Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS00235

Experiment: H2 N-free with 2g/L casaminos 10mM Ammonium chloride

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS00230 and MMJJ_RS00235 are separated by 73 nucleotidesMMJJ_RS00235 and MMJJ_RS00240 are separated by 88 nucleotides MMJJ_RS00230: MMJJ_RS00230 - Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB, at 44,099 to 45,508 _RS00230 MMJJ_RS00235: MMJJ_RS00235 - hypothetical protein, at 45,582 to 47,423 _RS00235 MMJJ_RS00240: MMJJ_RS00240 - AI-2E family transporter, at 47,512 to 48,522 _RS00240 Position (kb) 45 46 47 48Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 45.483 kb on - strandat 45.506 kb on - strandat 45.532 kb on + strandat 45.564 kb on + strandat 45.609 kb on - strandat 45.642 kb on - strandat 45.646 kb on - strandat 45.646 kb on - strandat 45.646 kb on - strandat 45.647 kb on + strandat 45.647 kb on + strandat 45.647 kb on + strandat 45.717 kb on - strandat 45.717 kb on - strandat 45.773 kb on + strand, within MMJJ_RS00235at 45.814 kb on + strand, within MMJJ_RS00235at 45.837 kb on - strand, within MMJJ_RS00235at 45.837 kb on - strand, within MMJJ_RS00235at 45.881 kb on - strand, within MMJJ_RS00235at 45.881 kb on - strand, within MMJJ_RS00235at 45.881 kb on - strand, within MMJJ_RS00235at 45.882 kb on + strand, within MMJJ_RS00235at 45.882 kb on + strand, within MMJJ_RS00235at 45.885 kb on - strand, within MMJJ_RS00235at 45.886 kb on + strand, within MMJJ_RS00235at 45.906 kb on + strand, within MMJJ_RS00235at 45.926 kb on - strand, within MMJJ_RS00235at 45.977 kb on + strand, within MMJJ_RS00235at 45.977 kb on + strand, within MMJJ_RS00235at 46.002 kb on - strand, within MMJJ_RS00235at 46.002 kb on - strand, within MMJJ_RS00235at 46.002 kb on - strand, within MMJJ_RS00235at 46.003 kb on + strand, within MMJJ_RS00235at 46.003 kb on + strand, within MMJJ_RS00235at 46.007 kb on + strand, within MMJJ_RS00235at 46.007 kb on + strand, within MMJJ_RS00235at 46.007 kb on + strand, within MMJJ_RS00235at 46.033 kb on - strand, within MMJJ_RS00235at 46.034 kb on + strand, within MMJJ_RS00235at 46.075 kb on - strand, within MMJJ_RS00235at 46.076 kb on + strand, within MMJJ_RS00235at 46.106 kb on - strand, within MMJJ_RS00235at 46.107 kb on + strand, within MMJJ_RS00235at 46.120 kb on - strand, within MMJJ_RS00235at 46.135 kb on + strand, within MMJJ_RS00235at 46.152 kb on + strand, within MMJJ_RS00235at 46.252 kb on + strand, within MMJJ_RS00235at 46.336 kb on + strand, within MMJJ_RS00235at 46.338 kb on - strand, within MMJJ_RS00235at 46.339 kb on + strand, within MMJJ_RS00235at 46.339 kb on + strand, within MMJJ_RS00235at 46.394 kb on - strand, within