Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS08570

Experiment: H2 N-free with 2g/L casaminos 10mM Ammonium chloride

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	H2 N-free with 2g/L casaminos 10mM Ammonium chloride
1,577,738	-		MMJJ_RS08565	0.53	-0.3
1,577,783	-		MMJJ_RS08565	0.56	-0.4
1,577,787	+		MMJJ_RS08565	0.56	+0.1
1,577,787	+		MMJJ_RS08565	0.56	-1.0
1,577,800	-		MMJJ_RS08565	0.57	+0.9
1,577,890	+		MMJJ_RS08565	0.61	+0.8
1,577,890	+		MMJJ_RS08565	0.61	+0.2
1,577,891	-		MMJJ_RS08565	0.61	+1.0
1,577,891	-		MMJJ_RS08565	0.61	-2.8
1,577,891	-		MMJJ_RS08565	0.61	+1.7
1,577,892	+		MMJJ_RS08565	0.62	+1.3
1,577,892	+		MMJJ_RS08565	0.62	-0.1
1,577,893	-		MMJJ_RS08565	0.62	+0.5
1,577,893	-		MMJJ_RS08565	0.62	+0.8
1,577,893	-		MMJJ_RS08565	0.62	-0.8
1,577,947	-		MMJJ_RS08565	0.64	-1.5
1,577,948	+		MMJJ_RS08565	0.65	+0.5
1,577,951	-		MMJJ_RS08565	0.65	+0.4
1,577,952	+		MMJJ_RS08565	0.65	+0.3
1,577,957	-		MMJJ_RS08565	0.65	-0.3
1,577,958	+		MMJJ_RS08565	0.65	+0.3
1,577,966	-		MMJJ_RS08565	0.66	+0.5
1,577,966	-		MMJJ_RS08565	0.66	+0.7
1,577,971	+		MMJJ_RS08565	0.66	-2.4
1,577,971	+		MMJJ_RS08565	0.66	+0.0
1,577,971	+		MMJJ_RS08565	0.66	+1.2
1,577,972	-		MMJJ_RS08565	0.66	+0.4
1,578,002	+		MMJJ_RS08565	0.67	-0.2
1,578,028	-		MMJJ_RS08565	0.69	+0.3
1,578,028	-		MMJJ_RS08565	0.69	+0.1
1,578,036	+		MMJJ_RS08565	0.69	+0.4
1,578,036	+		MMJJ_RS08565	0.69	+0.0
1,578,037	-		MMJJ_RS08565	0.69	+1.2
1,578,041	-		MMJJ_RS08565	0.70	-0.6
1,578,041	-		MMJJ_RS08565	0.70	-0.4
1,578,041	-		MMJJ_RS08565	0.70	+0.4
1,578,042	+		MMJJ_RS08565	0.70	+0.1
1,578,045	-		MMJJ_RS08565	0.70	+0.3
1,578,046	+		MMJJ_RS08565	0.70	+1.4
1,578,059	-		MMJJ_RS08565	0.71	-1.1
1,578,059	-		MMJJ_RS08565	0.71	-0.6
1,578,061	-		MMJJ_RS08565	0.71	+0.8
1,578,062	+		MMJJ_RS08565	0.71	+0.4
1,578,078	-		MMJJ_RS08565	0.72	-0.8
1,578,078	-		MMJJ_RS08565	0.72	-0.6
1,578,079	+		MMJJ_RS08565	0.72	-2.1
1,578,079	+		MMJJ_RS08565	0.72	+0.6
1,578,081	+		MMJJ_RS08565	0.72	+0.1
1,578,081	+		MMJJ_RS08565	0.72	+0.4
1,578,081	+		MMJJ_RS08565	0.72	+1.1
1,578,136	-		MMJJ_RS08565	0.75	+0.5
1,578,177	-		MMJJ_RS08565	0.77	+0.1
1,578,177	-		MMJJ_RS08565	0.77	+0.9
