Experiment: KB with Rifampicin 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0018 and Psyr_0019 are separated by 53 nucleotides Psyr_0019 and Psyr_0020 are separated by 125 nucleotides Psyr_0020 and Psyr_0021 are separated by 123 nucleotides
Psyr_0018: Psyr_0018 - methionyl-tRNA formyltransferase, at 22,042 to 22,986
_0018
Psyr_0019: Psyr_0019 - peptide deformylase, at 23,040 to 23,546
_0019
Psyr_0020: Psyr_0020 - Peptidoglycan-binding LysM, at 23,672 to 24,697
_0020
Psyr_0021: Psyr_0021 - DNA protecting protein DprA, at 24,821 to 25,939
_0021
Position (kb) 23
24
25 Strain fitness (log2 ratio) -2
-1
0
1
2 at 22.999 kb on - strand at 22.999 kb on - strand at 23.536 kb on - strand at 23.547 kb on - strand at 23.547 kb on - strand at 23.547 kb on - strand at 23.549 kb on - strand at 23.549 kb on - strand at 23.549 kb on - strand at 23.549 kb on - strand at 23.549 kb on - strand at 23.549 kb on - strand at 23.549 kb on - strand at 23.549 kb on - strand at 23.549 kb on - strand at 23.549 kb on - strand at 23.549 kb on - strand at 23.549 kb on - strand at 23.549 kb on - strand at 23.549 kb on - strand at 23.549 kb on - strand at 23.549 kb on - strand at 23.549 kb on - strand at 23.549 kb on - strand at 23.549 kb on - strand at 23.549 kb on - strand at 23.549 kb on - strand at 23.549 kb on - strand at 23.549 kb on - strand at 23.549 kb on - strand at 23.549 kb on - strand at 23.549 kb on - strand at 23.549 kb on - strand at 23.549 kb on - strand at 23.549 kb on - strand at 23.549 kb on - strand at 23.549 kb on - strand at 23.553 kb on - strand at 23.553 kb on - strand at 23.553 kb on - strand at 23.553 kb on - strand at 23.553 kb on - strand at 23.553 kb on - strand at 23.553 kb on - strand at 23.553 kb on - strand at 23.553 kb on - strand at 23.553 kb on - strand at 23.633 kb on - strand at 23.633 kb on - strand at 23.657 kb on - strand at 23.685 kb on + strand at 23.686 kb on - strand at 23.686 kb on - strand at 23.762 kb on + strand at 23.762 kb on + strand at 23.762 kb on + strand at 23.762 kb on + strand at 23.762 kb on + strand at 23.762 kb on + strand at 23.763 kb on - strand at 23.763 kb on - strand at 23.987 kb on - strand, within Psyr_0020 at 24.092 kb on + strand, within Psyr_0020 at 24.092 kb on + strand, within Psyr_0020 at 24.093 kb on - strand, within Psyr_0020 at 24.093 kb on - strand, within Psyr_0020 at 24.093 kb on - strand, within Psyr_0020 at 24.093 kb on - strand, within Psyr_0020 at 24.093 kb on - strand, within Psyr_0020 at 24.146 kb on + strand, within Psyr_0020 at 24.147 kb on - strand, within Psyr_0020 at 24.147 kb on - strand, within Psyr_0020 at 24.182 kb on + strand, within Psyr_0020 at 24.183 kb on - strand, within Psyr_0020 at 24.183 kb on - strand, within Psyr_0020 at 24.209 kb on + strand, within Psyr_0020 at 24.209 kb on + strand, within Psyr_0020 at 24.209 kb on + strand, within Psyr_0020 at 24.209 kb on + strand, within Psyr_0020 at 24.209 kb on + strand, within Psyr_0020 at 24.209 kb on + strand, within Psyr_0020 at 24.209 kb on + strand, within Psyr_0020 