MMJJ_RS00235at 46.426 kb on - strand, within MMJJ_RS00235at 46.430 kb on - strand, within MMJJ_RS00235at 46.445 kb on - strand, within MMJJ_RS00235at 46.480 kb on + strand, within MMJJ_RS00235at 46.480 kb on + strand, within MMJJ_RS00235at 46.586 kb on + strand, within MMJJ_RS00235at 46.586 kb on + strand, within MMJJ_RS00235at 46.594 kb on + strand, within MMJJ_RS00235at 46.673 kb on - strand, within MMJJ_RS00235at 46.674 kb on + strand, within MMJJ_RS00235at 46.681 kb on - strand, within MMJJ_RS00235at 46.682 kb on + strand, within MMJJ_RS00235at 46.686 kb on + strand, within MMJJ_RS00235at 46.686 kb on + strand, within MMJJ_RS00235at 46.723 kb on - strand, within MMJJ_RS00235at 46.724 kb on + strand, within MMJJ_RS00235at 46.730 kb on + strand, within MMJJ_RS00235at 46.747 kb on + strand, within MMJJ_RS00235at 46.747 kb on + strand, within MMJJ_RS00235at 46.760 kb on - strand, within MMJJ_RS00235at 46.760 kb on - strand, within MMJJ_RS00235at 46.760 kb on - strand, within MMJJ_RS00235at 46.761 kb on + strand, within MMJJ_RS00235at 46.762 kb on - strand, within MMJJ_RS00235at 46.763 kb on + strand, within MMJJ_RS00235at 46.763 kb on + strand, within MMJJ_RS00235at 46.769 kb on - strand, within MMJJ_RS00235at 46.769 kb on - strand, within MMJJ_RS00235at 46.774 kb on - strand, within MMJJ_RS00235at 46.774 kb on - strand, within MMJJ_RS00235at 46.775 kb on + strand, within MMJJ_RS00235at 46.847 kb on - strand, within MMJJ_RS00235at 46.860 kb on - strand, within MMJJ_RS00235at 47.043 kb on + strand, within MMJJ_RS00235at 47.060 kb on - strand, within MMJJ_RS00235at 47.174 kb on - strand, within MMJJ_RS00235at 47.174 kb on - strand, within MMJJ_RS00235at 47.174 kb on - strand, within MMJJ_RS00235at 47.174 kb on - strand, within MMJJ_RS00235at 47.174 kb on - strand, within MMJJ_RS00235at 47.174 kb on - strand, within MMJJ_RS00235at 47.174 kb on - strand, within MMJJ_RS00235at 47.175 kb on + strand, within MMJJ_RS00235at 47.175 kb on + strand, within MMJJ_RS00235at 47.175 kb on + strand, within MMJJ_RS00235at 47.346 kb on + strandat 47.389 kb on - strandat 47.423 kb on - strandat 47.423 kb on - strandat 47.423 kb on - strandat 47.423 kb on - strandat 47.423 kb on - strandat 47.423 kb on - strandat 47.423 kb on - strandat 47.423 kb on - strandat 47.423 kb on - strandat 47.424 kb on + strandat 47.424 kb on + strandat 47.424 kb on + strandat 47.424 kb on + strandat 47.424 kb on + strandat 47.424 kb on + strandat 47.425 kb on - strandat 47.425 kb on - strandat 47.425 kb on - strandat 47.425 kb on - strandat 47.425 kb on - strandat 47.425 kb on - strandat 47.425 kb on - strandat 47.425 kb on - strandat 47.425 kb on - strandat 47.426 kb on + strandat 