleotides Psyr_0025 and Psyr_0026 are separated by 184 nucleotides
Psyr_0024: Psyr_0024 - coproporphyrinogen oxidase, at 27,721 to 28,635
_0024
Psyr_0025: Psyr_0025 - shikimate dehydrogenase, at 28,635 to 29,459
_0025
Psyr_0026: Psyr_0026 - Sulfate transporter/antisigma-factor antagonist STAS:Sulphate transporter, at 29,644 to 31,212
_0026
Position (kb) 28
29
30 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 27.644 kb on + strand at 27.644 kb on + strand at 27.644 kb on + strand at 27.644 kb on + strand at 27.644 kb on + strand at 27.645 kb on - strand at 27.645 kb on - strand at 27.645 kb on - strand at 27.645 kb on - strand at 29.088 kb on - strand, within Psyr_0025 at 29.088 kb on - strand, within Psyr_0025 at 29.140 kb on + strand, within Psyr_0025 at 29.269 kb on - strand, within Psyr_0025 at 29.280 kb on + strand, within Psyr_0025 at 29.280 kb on + strand, within Psyr_0025 at 29.280 kb on + strand, within Psyr_0025 at 29.280 kb on + strand, within Psyr_0025 at 29.280 kb on + strand, within Psyr_0025 at 29.281 kb on - strand, within Psyr_0025 at 29.281 kb on - strand, within Psyr_0025 at 29.466 kb on - strand at 29.497 kb on + strand at 29.497 kb on + strand at 29.497 kb on + strand at 29.497 kb on + strand at 29.497 kb on + strand at 29.498 kb on - strand at 29.499 kb on + strand at 29.499 kb on + strand at 29.499 kb on + strand at 29.499 kb on + strand at 29.499 kb on + strand at 29.499 kb on + strand at 29.499 kb on + strand at 29.499 kb on + strand at 29.499 kb on + strand at 29.499 kb on + strand at 29.499 kb on + strand at 29.499 kb on + strand at 29.499 kb on + strand at 29.499 kb on + strand at 29.499 kb on + strand at 29.499 kb on + strand at 29.499 kb on + strand at 29.500 kb on - strand at 29.500 kb on - strand at 29.500 kb on - strand at 29.500 kb on - strand at 29.500 kb on - strand at 29.500 kb on - strand at 29.500 kb on - strand at 29.500 kb on - strand at 29.500 kb on - strand at 29.500 kb on - strand at 29.500 kb on - strand at 29.500 kb on - strand at 29.500 kb on - strand at 29.503 kb on + strand at 29.503 kb on + strand at 29.503 kb on + strand at 29.503 kb on + strand at 29.503 kb on + strand at 29.503 kb on + strand at 29.503 kb on + strand at 29.503 kb on + strand at 29.503 kb on + strand at 29.503 kb on + strand at 29.503 kb on + strand at 29.503 kb on + strand at 29.503 kb on + strand at 29.503 kb on + strand at 29.503 kb on + strand at 29.503 kb on + strand at 29.503 kb on + strand at 29.503 kb on + strand at 29.503 kb on + strand at 29.503 kb on + strand at 29.503 kb on + strand at 29.503 kb on + strand at 29.504 kb on - strand at 29.504 kb on - strand at 29.504 kb on - strand at 29.504 kb on - strand at 29.504 kb on - strand at 29.504 kb on - strand at 29.504 kb on - strand at 29.504 kb on - strand at 29.504 kb on - strand at 29.504 kb on - strand at 29.504 kb on - strand at 29.504 kb on - strand at 29.504 kb on - strand at 29.610 kb on + strand at 29.610 kb on + strand at 29.610 kb on + strand at 29.611 kb on - strand at 29.611 kb on - strand at 29.611 kb on - strand at 29.638 kb on + strand at 29.638 kb on + strand at 29.638 kb on + strand at 29.638 kb