at 24.210 kb on - strand, within Psyr_0020 at 24.210 kb on - strand, within Psyr_0020 at 24.210 kb on - strand, within Psyr_0020 at 24.210 kb on - strand, within Psyr_0020 at 24.210 kb on - strand, within Psyr_0020 at 24.210 kb on - strand, within Psyr_0020 at 24.210 kb on - strand, within Psyr_0020 at 24.349 kb on - strand, within Psyr_0020 at 24.349 kb on - strand, within Psyr_0020 at 24.371 kb on - strand, within Psyr_0020 at 24.527 kb on + strand, within Psyr_0020 at 24.527 kb on + strand, within Psyr_0020 at 24.527 kb on + strand, within Psyr_0020 at 24.527 kb on + strand, within Psyr_0020 at 24.528 kb on - strand, within Psyr_0020 at 24.528 kb on - strand, within Psyr_0020 at 24.620 kb on + strand at 24.620 kb on + strand at 24.620 kb on + strand at 24.621 kb on - strand at 24.621 kb on - strand at 24.631 kb on + strand at 24.631 kb on + strand at 24.631 kb on + strand at 24.631 kb on + strand at 24.631 kb on + strand at 24.631 kb on + strand at 24.631 kb on + strand at 24.631 kb on + strand at 24.631 kb on + strand at 24.631 kb on + strand at 24.631 kb on + strand at 24.631 kb on + strand at 24.632 kb on - strand at 24.632 kb on - strand at 24.632 kb on - strand at 24.632 kb on - strand at 24.632 kb on - strand at 24.632 kb on - strand at 24.632 kb on - strand at 24.632 kb on - strand at 24.632 kb on - strand at 24.632 kb on - strand at 24.632 kb on - strand at 24.635 kb on + strand at 24.745 kb on + strand at 24.745 kb on + strand at 24.745 kb on + strand at 24.745 kb on + strand at 24.746 kb on - strand at 24.769 kb on - strand at 24.897 kb on + strand at 25.348 kb on + strand, within Psyr_0021 at 25.348 kb on + strand, within Psyr_0021 at 25.349 kb on - strand, within Psyr_0021 at 25.349 kb on - strand, within Psyr_0021 at 25.349 kb on - strand, within Psyr_0021 at 25.349 kb on - strand, within Psyr_0021 at 25.527 kb on + strand, within Psyr_0021 at 25.528 kb on - strand, within Psyr_0021 at 25.528 kb on - strand, within Psyr_0021 at 25.604 kb on + strand, within Psyr_0021 at 25.604 kb on + strand, within Psyr_0021 at 25.604 kb on + strand, within Psyr_0021 at 25.604 kb on + strand, within Psyr_0021 at 25.604 kb on + strand, within Psyr_0021 at 25.604 kb on + strand, within Psyr_0021 at 25.604 kb on + strand, within Psyr_0021 at 25.605 kb on - strand, within Psyr_0021 at 25.605 kb on - strand, within Psyr_0021 at 25.605 kb on - strand, within Psyr_0021 at 25.605 kb on - strand, within Psyr_0021 at 25.605 kb on - strand, within Psyr_0021 at 25.605 kb on - strand, within Psyr_0021 at 25.605 kb on - strand, within Psyr_0021 at 25.612 kb on - strand, within Psyr_0021 at 25.659 kb on + strand, within Psyr_0021 at 25.660 kb on - strand, within Psyr_0021 at 25.660 kb on - strand, within Psyr_0021