47.426 kb on + strandat 47.426 kb on + strandat 47.426 kb on + strandat 47.426 kb on + strandat 47.426 kb on + strandat 47.426 kb on + strandat 47.426 kb on + strandat 47.427 kb on - strandat 47.427 kb on - strandat 47.427 kb on - strandat 47.427 kb on - strandat 47.427 kb on - strandat 47.427 kb on - strandat 47.428 kb on + strandat 47.428 kb on + strandat 47.428 kb on + strandat 47.450 kb on - strandat 47.451 kb on + strandat 47.451 kb on + strandat 47.454 kb on - strandat 47.460 kb on - strandat 47.471 kb on - strandat 47.472 kb on + strandat 47.472 kb on + strandat 47.477 kb on - strandat 47.478 kb on + strandat 47.478 kb on + strandat 47.479 kb on - strandat 47.479 kb on - strandat 47.494 kb on + strandat 47.494 kb on + strandat 47.529 kb on - strandat 47.530 kb on + strandat 47.553 kb on + strandat 47.555 kb on - strandat 47.555 kb on - strandat 47.568 kb on + strandat 47.576 kb on - strandat 47.576 kb on - strandat 47.577 kb on + strandat 47.577 kb on + strandat 47.577 kb on + strandat 47.597 kb on - strandat 47.598 kb on + strandat 47.598 kb on + strandat 47.598 kb on + strandat 47.602 kb on + strandat 47.629 kb on - strand, within MMJJ_RS00240at 47.665 kb on - strand, within MMJJ_RS00240at 47.668 kb on + strand, within MMJJ_RS00240at 47.690 kb on - strand, within MMJJ_RS00240at 47.697 kb on - strand, within MMJJ_RS00240at 47.698 kb on + strand, within MMJJ_RS00240at 47.709 kb on + strand, within MMJJ_RS00240at 47.724 kb on + strand, within MMJJ_RS00240at 47.741 kb on - strand, within MMJJ_RS00240at 47.779 kb on - strand, within MMJJ_RS00240at 47.779 kb on - strand, within MMJJ_RS00240at 47.797 kb on - strand, within MMJJ_RS00240at 47.798 kb on + strand, within MMJJ_RS00240at 47.799 kb on - strand, within MMJJ_RS00240at 47.799 kb on - strand, within MMJJ_RS00240at 47.799 kb on - strand, within MMJJ_RS00240at 47.799 kb on - strand, within MMJJ_RS00240at 47.799 kb on - strand, within MMJJ_RS00240at 47.799 kb on - strand, within MMJJ_RS00240at 47.800 kb on + strand, within MMJJ_RS00240at 47.800 kb on + strand, within MMJJ_RS00240at 47.800 kb on + strand, within MMJJ_RS00240at 47.804 kb on - strand, within MMJJ_RS00240at 47.811 kb on - strand, within MMJJ_RS00240at 47.814 kb on + strand, within MMJJ_RS00240at 47.818 kb on - strand, within MMJJ_RS00240at 47.819 kb on + strand, within MMJJ_RS00240at 47.819 kb on + strand, within MMJJ_RS00240at 47.819 kb on + strand, within MMJJ_RS00240at 47.820 kb on - strand, within MMJJ_RS00240at 47.822 kb on - strand, within MMJJ_RS00240at 47.822 kb on - strand, within MMJJ_RS00240at 47.823 kb on + strand, within MMJJ_RS00240at 47.828 kb on - strand, within MMJJ_RS00240at 47.828 kb on - strand, within