on + strand at 29.639 kb on - strand at 29.639 kb on - strand at 29.639 kb on - strand at 29.639 kb on - strand at 29.639 kb on - strand at 29.792 kb on + strand at 29.792 kb on + strand at 29.845 kb on - strand, within Psyr_0026 at 29.868 kb on - strand, within Psyr_0026 at 29.868 kb on - strand, within Psyr_0026 at 29.966 kb on + strand, within Psyr_0026 at 29.967 kb on - strand, within Psyr_0026 at 29.986 kb on + strand, within Psyr_0026 at 29.986 kb on + strand, within Psyr_0026 at 29.986 kb on + strand, within Psyr_0026 at 29.987 kb on - strand, within Psyr_0026 at 29.996 kb on + strand, within Psyr_0026 at 29.996 kb on + strand, within Psyr_0026 at 29.997 kb on - strand, within Psyr_0026 at 29.997 kb on - strand, within Psyr_0026 at 30.248 kb on + strand, within Psyr_0026 at 30.248 kb on + strand, within Psyr_0026 at 30.248 kb on + strand, within Psyr_0026
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Rifampicin 0.1 mg/ml remove 27,644 + +0.6 27,644 + -0.8 27,644 + +0.6 27,644 + -0.9 27,644 + -0.5 27,645 - -0.3 27,645 - -1.3 27,645 - +0.9 27,645 - +0.6 29,088 - Psyr_0025 0.55 -0.8 29,088 - Psyr_0025 0.55 -0.3 29,140 + Psyr_0025 0.61 -0.3 29,269 - Psyr_0025 0.77 +0.9 29,280 + Psyr_0025 0.78 +0.7 29,280 + Psyr_0025 0.78 +1.2 29,280 + Psyr_0025 0.78 -0.3 29,280 + Psyr_0025 0.78 -0.9 29,280 + Psyr_0025 0.78 +0.1 29,281 - Psyr_0025 0.78 +0.6 29,281 - Psyr_0025 0.78 +1.4 29,466 - +0.1 29,497 + +2.9 29,497 + +1.7 29,497 + +0.0 29,497 + +0.2 29,497 + -0.6 29,498 - +0.7 29,499 + -0.3 29,499 + +0.5 29,499 + +1.1 29,499 + -0.7 29,499 + +1.8 29,499 + +0.8 29,499 + +0.6 29,499 + +0.6 29,499 + +0.4 29,499 + +0.3 29,499 + -1.0 29,499 + -0.5 29,499 + -0.3 29,499 + -0.4 29,499 + +0.3 29,499 + +1.2 29,499 + -0.9 29,500 - -2.7 29,500 - -2.4 29,500 - +0.7 29,500 - -2.1 29,500 - +0.3 29,500 - -0.4 29,500 - +0.1 29,500 - +1.2 29,500 - +0.3 29,500 - +0.8 29,500 - -0.6 29,500 - -0.4 29,500 - +3.1 29,503 + -2.1 29,503 + -0.5 29,503 + +1.9 29,503 + +2.0 29,503 + +0.3 29,503 + +0.9 29,503 + +0.7 29,503 + +0.2 29,503 + -0.9 29,503 + -0.2 29,503 + -0.3 29,503 + -0.3 29,503 + +0.5 29,503 + -0.9 29,503 + +0.3 29,503 + -1.6 29,503 + +0.7 29,503 + +1.4 29,503 + -0.7 29,503 + -0.1 29,503 + +0.7 29,503 + +0.2 29,504 - +0.5 29,504 - -1.0 29,504 - -2.0 29,504 - -0.7 29,504 - +0.7 29,504 - -0.7 29,504 - +0.2 29,504 - +0.2 29,504 - +0.1 29,504 - +0.6 29,504 - +0.4 29,504 - -0.3 29,504 - +1.1 29,610 + -0.9 29,610 + +0.4 29,610 + -1.0 29,611 - -0.4 29,611 - -0.1 29,611 - +0.2 29,638 + -1.2 29,638 + -0.9 29,638 + +0.3 29,638 + +0.8 29,639 - +1.5 29,639 - -0.0 29,639 - +1.1 29,639 - +0.2 29,639 - -2.3 29,792 + -1.3 29,792 + -0.8 29,845 - Psyr_0026 0.13 -0.0 29,868 - Psyr_0026 0.14 -0.0 29,868 - Psyr_0026 0.14 -0.8 29,966 + Psyr_0026 0.21 +0.6 29,967 - Psyr_0026 0.21 +0.2 29,986 + Psyr_0026 0.22 -1.3 29,986 + Psyr_0026 0.22 -0.5 29,986 + Psyr_0026 0.22 -0.4 29,987 - Psyr_0026 0.22 -0.1 29,996 + Psyr_0026 0.22 -0.1 29,996 + Psyr_0026 0.22 +0.2 29,997 - Psyr_0026 0.22 -0.3 29,997 - Psyr_0026 0.22 -0.2 30,248 + Psyr_0026 0.38 +1.7 30,248 + Psyr_0026 0.38 +0.6 30,248 + Psyr_0026 0.38 -0.4
Or see this region's nucleotide sequence