1,578,177	-		MMJJ_RS08565	0.77	+0.9
1,578,178	+		MMJJ_RS08565	0.77	-0.9
1,578,178	+		MMJJ_RS08565	0.77	+0.5
1,578,178	+		MMJJ_RS08565	0.77	+0.3
1,578,178	+		MMJJ_RS08565	0.77	+0.8
1,578,179	-		MMJJ_RS08565	0.77	+0.3
1,578,179	-		MMJJ_RS08565	0.77	+0.3
1,578,179	-		MMJJ_RS08565	0.77	+0.4
1,578,179	-		MMJJ_RS08565	0.77	+0.0
1,578,179	-		MMJJ_RS08565	0.77	+1.0
1,578,206	+		MMJJ_RS08565	0.79	+0.5
1,578,210	-		MMJJ_RS08565	0.79	+0.5
1,578,211	+		MMJJ_RS08565	0.79	-1.0
1,578,211	+		MMJJ_RS08565	0.79	+0.7
1,578,211	+		MMJJ_RS08565	0.79	+0.6
1,578,211	+		MMJJ_RS08565	0.79	+0.7
1,578,254	-		MMJJ_RS08565	0.81	-0.4
1,578,255	+		MMJJ_RS08565	0.81	+0.6
1,578,341	+		MMJJ_RS08565	0.86	+0.0
1,578,352	-		MMJJ_RS08565	0.86	-0.9
1,578,385	-		MMJJ_RS08565	0.88	-1.8
1,578,387	-		MMJJ_RS08565	0.88	+0.3
1,578,438	+				+0.5
1,578,453	+				+0.0
1,578,455	+				+1.0
1,578,459	+				-0.9
1,578,459	+				+0.7
1,578,497	+				+0.8
1,578,497	+				+0.6
1,578,500	+				-1.6
1,578,510	+				+0.8
1,578,513	-				+0.6
1,578,513	-				+0.4
1,578,514	+				-0.6
1,578,536	-				-0.9
1,578,536	-				+0.1
1,578,545	+				+0.7
1,578,569	+				+0.7
1,578,645	+				-0.8
1,578,654	-				-1.3
1,578,658	-				+0.0
1,578,663	-				+1.1
1,578,668	+				-1.9
1,578,672	+				+0.8
1,578,676	+				-0.0
1,578,688	+				+0.3
1,578,688	+				+0.6
1,578,692	+				+1.0
1,578,737	-				+0.5
1,578,750	-				+0.4
1,578,751	+				+0.1
1,578,764	-				+1.4
1,578,765	+				-1.7
1,578,765	+				-1.6
1,578,777	+				+1.1
1,578,779	-				+0.9
1,578,830	-		MMJJ_RS08570	0.11	+1.4
1,578,831	+		MMJJ_RS08570	0.11	+0.4
1,578,857	-		MMJJ_RS08570	0.14	+0.2
1,578,860	-		MMJJ_RS08570	0.14	+0.8
1,578,861	+		MMJJ_RS08570	0.14	+0.1
1,578,914	-		MMJJ_RS08570	0.20	-1.9
1,578,915	+		MMJJ_RS08570	0.20	-0.5
1,578,976	-		MMJJ_RS08570	0.26	+0.9
1,578,976	-		MMJJ_RS08570	0.26	-0.3
1,579,182	+		MMJJ_RS08570	0.48	-0.4
1,579,310	+		MMJJ_RS08570	0.62	+1.1
1,579,385	+		MMJJ_RS08570	0.70	+0.0
1,579,428	-		MMJJ_RS08570	0.74	+1.2
1,579,429	+		MMJJ_RS08570	0.74	-0.3
1,579,433	-		MMJJ_RS08570	0.75	-0.3
1,579,433	-		MMJJ_RS08570	0.75	-1.7
1,579,450	-		MMJJ_RS08570	0.76	-0.3
1,579,451	+		MMJJ_RS08570	0.77	-0.1
1,579,451	+		MMJJ_RS08570	0.77	-2.4
1,579,451	+		MMJJ_RS08570	0.77	+0.4