MMJJ_RS00240at 47.829 kb on + strand, within MMJJ_RS00240at 47.853 kb on + strand, within MMJJ_RS00240at 47.921 kb on + strand, within MMJJ_RS00240at 47.934 kb on + strand, within MMJJ_RS00240at 47.956 kb on + strand, within MMJJ_RS00240at 47.971 kb on - strand, within MMJJ_RS00240at 47.971 kb on - strand, within MMJJ_RS00240at 47.974 kb on - strand, within MMJJ_RS00240at 47.994 kb on - strand, within MMJJ_RS00240at 47.995 kb on + strand, within MMJJ_RS00240at 47.995 kb on + strand, within MMJJ_RS00240at 47.995 kb on + strand, within MMJJ_RS00240at 47.995 kb on + strand, within MMJJ_RS00240at 48.080 kb on + strand, within MMJJ_RS00240at 48.080 kb on + strand, within MMJJ_RS00240at 48.118 kb on + strand, within MMJJ_RS00240at 48.233 kb on - strand, within MMJJ_RS00240at 48.235 kb on - strand, within MMJJ_RS00240at 48.235 kb on - strand, within MMJJ_RS00240at 48.235 kb on - strand, within MMJJ_RS00240at 48.235 kb on - strand, within MMJJ_RS00240at 48.235 kb on - strand, within MMJJ_RS00240at 48.235 kb on - strand, within MMJJ_RS00240at 48.235 kb on - strand, within MMJJ_RS00240at 48.235 kb on - strand, within MMJJ_RS00240at 48.236 kb on + strand, within MMJJ_RS00240at 48.236 kb on + strand, within MMJJ_RS00240at 48.236 kb on + strand, within MMJJ_RS00240at 48.236 kb on + strand, within MMJJ_RS00240at 48.236 kb on + strand, within MMJJ_RS00240at 48.257 kb on + strand, within MMJJ_RS00240at 48.290 kb on - strand, within MMJJ_RS00240at 48.338 kb on - strand, within MMJJ_RS00240at 48.338 kb on - strand, within MMJJ_RS00240at 48.356 kb on - strand, within MMJJ_RS00240at 48.357 kb on + strand, within MMJJ_RS00240at 48.372 kb on - strand, within MMJJ_RS00240

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 2g/L casaminos 10mM Ammonium chloride
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45,483 - -3.2
45,506 - +1.6
45,532 + +0.2
45,564 + +0.0
45,609 - -2.3
45,642 - -3.8
45,646 - -3.3
45,646 - -4.8
45,646 - -2.3
45,647 + -1.7
45,647 + -4.4
45,647 + -2.9
45,717 - -3.4
45,717 - -1.6
45,773 + MMJJ_RS00235 0.10 -3.3
45,814 + MMJJ_RS00235 0.13 -3.9
45,837 - MMJJ_RS00235 0.14 -2.6
45,837 - MMJJ_RS00235 0.14 -3.2
45,881 - MMJJ_RS00235 0.16 -3.8
45,881 - MMJJ_RS00235 0.16 -4.5
45,881 - MMJJ_RS00235 0.16 -2.1
45,882 + MMJJ_RS00235 0.16 -1.9
45,882 + MMJJ_RS00235 0.16 -4.8
45,885 - MMJJ_RS00235 0.16 -4.7
45,886 + MMJJ_RS00235 0.17 -4.5
45,906 + MMJJ_RS00235 0.18 -3.6
45,926 - MMJJ_RS00235 0.19 -4.0
45,977 + MMJJ_RS00235 0.21 -2.7
45,977 + MMJJ_RS00235 0.21 -4.1
46,002 - MMJJ_RS00235 0.23 -4.8
46,002 - MMJJ_RS00235 0.23 -2.6
46,002 - MMJJ_RS00235 0.23 -1.2
46,003 + MMJJ_RS00235 0.23 -4.5
46,003 + MMJJ_RS00235 0.23 -3.9
46,007 + MMJJ_RS00235 0.23 -3.5