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Rifampicin 0.1 mg/ml remove 22,999 - -0.9 22,999 - +0.6 23,536 - -1.5 23,547 - +0.3 23,547 - -0.5 23,547 - -0.7 23,549 - -0.4 23,549 - -0.8 23,549 - -1.4 23,549 - +0.3 23,549 - -0.1 23,549 - -0.3 23,549 - +1.7 23,549 - -1.4 23,549 - +1.5 23,549 - -0.9 23,549 - -0.9 23,549 - -0.4 23,549 - +0.2 23,549 - -0.4 23,549 - -0.8 23,549 - -1.1 23,549 - +0.7 23,549 - -0.6 23,549 - +0.8 23,549 - -0.1 23,549 - -0.4 23,549 - +2.7 23,549 - -0.1 23,549 - +0.7 23,549 - -1.5 23,549 - -0.5 23,549 - +0.3 23,549 - -1.2 23,549 - +1.6 23,549 - -1.0 23,549 - -1.9 23,553 - -0.4 23,553 - -0.5 23,553 - +0.4 23,553 - +0.6 23,553 - +0.7 23,553 - +2.4 23,553 - -0.1 23,553 - -0.3 23,553 - -0.5 23,553 - +0.8 23,633 - -0.6 23,633 - -2.4 23,657 - -1.2 23,685 + +0.3 23,686 - -0.5 23,686 - -0.9 23,762 + -0.3 23,762 + -0.2 23,762 + -0.5 23,762 + -0.4 23,762 + -0.7 23,762 + -0.8 23,763 - +0.3 23,763 - -2.4 23,987 - Psyr_0020 0.31 -1.1 24,092 + Psyr_0020 0.41 -0.8 24,092 + Psyr_0020 0.41 -2.2 24,093 - Psyr_0020 0.41 -0.6 24,093 - Psyr_0020 0.41 -0.6 24,093 - Psyr_0020 0.41 -0.7 24,093 - Psyr_0020 0.41 +0.5 24,093 - Psyr_0020 0.41 +0.2 24,146 + Psyr_0020 0.46 -0.8 24,147 - Psyr_0020 0.46 -1.9 24,147 - Psyr_0020 0.46 -1.4 24,182 + Psyr_0020 0.50 -0.9 24,183 - Psyr_0020 0.50 +0.1 24,183 - Psyr_0020 0.50 -1.4 24,209 + Psyr_0020 0.52 -1.8 24,209 + Psyr_0020 0.52 -1.3 24,209 + Psyr_0020 0.52 -0.9 24,209 + Psyr_0020 0.52 -0.6 24,209 + Psyr_0020 0.52 +0.3 24,209 + Psyr_0020 0.52 +0.2 24,209 + Psyr_0020 0.52 +0.3 24,210 - Psyr_0020 0.52 +0.7 24,210 - Psyr_0020 0.52 +0.0 24,210 - Psyr_0020 0.52 -1.1 24,210 - Psyr_0020 0.52 +0.1 24,210 - Psyr_0020 0.52 +0.1 24,210 - Psyr_0020 0.52 -0.1 24,210 - Psyr_0020 0.52 +0.1 24,349 - Psyr_0020 0.66 -0.7 24,349 - Psyr_0020 0.66 -0.1 24,371 - Psyr_0020 0.68 +0.2 24,527 + Psyr_0020 0.83 -2.1 24,527 + Psyr_0020 0.83 -0.9 24,527 + Psyr_0020 0.83 -2.5 24,527 + Psyr_0020 0.83 +0.4 24,528 - Psyr_0020 0.83 -0.5 24,528 - Psyr_0020 0.83 -1.9 24,620 + -0.1 24,620 + +0.2 24,620 + -0.4 24,621 - -0.2 24,621 - -2.0 24,631 + +0.4 24,631 + +0.2 24,631 + +0.2 24,631 + -1.4 24,631 + -1.4 24,631 + -0.8 24,631 + +0.1 24,631 + -0.2 24,631 + +0.9 24,631 + +1.2 24,631 + +0.0 24,631 + +2.1 24,632 - -0.0 24,632 - -0.8 24,632 - +0.7 24,632 - -2.1 24,632 - -0.6 24,632 - -0.3 24,632 - -0.6 24,632 - -1.3 24,632 - +0.3 24,632 - -0.1 24,632 - -0.3 24,635 + -0.4 24,745 + -0.4 24,745 + +0.7 24,745 + +0.4 24,745 + -0.6 24,746 - +0.8 24,769 - -0.6 24,897 + -0.5 25,348 + Psyr_0021 0.47 +0.1 25,348 + Psyr_0021 0.47 -2.3 25,349 - Psyr_0021 0.47 -0.6 25,349 - Psyr_0021 0.47 -0.0 25,349 - Psyr_0021 0.47 +1.5 25,349 - Psyr_0021 0.47 +0.8 25,527 + Psyr_0021 0.63 -0.3 25,528 - Psyr_0021 0.63 -0.1 25,528 - Psyr_0021 0.63 -0.4 25,604 + Psyr_0021 0.70 -0.4 25,604 + Psyr_0021 0.70 +0.4 25,604 + Psyr_0021 0.70 +0.2 25,604 + Psyr_0021 0.70 +0.9 25,604 + Psyr_0021 0.70 -0.1 25,604 + Psyr_0021 0.70 -0.4 25,604 + Psyr_0021 0.70 +0.5 25,605 - Psyr_0021 0.70 +0.8 25,605 - Psyr_0021 0.70 -0.3 25,605 - Psyr_0021 0.70 -0.6 25,605 - Psyr_0021 0.70 -0.7 25,605 - Psyr_0021 0.70 +0.1 25,605 - Psyr_0021 0.70 -0.0 25,605 - Psyr_0021 0.70 +0.0 25,612 - Psyr_0021 0.71 -0.6 25,659 + Psyr_0021 0.75 -0.2 25,660 - Psyr_0021 0.75 +0.9 25,660 - Psyr_0021 0.75 +1.0
Or see this region's nucleotide sequence