1,579,526	-		MMJJ_RS08570	0.84	-0.6
1,579,527	+		MMJJ_RS08570	0.85	+0.1
1,579,527	+		MMJJ_RS08570	0.85	-0.8
1,579,553	-		MMJJ_RS08570	0.87	-0.2
1,579,553	-		MMJJ_RS08570	0.87	+0.3
1,579,553	-		MMJJ_RS08570	0.87	-0.2
1,579,554	+		MMJJ_RS08570	0.87	+0.2
1,579,554	+		MMJJ_RS08570	0.87	+0.7
1,579,557	-		MMJJ_RS08570	0.88	+3.9
1,579,557	-		MMJJ_RS08570	0.88	+0.6
1,579,557	-		MMJJ_RS08570	0.88	-0.6
1,579,557	-		MMJJ_RS08570	0.88	+0.3
1,579,558	+		MMJJ_RS08570	0.88	+1.0
1,579,558	+		MMJJ_RS08570	0.88	-1.4
1,579,558	+		MMJJ_RS08570	0.88	-0.6
1,579,558	+		MMJJ_RS08570	0.88	+0.5
1,579,624	-				-0.5
1,579,624	-				-0.7
1,579,624	-				+0.8
1,579,624	-				+0.7
1,579,625	+				-0.6
1,579,625	+				+0.1
1,579,684	+				+0.8
1,579,685	-				-0.2
1,579,685	-				-1.6
1,579,686	+				+0.8
1,579,686	+				-0.7
1,579,686	+				-0.2
1,579,686	+				+1.5
1,579,686	+				-0.7
1,579,686	+				+0.4
1,579,686	+				-0.0
1,579,689	-				+0.0
1,579,702	+				-1.1
1,579,702	+				-0.4
1,579,732	-				-0.8
1,579,733	+				-1.6
1,579,733	+				+0.0
1,579,738	-				+0.8
1,579,740	-				-0.3
1,579,740	-				+1.2
1,579,741	+				-1.8
1,579,741	+				-2.2
1,579,743	-				-1.3
1,579,743	-				-0.6
1,579,743	-				-4.3
1,579,748	+				-0.6
1,579,748	+				+1.0
1,579,759	+				+0.9
1,579,767	+				-0.0
1,579,767	+				-1.5
1,579,769	-				+0.2
1,579,772	+				+0.6
1,579,826	-				-2.9
1,579,826	-				-1.6
1,579,826	-				-1.8
1,579,826	-				+1.1
1,579,827	+				-2.7
1,579,827	+				-2.4
1,579,909	+		MMJJ_RS08575	0.32	-2.2
1,579,929	-		MMJJ_RS08575	0.39	-0.8
1,579,930	+		MMJJ_RS08575	0.39	-2.8
1,579,977	-		MMJJ_RS08575	0.55	-2.3
1,580,026	-		MMJJ_RS08575	0.72	-1.0
1,580,026	-		MMJJ_RS08575	0.72	-2.9
1,580,065	+		MMJJ_RS08575	0.85	-2.4
1,580,115	-				+0.9
1,580,180	+		MMJJ_RS08580	0.13	-1.4
1,580,224	-		MMJJ_RS08580	0.22	+0.2
1,580,224	-		MMJJ_RS08580	0.22	-1.2
1,580,227	+		MMJJ_RS08580	0.23	+0.9
1,580,230	+		MMJJ_RS08580	0.23	-0.7
1,580,270	+		MMJJ_RS08580	0.31	-1.1
1,580,335	+		MMJJ_RS08580	0.44	-0.3
1,580,354	+		MMJJ_RS08580	0.48	-0.0
1,580,383	-		MMJJ_RS08580	0.54	-0.2
1,580,384	+		MMJJ_RS08580	0.54	-1.2
1,580,507	+		MMJJ_RS08580	0.79	-0.5
1,580,657	+				-0.5
1,580,662	+				+0.4