46,007 + MMJJ_RS00235 0.23 -3.8
46,007 + MMJJ_RS00235 0.23 -4.6
46,033 - MMJJ_RS00235 0.24 -3.0
46,034 + MMJJ_RS00235 0.25 -4.9
46,075 - MMJJ_RS00235 0.27 -2.9
46,076 + MMJJ_RS00235 0.27 -4.6
46,106 - MMJJ_RS00235 0.28 -3.1
46,107 + MMJJ_RS00235 0.29 -2.6
46,120 - MMJJ_RS00235 0.29 -2.2
46,135 + MMJJ_RS00235 0.30 -0.4
46,152 + MMJJ_RS00235 0.31 -3.7
46,252 + MMJJ_RS00235 0.36 -3.6
46,336 + MMJJ_RS00235 0.41 -2.0
46,338 - MMJJ_RS00235 0.41 -4.2
46,339 + MMJJ_RS00235 0.41 -3.9
46,339 + MMJJ_RS00235 0.41 -3.2
46,394 - MMJJ_RS00235 0.44 -2.2
46,426 - MMJJ_RS00235 0.46 -0.3
46,430 - MMJJ_RS00235 0.46 -4.0
46,445 - MMJJ_RS00235 0.47 -1.7
46,480 + MMJJ_RS00235 0.49 -4.4
46,480 + MMJJ_RS00235 0.49 -2.1
46,586 + MMJJ_RS00235 0.55 -3.8
46,586 + MMJJ_RS00235 0.55 -4.0
46,594 + MMJJ_RS00235 0.55 -2.9
46,673 - MMJJ_RS00235 0.59 -3.1
46,674 + MMJJ_RS00235 0.59 -0.4
46,681 - MMJJ_RS00235 0.60 -5.1
46,682 + MMJJ_RS00235 0.60 -4.2
46,686 + MMJJ_RS00235 0.60 -4.4
46,686 + MMJJ_RS00235 0.60 -2.5
46,723 - MMJJ_RS00235 0.62 -4.6
46,724 + MMJJ_RS00235 0.62 -4.3
46,730 + MMJJ_RS00235 0.62 -3.5
46,747 + MMJJ_RS00235 0.63 -2.0
46,747 + MMJJ_RS00235 0.63 -3.0
46,760 - MMJJ_RS00235 0.64 -3.0
46,760 - MMJJ_RS00235 0.64 -4.9
46,760 - MMJJ_RS00235 0.64 -4.0
46,761 + MMJJ_RS00235 0.64 -3.3
46,762 - MMJJ_RS00235 0.64 -2.8
46,763 + MMJJ_RS00235 0.64 -4.5
46,763 + MMJJ_RS00235 0.64 -4.0
46,769 - MMJJ_RS00235 0.64 -3.3
46,769 - MMJJ_RS00235 0.64 -5.6
46,774 - MMJJ_RS00235 0.65 -4.8
46,774 - MMJJ_RS00235 0.65 -4.9
46,775 + MMJJ_RS00235 0.65 -3.3
46,847 - MMJJ_RS00235 0.69 -3.6
46,860 - MMJJ_RS00235 0.69 -1.7
47,043 + MMJJ_RS00235 0.79 -4.0
47,060 - MMJJ_RS00235 0.80 -1.5
47,174 - MMJJ_RS00235 0.86 -2.9
47,174 - MMJJ_RS00235 0.86 -2.7
47,174 - MMJJ_RS00235 0.86 -3.9
47,174 - MMJJ_RS00235 0.86 -2.0
47,174 - MMJJ_RS00235 0.86 -3.0
47,174 - MMJJ_RS00235 0.86 -3.7
47,174 - MMJJ_RS00235 0.86 -5.7
47,175 + MMJJ_RS00235 0.86 -2.9
47,175 + MMJJ_RS00235 0.86 -1.5
47,175 + MMJJ_RS00235 0.86 -4.6
47,346 + -2.7
47,389 - -2.9
47,423 - -4.8
47,423 - -4.5
47,423 - -3.0
47,423 - -1.9
47,423 - -4.2
47,423 - -2.9
47,423 - -2.5
47,423 - -2.6
47,423 - -4.1
47,424 + -1.5
47,424 + -3.8
47,424 + -2.8
47,424 + -2.6
47,424 + -3.5
47,424 + -1.7
47,425 - -3.6
47,425 - -3.7
47,425 - -3.7
47,425 - -4.6
47,425 - -1.1
47,425 - -3.3
47,425 - -4.7
47,425 - -3.9
47,425 - -2.5
47,426 + -4.6
47,426 + -2.5
47,426 + -3.0
47,426 + -5.4
47,426 + -1.6
47,426 + -5.2
47,426 + -4.2
47,426 + -3.3
47,427 - -3.2
47,427 - -2.9
47,427 - -3.7
47,427 - -3.7
47,427 - -4.0
47,427 - -3.3
47,428 + -4.0
47,428 + -5.1
47,428 + -3.4
47,450 - +0.3
47,451 + +0.4
47,451 + -1.3
47,454 - +0.1
47,460 - -1.4
47,471 - -0.8
47,472 + -0.5
47,472 + +0.0
47,477 - -0.7
47,478 + -0.4
47,478 + -0.4
47,479 - +0.2
47,479 - -1.4
47,494 + -0.6
47,494 + +1.2
47,529 - +0.1
47,530 + -1.2
47,553 + +1.1
47,555 - -0.1
47,555 - -0.5
47,568 + +0.5
47,576 - -0.4
47,576 - +0.1
47,577 + +0.8
47,577 + +0.6
47,577 + -0.2
47,597 - +0.4
47,598 + -1.0
47,598 + +1.4
47,598 + +0.6
47,602 + +0.1
47,629 - MMJJ_RS00240 0.12 -0.4
47,665 - MMJJ_RS00240 0.15 +0.1
47,668 + MMJJ_RS00240 0.15 +0.8
47,690 - MMJJ_RS00240 0.18 +0.1
47,697 - MMJJ_RS00240 0.18 -0.9
47,698 + MMJJ_RS00240 0.18 +0.3
47,709 + MMJJ_RS00240 0.19 +0.8
47,724 + MMJJ_RS00240 0.21 +0.2
47,741 - MMJJ_RS00240 0.23 +1.4
47,779 - MMJJ_RS00240 0.26 +0.1
47,779 - MMJJ_RS00240 0.26 +0.0
47,797 - MMJJ_RS00240 0.28 -0.1
47,798 + MMJJ_RS00240 0.28 -0.6
47,799 - MMJJ_RS00240 0.28 +0.1
47,799 - MMJJ_RS00240 0.28 -0.1
47,799 - MMJJ_RS00240 0.28 +0.5
47,799 - MMJJ_RS00240 0.28 +0.7
47,799 - MMJJ_RS00240 0.28 +0.2
47,799 - MMJJ_RS00240 0.28 +0.4
47,800 + MMJJ_RS00240 0.28 -0.9
47,800 + MMJJ_RS00240 0.28 +0.7
47,800 + MMJJ_RS00240 0.28 +0.6
47,804 - MMJJ_RS00240 0.29 +0.7
47,811 - MMJJ_RS00240 0.30 -0.6
47,814 + MMJJ_RS00240 0.30 -0.8
47,818 - MMJJ_RS00240 0.30 -0.0
47,819 + MMJJ_RS00240 0.30 +0.9
47,819 + MMJJ_RS00240 0.30 +0.8
47,819 + MMJJ_RS00240 0.30 -3.4
47,820 - MMJJ_RS00240 0.30 -0.6
47,822 - MMJJ_RS00240 0.31 -0.1
47,822 - MMJJ_RS00240 0.31 +0.3
47,823 + MMJJ_RS00240 0.31 -0.9
47,828 - MMJJ_RS00240 0.31 -2.9
47,828 - MMJJ_RS00240 0.31 -0.3
47,829 + MMJJ_RS00240 0.31 +1.0
47,853 + MMJJ_RS00240 0.34 -0.6
47,921 + MMJJ_RS00240 0.40 +0.7
47,934 + MMJJ_RS00240 0.42 +0.5
47,956 + MMJJ_RS00240 0.44 +0.0
47,971 - MMJJ_RS00240 0.45 +0.7
47,971 - MMJJ_RS00240 0.45 +0.6
47,974 - MMJJ_RS00240 0.46 +0.5
47,994 - MMJJ_RS00240 0.48 -1.2
47,995 + MMJJ_RS00240 0.48 -0.0
47,995 + MMJJ_RS00240 0.48 +3.4
47,995 + MMJJ_RS00240 0.48 -0.7
47,995 + MMJJ_RS00240 0.48 +0.4
48,080 + MMJJ_RS00240 0.56 -0.5
48,080 + MMJJ_RS00240 0.56 -1.4
48,118 + MMJJ_RS00240 0.60 -0.9
48,233 - MMJJ_RS00240 0.71 +0.2
48,235 - MMJJ_RS00240 0.72 +1.0
48,235 - MMJJ_RS00240 0.72 +0.0
48,235 - MMJJ_RS00240 0.72 -0.6
48,235 - MMJJ_RS00240 0.72 +0.7
48,235 - MMJJ_RS00240 0.72 -0.5
48,235 - MMJJ_RS00240 0.72 +1.0
48,235 - MMJJ_RS00240 0.72 -0.5
48,235 - MMJJ_RS00240 0.72 +0.5
48,236 + MMJJ_RS00240 0.72 +0.9
48,236 + MMJJ_RS00240 0.72 -0.3
48,236 + MMJJ_RS00240 0.72 -0.3
48,236 + MMJJ_RS00240 0.72 -0.3
48,236 + MMJJ_RS00240 0.72 +0.1
48,257 + MMJJ_RS00240 0.74 -0.5
48,290 - MMJJ_RS00240 0.77 -1.0
48,338 - MMJJ_RS00240 0.82 +0.5
48,338 - MMJJ_RS00240 0.82 +0.3
48,356 - MMJJ_RS00240 0.83 +1.0
48,357 + MMJJ_RS00240 0.84 -2.3
48,372 - MMJJ_RS00240 0.85 +0.7

Or see this region's nucleotide sequence